CNNM3-DT

Summary

CNNM3-DT (CNNM3 divergent transcript, HGNC:53592) is a long non-coding RNA gene on chromosome 2q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53592
Approved symbol	CNNM3-DT
Name	CNNM3 divergent transcript
Location	2q11.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	LOC100506036
Ensembl gene	ENSG00000273265
Ensembl biotype	lncRNA
Entrez	100506036
RNAcentral	URS0000BC4620 — lncRNA, 439 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000608609, ENST00000690930, ENST00000716088, ENST00000824521, ENST00000824522

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000608609 — 2 exons

Exon	Start	End
ENSE00003704141	96811822	96812489
ENSE00004233821	96813494	96814321

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 91.22.

Top tissues by expression

131 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.22	gold quality
right testis	UBERON:0004534	78.60	gold quality
left testis	UBERON:0004533	78.45	gold quality
right uterine tube	UBERON:0001302	78.44	gold quality
testis	UBERON:0000473	78.17	gold quality
gastrocnemius	UBERON:0001388	78.09	gold quality
muscle of leg	UBERON:0001383	77.79	gold quality
gall bladder	UBERON:0002110	74.60	gold quality
colonic epithelium	UBERON:0000397	74.56	gold quality
skeletal muscle tissue	UBERON:0001134	74.53	gold quality
mucosa of stomach	UBERON:0001199	73.96	gold quality
tibial nerve	UBERON:0001323	73.76	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	73.15	gold quality
fallopian tube	UBERON:0003889	72.54	gold quality
muscle tissue	UBERON:0002385	72.45	gold quality
lymph node	UBERON:0000029	72.41	gold quality
right hemisphere of cerebellum	UBERON:0014890	72.07	gold quality
cerebellar hemisphere	UBERON:0002245	72.00	gold quality
cerebellar cortex	UBERON:0002129	71.80	gold quality
granulocyte	CL:0000094	71.75	gold quality
body of pancreas	UBERON:0001150	71.73	gold quality
calcaneal tendon	UBERON:0003701	71.71	gold quality
cerebellum	UBERON:0002037	71.62	gold quality
pancreas	UBERON:0001264	71.54	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	71.52	gold quality
right coronary artery	UBERON:0001625	71.51	gold quality
popliteal artery	UBERON:0002250	71.48	gold quality
tibial artery	UBERON:0007610	71.47	gold quality
body of uterus	UBERON:0009853	71.19	gold quality
islet of Langerhans	UBERON:0000006	71.14	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.99

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.