CNIH3-AS1

Summary

CNIH3-AS1 (CNIH3 antisense RNA 1, HGNC:41163) is a long non-coding RNA gene on chromosome 1q42.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41163
Approved symbol	CNIH3-AS1
Name	CNIH3 antisense RNA 1
Location	1q42.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229400
Ensembl biotype	lncRNA
Entrez	105373106
RNAcentral	URS00026A2389 — lncRNA, 1092 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000431691

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000431691 — 3 exons

Exon	Start	End
ENSE00001646855	224717504	224717810
ENSE00001725047	224718944	224719108
ENSE00001789229	224730298	224730662

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 66.62.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0802 / max 10.3282, expressed in 41 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
17687	0.0802	41

Top tissues by expression

85 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
stromal cell of endometrium	CL:0002255	66.62	gold quality
myometrium	UBERON:0001296	59.90	gold quality
liver	UBERON:0002107	58.95	gold quality
calcaneal tendon	UBERON:0003701	57.71	gold quality
right lobe of liver	UBERON:0001114	56.23	gold quality
thoracic mammary gland	UBERON:0005200	55.71	gold quality
blood	UBERON:0000178	55.29	gold quality
sural nerve	UBERON:0015488	53.75	silver quality
monocyte	CL:0000576	53.49	gold quality
tibial artery	UBERON:0007610	50.81	gold quality
popliteal artery	UBERON:0002250	50.76	gold quality
skin of leg	UBERON:0001511	50.70	gold quality
cerebellar cortex	UBERON:0002129	50.64	silver quality
islet of Langerhans	UBERON:0000006	50.51	gold quality
primary visual cortex	UBERON:0002436	50.50	gold quality
zone of skin	UBERON:0000014	50.14	gold quality
muscle of leg	UBERON:0001383	49.83	gold quality
prefrontal cortex	UBERON:0000451	49.49	gold quality
skin of abdomen	UBERON:0001416	49.18	gold quality
pancreas	UBERON:0001264	48.98	gold quality
kidney	UBERON:0002113	48.24	silver quality
adrenal gland	UBERON:0002369	47.91	silver quality
body of pancreas	UBERON:0001150	47.85	gold quality
adenohypophysis	UBERON:0002196	47.74	gold quality
endocervix	UBERON:0000458	47.40	gold quality
lymph node	UBERON:0000029	47.23	silver quality
subcutaneous adipose tissue	UBERON:0002190	46.84	gold quality
gastrocnemius	UBERON:0001388	46.15	gold quality
superior frontal gyrus	UBERON:0002661	45.84	silver quality
gall bladder	UBERON:0002110	44.48	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.