CNTNAP2-AS1

Summary

CNTNAP2-AS1 (CNTNAP2 antisense RNA 1, HGNC:40657) is a long non-coding RNA gene on chromosome 7q35.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40657
Approved symbol	CNTNAP2-AS1
Name	CNTNAP2 antisense RNA 1
Location	7q35
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236795
Ensembl biotype	lncRNA
Entrez	101928700
RNAcentral	URS000075E6E3 — lncRNA, 2141 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000434887

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434887 — 4 exons

Exon	Start	End
ENSE00001645233	147082540	147083221
ENSE00001698338	147080934	147082088
ENSE00001747599	147097432	147097609
ENSE00001796618	147085693	147085822

Expression profiles

Bgee: expression breadth broad, 12 present calls, max score 75.23.

Top tissues by expression

165 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.23	gold quality
buccal mucosa cell	CL:0002336	67.36	silver quality
cortical plate	UBERON:0005343	59.76	silver quality
ganglionic eminence	UBERON:0004023	57.06	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	52.89	gold quality
amniotic fluid	UBERON:0000173	46.74	gold quality
vermiform appendix	UBERON:0001154	46.20	silver quality
skin of hip	UBERON:0001554	45.20	silver quality
tendon	UBERON:0000043	44.49	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
upper leg skin	UBERON:0004262	42.22	silver quality
blood	UBERON:0000178	42.10	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
adrenal gland	UBERON:0002369	41.37	gold quality
adult mammalian kidney	UBERON:0000082	41.34	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	41.18	silver quality
cardiac ventricle	UBERON:0002082	41.15	gold quality
bone marrow	UBERON:0002371	41.14	gold quality
heart	UBERON:0000948	41.11	gold quality
skeletal muscle tissue	UBERON:0001134	41.10	gold quality
palpebral conjunctiva	UBERON:0001812	41.10	gold quality
mucosa of paranasal sinus	UBERON:0005030	40.98	gold quality
vagina	UBERON:0000996	40.93	gold quality
nasal cavity mucosa	UBERON:0001826	40.63	gold quality
adipose tissue	UBERON:0001013	40.62	gold quality
primary visual cortex	UBERON:0002436	40.60	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.