CNIH3-AS2

Summary

CNIH3-AS2 (CNIH3 antisense RNA 2, HGNC:41162) is a long non-coding RNA gene on chromosome 1q42.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41162
Approved symbol	CNIH3-AS2
Name	CNIH3 antisense RNA 2
Location	1q42.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233384
Ensembl biotype	lncRNA
Entrez	102723817
RNAcentral	URS00026A24C4 — lncRNA, 3840 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000437416, ENST00000657834, ENST00000663810, ENST00000784741, ENST00000784742, ENST00000784743, ENST00000784744, ENST00000784745, ENST00000784746, ENST00000784747, ENST00000784748, ENST00000784749, ENST00000784750, ENST00000784751

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000437416 — 4 exons

Exon	Start	End
ENSE00001757250	224616075	224616220
ENSE00001760681	224615204	224615427
ENSE00001804729	224615612	224615736
ENSE00003857831	224608130	224611592

Expression profiles

Bgee: expression breadth ubiquitous, 123 present calls, max score 76.72.

Top tissues by expression

123 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.72	gold quality
stromal cell of endometrium	CL:0002255	72.46	gold quality
cortical plate	UBERON:0005343	70.77	gold quality
prefrontal cortex	UBERON:0000451	68.14	gold quality
primary visual cortex	UBERON:0002436	68.06	gold quality
superior frontal gyrus	UBERON:0002661	67.47	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	67.03	gold quality
frontal cortex	UBERON:0001870	66.87	gold quality
Brodmann (1909) area 9	UBERON:0013540	66.38	gold quality
cerebral cortex	UBERON:0000956	66.30	gold quality
anterior cingulate cortex	UBERON:0009835	65.71	gold quality
right frontal lobe	UBERON:0002810	64.90	gold quality
Ammon’s horn	UBERON:0001954	63.58	gold quality
ventricular zone	UBERON:0003053	62.63	gold quality
amygdala	UBERON:0001876	62.26	gold quality
temporal lobe	UBERON:0001871	62.15	gold quality
pituitary gland	UBERON:0000007	61.88	gold quality
adenohypophysis	UBERON:0002196	61.64	gold quality
brain	UBERON:0000955	58.43	gold quality
endometrium	UBERON:0001295	56.76	gold quality
calcaneal tendon	UBERON:0003701	56.64	gold quality
ganglionic eminence	UBERON:0004023	56.54	silver quality
substantia nigra	UBERON:0002038	56.28	gold quality
skeletal muscle tissue	UBERON:0001134	55.74	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	55.19	gold quality
blood	UBERON:0000178	55.15	gold quality
body of pancreas	UBERON:0001150	54.81	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.62	gold quality
pancreas	UBERON:0001264	54.07	gold quality
nucleus accumbens	UBERON:0001882	53.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.70

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.