CNTNAP1-AS1

Summary

CNTNAP1-AS1 (CNTNAP1 antisense RNA 1, HGNC:58591) is a long non-coding RNA gene on chromosome 17q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58591
Approved symbol	CNTNAP1-AS1
Name	CNTNAP1 antisense RNA 1
Location	17q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267765
Ensembl biotype	lncRNA
Entrez	142592824

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000592440

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000592440 — 2 exons

Exon	Start	End
ENSE00002766917	42699104	42699466
ENSE00002800396	42683187	42683542

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 88.70.

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primary visual cortex	UBERON:0002436	88.70	gold quality
superior frontal gyrus	UBERON:0002661	83.71	gold quality
right hemisphere of cerebellum	UBERON:0014890	83.33	gold quality
prefrontal cortex	UBERON:0000451	83.07	gold quality
frontal cortex	UBERON:0001870	82.48	gold quality
cerebellum	UBERON:0002037	82.29	gold quality
cerebellar cortex	UBERON:0002129	82.10	gold quality
cerebellar hemisphere	UBERON:0002245	81.99	gold quality
right frontal lobe	UBERON:0002810	81.60	gold quality
cerebral cortex	UBERON:0000956	80.14	gold quality
anterior cingulate cortex	UBERON:0009835	79.05	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	78.53	gold quality
colonic epithelium	UBERON:0000397	78.11	gold quality
Ammon’s horn	UBERON:0001954	77.78	gold quality
brain	UBERON:0000955	77.49	gold quality
Brodmann (1909) area 9	UBERON:0013540	75.79	gold quality
hypothalamus	UBERON:0001898	75.30	gold quality
temporal lobe	UBERON:0001871	74.85	gold quality
amygdala	UBERON:0001876	74.64	gold quality
caudate nucleus	UBERON:0001873	74.35	gold quality
putamen	UBERON:0001874	73.63	gold quality
pituitary gland	UBERON:0000007	73.29	gold quality
stromal cell of endometrium	CL:0002255	72.80	gold quality
right ovary	UBERON:0002118	72.72	gold quality
substantia nigra	UBERON:0002038	72.45	gold quality
ovary	UBERON:0000992	71.93	gold quality
adenohypophysis	UBERON:0002196	71.88	gold quality
left ovary	UBERON:0002119	71.81	gold quality
body of uterus	UBERON:0009853	71.57	gold quality
myometrium	UBERON:0001296	71.22	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.