CLK3-AS1

Summary

CLK3-AS1 (CLK3 antisense RNA 1, HGNC:58198) is a long non-coding RNA gene on chromosome 15q24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58198
Approved symbol	CLK3-AS1
Name	CLK3 antisense RNA 1
Location	15q24.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000275527
Ensembl biotype	lncRNA
Entrez	102723750
RNAcentral	URS0002A1A66D — lncRNA, 2529 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000617850, ENST00000772850

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000617850 — 1 exons

Exon	Start	End
ENSE00003728924	74598919	74599397

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 90.55.

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.55	gold quality
bone marrow	UBERON:0002371	86.69	gold quality
blood	UBERON:0000178	82.99	gold quality
bone marrow cell	CL:0002092	81.95	gold quality
hindlimb stylopod muscle	UBERON:0004252	70.79	gold quality
colonic epithelium	UBERON:0000397	69.56	gold quality
leukocyte	CL:0000738	68.86	gold quality
monocyte	CL:0000576	68.74	gold quality
ventricular zone	UBERON:0003053	67.64	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	66.65	gold quality
muscle tissue	UBERON:0002385	66.08	gold quality
smooth muscle tissue	UBERON:0001135	66.02	gold quality
islet of Langerhans	UBERON:0000006	65.57	gold quality
skeletal muscle tissue	UBERON:0001134	64.90	gold quality
ganglionic eminence	UBERON:0004023	64.80	gold quality
cortical plate	UBERON:0005343	64.66	gold quality
tonsil	UBERON:0002372	64.65	gold quality
urinary bladder	UBERON:0001255	63.83	gold quality
right lobe of liver	UBERON:0001114	62.62	gold quality
liver	UBERON:0002107	62.08	gold quality
quadriceps femoris	UBERON:0001377	61.63	gold quality
gall bladder	UBERON:0002110	61.23	gold quality
prefrontal cortex	UBERON:0000451	60.81	gold quality
lymph node	UBERON:0000029	60.50	gold quality
fallopian tube	UBERON:0003889	60.09	gold quality
kidney	UBERON:0002113	59.78	gold quality
right adrenal gland	UBERON:0001233	59.03	gold quality
right testis	UBERON:0004534	58.95	gold quality
duodenum	UBERON:0002114	58.74	gold quality
spleen	UBERON:0002106	58.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.