CLIP1-AS1

Summary

CLIP1-AS1 (CLIP1 antisense RNA 1, HGNC:48586) is a long non-coding RNA gene on chromosome 12q24.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48586
Approved symbol	CLIP1-AS1
Name	CLIP1 antisense RNA 1
Location	12q24.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257097
Ensembl biotype	lncRNA
Entrez	100507066
RNAcentral	URS000075B10A — lncRNA, 903 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000535976, ENST00000539034

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000535976 — 3 exons

Exon	Start	End
ENSE00002258566	122395606	122395665
ENSE00002291126	122399296	122400857
ENSE00002303587	122396583	122396705

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 73.14.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0174 / max 14.4347, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
128516	0.0174	4

Top tissues by expression

218 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
kidney epithelium	UBERON:0004819	73.14	gold quality
bone marrow cell	CL:0002092	72.16	gold quality
epithelial cell of pancreas	CL:0000083	72.02	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	72.00	gold quality
colonic epithelium	UBERON:0000397	69.95	gold quality
sperm	CL:0000019	69.59	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	69.13	gold quality
left ventricle myocardium	UBERON:0006566	69.08	gold quality
cardiac muscle of right atrium	UBERON:0003379	69.05	gold quality
tendon of biceps brachii	UBERON:0008188	68.72	gold quality
buccal mucosa cell	CL:0002336	67.85	gold quality
sural nerve	UBERON:0015488	66.95	silver quality
right testis	UBERON:0004534	65.09	gold quality
vastus lateralis	UBERON:0001379	64.73	gold quality
quadriceps femoris	UBERON:0001377	64.35	gold quality
left testis	UBERON:0004533	64.11	gold quality
skeletal muscle tissue	UBERON:0001134	63.67	gold quality
nasal cavity epithelium	UBERON:0005384	63.36	gold quality
biceps brachii	UBERON:0001507	63.27	gold quality
testis	UBERON:0000473	62.61	gold quality
pancreatic ductal cell	CL:0002079	61.23	silver quality
hindlimb stylopod muscle	UBERON:0004252	60.83	gold quality
tonsil	UBERON:0002372	59.97	silver quality
tendon	UBERON:0000043	59.89	silver quality
cortical plate	UBERON:0005343	58.58	silver quality
tibialis anterior	UBERON:0001385	58.49	silver quality
deltoid	UBERON:0001476	58.16	gold quality
myocardium	UBERON:0002349	58.10	gold quality
ventricular zone	UBERON:0003053	57.96	silver quality
parotid gland	UBERON:0001831	57.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.51

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.