CNTNAP5-DT

Summary

CNTNAP5-DT (CNTNAP5 divergent transcript, HGNC:55794) is a long non-coding RNA gene on chromosome 2q14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55794
Approved symbol	CNTNAP5-DT
Name	CNTNAP5 divergent transcript
Location	2q14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228400
Ensembl biotype	lncRNA
Entrez	107985820
RNAcentral	URS0000BC4524 — lncRNA, 3205 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000438816, ENST00000663071, ENST00000826251, ENST00000826252, ENST00000826253

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000438816 — 3 exons

Exon	Start	End
ENSE00001634311	124024675	124025173
ENSE00001706432	124016791	124016900
ENSE00003883435	124011984	124014528

Expression profiles

Bgee: expression breadth broad, 38 present calls, max score 68.06.

Top tissues by expression

38 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortex of kidney	UBERON:0001225	68.06	gold quality
superior frontal gyrus	UBERON:0002661	67.83	gold quality
cortical plate	UBERON:0005343	67.09	gold quality
prefrontal cortex	UBERON:0000451	65.72	gold quality
primary visual cortex	UBERON:0002436	64.54	gold quality
frontal cortex	UBERON:0001870	64.24	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	62.60	gold quality
Brodmann (1909) area 9	UBERON:0013540	62.53	gold quality
ventricular zone	UBERON:0003053	62.51	gold quality
cerebral cortex	UBERON:0000956	61.78	gold quality
right frontal lobe	UBERON:0002810	61.62	gold quality
anterior cingulate cortex	UBERON:0009835	60.61	gold quality
ganglionic eminence	UBERON:0004023	58.83	gold quality
nucleus accumbens	UBERON:0001882	57.99	gold quality
brain	UBERON:0000955	57.20	gold quality
multicellular organism	UBERON:0000468	55.75	gold quality
hypothalamus	UBERON:0001898	53.53	gold quality
Ammon’s horn	UBERON:0001954	53.07	gold quality
caudate nucleus	UBERON:0001873	52.20	gold quality
temporal lobe	UBERON:0001871	51.51	gold quality
amygdala	UBERON:0001876	51.48	gold quality
substantia nigra	UBERON:0002038	50.14	gold quality
hindlimb stylopod muscle	UBERON:0004252	49.05	gold quality
adrenal gland	UBERON:0002369	48.98	gold quality
islet of Langerhans	UBERON:0000006	48.69	silver quality
putamen	UBERON:0001874	48.69	gold quality
cerebellar hemisphere	UBERON:0002245	45.53	gold quality
right hemisphere of cerebellum	UBERON:0014890	45.47	gold quality
blood	UBERON:0000178	44.57	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	44.22	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.