CNPY2-AS1

Summary

CNPY2-AS1 (CNPY2 antisense RNA 1, HGNC:55480) is a long non-coding RNA gene on chromosome 12q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55480
Approved symbol	CNPY2-AS1
Name	CNPY2 antisense RNA 1
Location	12q13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257303
Ensembl biotype	lncRNA
Entrez	112268098
RNAcentral	URS0002A44887 — lncRNA, 3577 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000549565, ENST00000549860, ENST00000660360, ENST00000824822, ENST00000824823, ENST00000824824

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000549565 — 3 exons

Exon	Start	End
ENSE00002333864	56312407	56312499
ENSE00004234461	56300039	56300187
ENSE00004234467	56314529	56315278

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 89.52.

Top tissues by expression

134 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
hindlimb stylopod muscle	UBERON:0004252	89.52	gold quality
gastrocnemius	UBERON:0001388	88.67	gold quality
muscle of leg	UBERON:0001383	88.33	gold quality
skeletal muscle tissue	UBERON:0001134	86.53	gold quality
apex of heart	UBERON:0002098	85.05	gold quality
heart left ventricle	UBERON:0002084	84.60	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.77	gold quality
muscle tissue	UBERON:0002385	83.77	gold quality
heart	UBERON:0000948	82.02	gold quality
right atrium auricular region	UBERON:0006631	81.36	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.18	gold quality
adult mammalian kidney	UBERON:0000082	79.04	gold quality
left lobe of thyroid gland	UBERON:0001120	78.90	gold quality
right lobe of thyroid gland	UBERON:0001119	78.67	gold quality
thyroid gland	UBERON:0002046	78.61	gold quality
lower esophagus muscularis layer	UBERON:0035833	78.54	gold quality
right lobe of liver	UBERON:0001114	78.48	gold quality
lower esophagus	UBERON:0013473	78.48	gold quality
fundus of stomach	UBERON:0001160	78.44	gold quality
cortex of kidney	UBERON:0001225	78.23	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	78.06	gold quality
kidney	UBERON:0002113	77.92	gold quality
body of pancreas	UBERON:0001150	77.87	gold quality
substantia nigra	UBERON:0002038	77.72	gold quality
left adrenal gland cortex	UBERON:0035825	77.66	gold quality
right adrenal gland	UBERON:0001233	77.51	gold quality
mucosa of transverse colon	UBERON:0004991	77.51	gold quality
body of stomach	UBERON:0001161	77.50	gold quality
muscle layer of sigmoid colon	UBERON:0035805	77.44	gold quality
descending thoracic aorta	UBERON:0002345	77.28	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-MTAB-9543	yes	18.72
E-ANND-3	yes	3.37

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.