COL18A1
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Also known as KSKNO1
Summary
COL18A1 (collagen type XVIII alpha 1 chain, HGNC:2195) is a protein-coding gene on chromosome 21q22.3, encoding Collagen alpha-1(XVIII) chain (P39060). Probably plays a major role in determining the retinal structure as well as in the closure of the neural tube.
This gene encodes the alpha chain of type XVIII collagen. This collagen is one of the multiplexins, extracellular matrix proteins that contain multiple triple-helix domains (collagenous domains) interrupted by non-collagenous domains. A long isoform of the protein has an N-terminal domain that is homologous to the extracellular part of frizzled receptors. Proteolytic processing at several endogenous cleavage sites in the C-terminal domain results in production of endostatin, a potent antiangiogenic protein that is able to inhibit angiogenesis and tumor growth. Mutations in this gene are associated with Knobloch syndrome. The main features of this syndrome involve retinal abnormalities, so type XVIII collagen may play an important role in retinal structure and in neural tube closure. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 80781 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Knobloch syndrome 1 (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 16
- Clinical variants (ClinVar): 3,099 total — 137 pathogenic, 62 likely-pathogenic
- Phenotypes (HPO): 75
- Druggable target: yes
- MANE Select transcript:
NM_001379500
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2195 |
| Approved symbol | COL18A1 |
| Name | collagen type XVIII alpha 1 chain |
| Location | 21q22.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KS, KNO1 |
| Ensembl gene | ENSG00000182871 |
| Ensembl biotype | protein_coding |
| OMIM | 120328 |
| Entrez | 80781 |
Gene structure
Transcript identifiers
Ensembl transcripts: 31 — 29 protein_coding, 1 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000342220, ENST00000355480, ENST00000359759, ENST00000423214, ENST00000459895, ENST00000473212, ENST00000651438, ENST00000859059, ENST00000859060, ENST00000859061, ENST00000859062, ENST00000859063, ENST00000859064, ENST00000859065, ENST00000859066, ENST00000859067, ENST00000859068, ENST00000859069, ENST00000930594, ENST00000930595, ENST00000930596, ENST00000930597, ENST00000930598, ENST00000930599, ENST00000930600, ENST00000930601, ENST00000930602, ENST00000970097, ENST00000970098, ENST00000970099, ENST00000970100
RefSeq mRNA: 3 — MANE Select: NM_001379500
NM_001379500, NM_030582, NM_130444
CCDS: CCDS42971, CCDS42972, CCDS77643
Canonical transcript exons
ENST00000651438 — 42 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001542501 | 45512188 | 45513720 |
| ENSE00001595082 | 45478327 | 45478353 |
| ENSE00001601591 | 45504416 | 45504556 |
| ENSE00001603969 | 45405379 | 45405473 |
| ENSE00001617212 | 45480467 | 45480520 |
| ENSE00001619008 | 45480700 | 45480858 |
| ENSE00001627003 | 45477411 | 45477487 |
| ENSE00001638049 | 45477750 | 45477965 |
| ENSE00001638654 | 45504011 | 45504054 |
| ENSE00001640622 | 45473895 | 45473981 |
| ENSE00001649344 | 45492535 | 45492564 |
| ENSE00001654135 | 45468242 | 45468786 |
| ENSE00001654943 | 45493163 | 45493225 |
| ENSE00001665017 | 45481963 | 45482025 |
| ENSE00001677445 | 45489486 | 45489521 |
| ENSE00001685925 | 45479902 | 45479964 |
| ENSE00001701626 | 45492687 | 45492713 |
| ENSE00001705636 | 45487447 | 45487509 |
| ENSE00001712155 | 45488418 | 45488444 |
| ENSE00001717154 | 45505838 | 45505966 |
| ENSE00001717282 | 45497599 | 45497661 |
| ENSE00001722709 | 45475476 | 45475535 |
| ENSE00001725836 | 45505358 | 45505431 |
| ENSE00001740104 | 45476351 | 45476480 |
| ENSE00001742681 | 45491225 | 45491314 |
| ENSE00001748652 | 45482795 | 45482821 |
| ENSE00001758572 | 45480070 | 45480156 |
| ENSE00001759875 | 45490275 | 45490346 |
| ENSE00001760845 | 45486861 | 45486992 |
| ENSE00001761211 | 45505134 | 45505278 |
| ENSE00001792883 | 45490836 | 45490871 |
| ENSE00002238826 | 45507561 | 45507593 |
| ENSE00003523340 | 45493501 | 45493575 |
| ENSE00003563378 | 45494862 | 45494915 |
| ENSE00003582147 | 45496500 | 45496568 |
| ENSE00003582883 | 45509356 | 45509601 |
| ENSE00003588504 | 45511111 | 45511226 |
| ENSE00003594559 | 45494545 | 45494571 |
| ENSE00003601528 | 45495358 | 45495432 |
| ENSE00003624748 | 45497050 | 45497092 |
| ENSE00003643178 | 45510064 | 45510261 |
| ENSE00003847686 | 45405165 | 45405241 |
Expression profiles
Bgee: expression breadth ubiquitous, 266 present calls, max score 99.37.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 61.4264 / max 1630.6824, expressed in 1479 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 189546 | 51.9617 | 1468 |
| 189549 | 8.9132 | 567 |
| 189548 | 0.5261 | 221 |
| 209343 | 0.0254 | 9 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right coronary artery | UBERON:0001625 | 99.37 | gold quality |
| popliteal artery | UBERON:0002250 | 99.32 | gold quality |
| tibial artery | UBERON:0007610 | 99.32 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.23 | gold quality |
| right lobe of liver | UBERON:0001114 | 99.21 | gold quality |
| aorta | UBERON:0000947 | 99.20 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.09 | gold quality |
| ascending aorta | UBERON:0001496 | 99.07 | gold quality |
| endocervix | UBERON:0000458 | 99.05 | gold quality |
| metanephros cortex | UBERON:0010533 | 99.05 | gold quality |
| left ovary | UBERON:0002119 | 98.97 | gold quality |
| right ovary | UBERON:0002118 | 98.96 | gold quality |
| left coronary artery | UBERON:0001626 | 98.95 | gold quality |
| coronary artery | UBERON:0001621 | 98.89 | gold quality |
| right uterine tube | UBERON:0001302 | 98.88 | gold quality |
| ectocervix | UBERON:0012249 | 98.10 | gold quality |
| left uterine tube | UBERON:0001303 | 97.95 | gold quality |
| liver | UBERON:0002107 | 97.64 | gold quality |
| body of uterus | UBERON:0009853 | 97.64 | gold quality |
| sural nerve | UBERON:0015488 | 97.64 | gold quality |
| tibial nerve | UBERON:0001323 | 97.47 | gold quality |
| adenohypophysis | UBERON:0002196 | 97.44 | gold quality |
| omental fat pad | UBERON:0010414 | 97.00 | gold quality |
| peritoneum | UBERON:0002358 | 96.99 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 96.97 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 96.97 | gold quality |
| blood vessel layer | UBERON:0004797 | 96.95 | gold quality |
| renal medulla | UBERON:0000362 | 96.88 | gold quality |
| right atrium auricular region | UBERON:0006631 | 96.84 | gold quality |
| pituitary gland | UBERON:0000007 | 96.78 | gold quality |
Single-cell (SCXA)
Detected in 22 experiment(s), a significant marker in 20.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6701 | yes | 1135.72 |
| E-HCAD-11 | yes | 1023.34 |
| E-MTAB-8142 | yes | 944.15 |
| E-GEOD-137537 | yes | 580.07 |
| E-ENAD-20 | yes | 138.20 |
| E-HCAD-31 | yes | 27.34 |
| E-MTAB-5061 | yes | 27.12 |
| E-MTAB-8410 | yes | 26.38 |
| E-GEOD-135922 | yes | 25.35 |
| E-GEOD-81547 | yes | 22.55 |
| E-HCAD-10 | yes | 17.96 |
| E-MTAB-6678 | yes | 13.49 |
| E-CURD-46 | yes | 10.58 |
| E-GEOD-134144 | yes | 8.54 |
| E-ANND-3 | yes | 8.06 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXA2, NFIC, SP1, TP53
Literature-anchored findings (GeneRIF, showing 40)
- Hypoxia down-regulates endostatin production by microvascular endothelial cells and pericytes (PMID:11700031)
- An increase of about one-third of normal endostatin serum levels may represent an effective therapeutic dose to significantly inhibit many solid tumours. (PMID:11781696)
- Endostatin causes G1 arrest of endothelial cells through inhibition of cyclin D1. (PMID:11815623)
- Endostatin plays a crucial role in endothelial tubule stabilization, maintenance and integrity during angiogenesis. (PMID:11911017)
- type XV and XVIII collagens are expressed in specialized basement membranes. (PMID:11937714)
- production in head and neck carcinoma modulated by hsp47 (PMID:12174873)
- Serum levels of angiogenin, basic fibroblast growth factor and endostatin in patients receiving intensive chemotherapy for acute myelogenous leukemia. (PMID:12209593)
- There is a positive correlation between the levels of tissue endostatin and malignancy grades in gliomas. The endostatin may be released near the tumor blood vessels with hyperplasia to counteract angiogenic stimuli in malignant gliomas. (PMID:12231538)
- Data are consistent with a model of endostatin with two binding sites: one mainly to laminin in the basement membrane and the other to heparan sulfates on the cell surface. (PMID:12237301)
- Collagen XVIII is a heparan sulfate proteoglycan associated with vascular amyloid beta and senile plaques in Alzheimer Disease. (PMID:12408231)
- Molecular analysis of collagen XVIII reveals novel mutations, presence of a third isoform, and possible genetic heterogeneity in Knobloch syndrome (PMID:12415512)
- Accumulation of endostatin/collagenXVIII in brains of patients who died with cerebral malaria. (PMID:12458056)
- Aberrant neuronal and paracellular deposition of endostatin in brains of patients with Alzheimer’s disease. (PMID:12486154)
- endostatin competes with fibronectin/RGD cyclic peptide to bind alpha 5 beta 1 integrin (PMID:12682293)
- A recombinant fusion version of this protein may be a therapeutic agent for breast cancer. (PMID:12839947)
- level of endostatin was lower in the group of chronic lymphocytic leukemia patients with progressive disease as compared to patients with stable disease (PMID:12857600)
- Data indicate that serum endostatin levels are higher in multiple myeloma patients than in healthy controls, with the highest values found during the active phase of the disease. (PMID:14514474)
- analyses of age-matched study groups revealed elevated medians of endostatin concentration for severely and mildly preeclamptic patients (PMID:14519482)
- Analysis of knobloch syndrome-associated mutations in COL18A1 and genetic variation in endostatin. (PMID:14695535)
- Plasma endostatin increased after surgical removal of primary tumor. Decreased intratumoral microvessels in patients with higher endostatin levels may be due to apoptosis-inducing effect of endostatin on microvascular endothelial cells. (PMID:14732364)
- Pleural mesothelial cells play a key role in the antiangiogenesis process by producing endostatin in the pleural space (PMID:14760864)
- there is a putative integrin-binding sequence with anti-migratory activity within endostatin (PMID:14973128)
- Lentivirus-mediated gene transfer might represent an effective strategy for expression of angioinhibitory peptides to achieve inhibition of human bladder cancer proliferation and tumor progression. (PMID:15014038)
- E-selectin is required for the antiangiogenic activity of endostatin in vivo and ex vivo and confers endostatin sensitivity to nonresponsive human endothelial cells in vitro (PMID:15148373)
- Collagen XVIII and enamelysin were co-localized in the developing enamel matrix and stratum intermedium and in the enamel-like tumor matrix of odontogenic tumors. (PMID:15296943)
- Expression of collagen XVIII in tumor tissue is strongly associated with a poorer outcome in non-small-cell lung cancer and correlates with elevated levels of circulating serum endostatin. (PMID:15328173)
- Naked endostatin plasmid intratumoral injection can get a similar gene transfection efficiency to liposome-DNA complex when used in situ in inhibiting cell growth. (PMID:15334690)
- Hypoxia downregulates the concentration of endostatin in the culture media of human endometrial stromal cells. (PMID:15374730)
- Spatial and temporal expression of endostatin/collagen XVIII in cartilaginous tissue and its inactivation of VEGF signalling suggests that it is important for development and maintenance of avascular zones in cartilage and fibrocartilage. (PMID:15464359)
- Endostatin diminishes the levels of nitric oxide (NO) whereas NO donors enhanced VEGF expression and collagen XVIII expression. (PMID:15540202)
- Increased endostatin/collagen XVIII expression correlated with hepatoma progression and predicted poor prognosis for patients with hepatocellular carcinoma. (PMID:15605080)
- angiostatic function is heparan sulfate-dependent, and in situ-binding of endostatin to endothelial cells is increased by heparan sulfates (PMID:15694132)
- Biologically active endostatin, generated by matrix metalloproteases from collagen XVIII, may participate in the inhibition of endothelial cell proliferation, migration and angiogenesis. (PMID:15950618)
- results demonstrate that there is a direct connection between dependence of endostatin activity on heparin-like glycosaminoglycans and its ability to antagonize bFGF (PMID:15985216)
- Overexpression of endostatin effectively inhibits the growth of ovarian cancer. (PMID:16008891)
- Elevated serum levels of endostatin were observed in patients with idiopathic pulmonary fibrosis (PMID:16025479)
- Mechanically induced VEGF is involved in the destruction and endostatin in the maintenance of avascular tissues of the bone and joint system. (review) (PMID:16320826)
- Significantly higher serum concentrations of endostatin are associated with lung carcinoma (PMID:16358965)
- data show that inhibition of PI3K/protein kinase B (PKB) increased endostatin-induced apoptosis, and that endostatin-induced cell death is physiologically linked to PKB-mediated cell survival through caspase-8 (PMID:16466644)
- The results indicate that the antiangiogenic functions of endostatin(ES) critically depend on the mode of delivery and the site of expression. (PMID:16793908)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | col18a1a | ENSDARG00000036558 |
| danio_rerio | col18a1b | ENSDARG00000095901 |
| mus_musculus | Col18a1 | ENSMUSG00000001435 |
| rattus_norvegicus | Col18a1 | ENSRNOG00000001229 |
Paralogs (37): COL9A2 (ENSG00000049089), COL23A1 (ENSG00000050767), COL11A1 (ENSG00000060718), COL17A1 (ENSG00000065618), COL5A3 (ENSG00000080573), COL4A4 (ENSG00000081052), COL16A1 (ENSG00000084636), COL9A3 (ENSG00000092758), COL20A1 (ENSG00000101203), COL1A1 (ENSG00000108821), COL9A1 (ENSG00000112280), COL7A1 (ENSG00000114270), COL21A1 (ENSG00000124749), COL5A1 (ENSG00000130635), COL4A2 (ENSG00000134871), COL2A1 (ENSG00000139219), COL6A1 (ENSG00000142156), COL6A2 (ENSG00000142173), EDA (ENSG00000158813), COL26A1 (ENSG00000160963), COL1A2 (ENSG00000164692), COL3A1 (ENSG00000168542), COL4A3 (ENSG00000169031), COL22A1 (ENSG00000169436), COL24A1 (ENSG00000171502), EMID1 (ENSG00000186998), COL4A1 (ENSG00000187498), COL4A5 (ENSG00000188153), COL25A1 (ENSG00000188517), COL27A1 (ENSG00000196739), COL13A1 (ENSG00000197467), COL4A6 (ENSG00000197565), COL11A2 (ENSG00000204248), COL5A2 (ENSG00000204262), COL15A1 (ENSG00000204291), COLQ (ENSG00000206561), COL28A1 (ENSG00000215018)
Protein
Protein identifiers
Collagen alpha-1(XVIII) chain — P39060 (reviewed: P39060)
All UniProt accessions (3): P39060, H7BXV5, H7C457
UniProt curated annotations — full annotation on UniProt →
Function. Probably plays a major role in determining the retinal structure as well as in the closure of the neural tube. May regulate extracellular matrix-dependent motility and morphogenesis of endothelial and non-endothelial cells; the function requires homotrimerization and implicates MAPK signaling. Potently inhibits endothelial cell proliferation and angiogenesis. May inhibit angiogenesis by binding to the heparan sulfate proteoglycans involved in growth factor signaling. Inhibits VEGFA-induced endothelial cell proliferation and migration. Seems to inhibit VEGFA-mediated signaling by blocking the interaction of VEGFA to its receptor KDR/VEGFR2. Modulates endothelial cell migration in an integrin-dependent manner implicating integrin ITGA5:ITGB1 and to a lesser extent ITGAV:ITGB3 and ITGAV:ITGB5. May negatively regulate the activity of homotrimeric non-collagenous domain 1.
Subunit / interactions. Forms homotrimers. Recombinant non-collagenous domain 1 has stronger affinity to NID1, HSPG2 and laminin-1:NID1 complex and lower affinity to FBLN1 and FBLN2 than endostatin. Monomeric. Interacts with KDR/VEGFR2. Interacts with the ITGA5:ITGB1 complex. Interacts with NID1, HSPG2, laminin-1:NID1 complex, FBLN1 and FBLN2.
Subcellular location. Secreted. Extracellular space. Extracellular matrix. Basement membrane Secreted. Basement membrane. Secreted Secreted.
Tissue specificity. Detected in placenta (at protein level). Present in multiple organs with highest levels in liver, lung and kidney.
Post-translational modifications. Prolines at the third position of the tripeptide repeating unit (G-X-Y) of the triple-helical regions are hydroxylated. Circulating endostatins are found as sialoglycoprotein and asialoglycoprotein structures. Undergoes proteolytic processing by CTSL/cathepsin-L and elastase-like proteases to generate both non-collagenous domain 1 trimers and endostatin monomers. In tissue extracts (brain, skeletal muscle, heart, kidney, testis and liver) predominantly bands of approximately 38 kDa are detected; recombinant non-collagenous domain 1 shows similar mobility. In vitro, several proteolytic cleavage sites in the non-collagenous domain 1 hinge region generating different endostatin-like peptides are reported.
Disease relevance. Knobloch syndrome 1 (KNO1) [MIM:267750] A developmental disorder primarily characterized by typical eye abnormalities, including high myopia, cataracts, dislocated lens, vitreoretinal degeneration, and retinal detachment, with occipital skull defects, which can range from occipital encephalocele to occult cutis aplasia. The disease is caused by variants affecting the gene represented in this entry. Glaucoma, primary closed-angle (GLCC) [MIM:618880] An autosomal dominant form of primary glaucoma, an ocular disease characterized by a marked increase of intraocular pressure causing damage to eye structures and function. GLCC is characterized by elevated intraocular pressure due to iridocorneal angle closure with retention of the aqueous humor in the anterior chamber. Iridocorneal angle changes are apparent in the fourth to fifth decade of life, and patients manifest age-related variation in the severity of glaucomatous damage. The disease may be caused by variants affecting the gene represented in this entry.
Polymorphism. There is an association between a polymorphism in position 1675 and prostate cancer. Heterozygous Asn-1675 individuals have a 2.5 times increased chance of developing prostate cancer as compared with homozygous Asp-1675 individuals.
Miscellaneous. Produced by alternative promoter usage. Produced by alternative splicing of isoform 1. Produced by alternative promoter usage.
Similarity. Belongs to the multiplexin collagen family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P39060-3 | 1, NC1-728 | yes |
| P39060-1 | 2, Long, NC-493 | |
| P39060-2 | 3, Short, NC1-303 |
RefSeq proteins (3): NP_001366429, NP_085059, NP_569711 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008160 | Collagen | Repeat |
| IPR010363 | DUF959_COL18_N | Domain |
| IPR010515 | Collagenase_NC10/endostatin | Domain |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR016186 | C-type_lectin-like/link_sf | Homologous_superfamily |
| IPR016187 | CTDL_fold | Homologous_superfamily |
| IPR020067 | Frizzled_dom | Domain |
| IPR035523 | Collagen_XVIII_Fz | Domain |
| IPR036790 | Frizzled_dom_sf | Homologous_superfamily |
| IPR045463 | XV/XVIII_trimerization_dom | Domain |
| IPR048287 | TSPN-like_N | Domain |
| IPR050149 | Collagen_superfamily | Family |
Pfam: PF01391, PF01392, PF06121, PF06482, PF20010
UniProt features (132 total): region of interest 27, compositionally biased region 26, sequence conflict 19, strand 13, helix 9, sequence variant 9, disulfide bond 7, glycosylation site 6, binding site 4, chain 3, splice variant 3, domain 2, signal peptide 1, turn 1, short sequence motif 1, modified residue 1
Structure
Experimental structures (PDB)
9 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9BNC | X-RAY DIFFRACTION | 1.4 |
| 9BNB | X-RAY DIFFRACTION | 1.5 |
| 3HSH | X-RAY DIFFRACTION | 1.8 |
| 1BNL | X-RAY DIFFRACTION | 2.9 |
| 3HON | X-RAY DIFFRACTION | 3 |
| 9BND | ELECTRON MICROSCOPY | 3.19 |
| 9BNF | ELECTRON MICROSCOPY | 3.33 |
| 9BNE | ELECTRON MICROSCOPY | 3.43 |
| 9BNG | ELECTRON MICROSCOPY | 3.73 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P39060-F1 | 51.77 | 0.16 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 1572; 1574; 1582; 1647
Post-translational modifications (1): 696
Disulfide bonds (7): 334–397, 344–390, 381–419, 408–443, 412–432, 1604–1744, 1706–1736
Glycosylation sites (6): 68, 129, 164, 889, 926, 1567
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-1442490 | Collagen degradation |
| R-HSA-1592389 | Activation of Matrix Metalloproteinases |
| R-HSA-1650814 | Collagen biosynthesis and modifying enzymes |
| R-HSA-2022090 | Assembly of collagen fibrils and other multimeric structures |
| R-HSA-216083 | Integrin cell surface interactions |
| R-HSA-3000157 | Laminin interactions |
| R-HSA-8948216 | Collagen chain trimerization |
MSigDB gene sets: 421 (showing top):
GOBP_ENDOTHELIAL_CELL_DEVELOPMENT, AGGAAGC_MIR5163P, GOBP_EPITHELIUM_DEVELOPMENT, WANG_CLIM2_TARGETS_UP, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, GOBP_RESPONSE_TO_ACID_CHEMICAL, GOBP_EPITHELIAL_CELL_DEVELOPMENT, GOCC_COLLAGEN_TRIMER, PEREZ_TP63_TARGETS, GOZGIT_ESR1_TARGETS_DN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, HUMMERICH_MALIGNANT_SKIN_TUMOR_UP, KANNAN_TP53_TARGETS_DN, LIEN_BREAST_CARCINOMA_METAPLASTIC
GO Biological Process (11): skeletal system development (GO:0001501), angiogenesis (GO:0001525), endothelial cell morphogenesis (GO:0001886), cell adhesion (GO:0007155), visual perception (GO:0007601), negative regulation of cell population proliferation (GO:0008285), response to xenobiotic stimulus (GO:0009410), animal organ morphogenesis (GO:0009887), response to hydrostatic pressure (GO:0051599), anatomical structure morphogenesis (GO:0009653), regulation of cell population proliferation (GO:0042127)
GO Molecular Function (3): extracellular matrix structural constituent conferring tensile strength (GO:0030020), metal ion binding (GO:0046872), protein binding (GO:0005515)
GO Cellular Component (7): extracellular region (GO:0005576), collagen trimer (GO:0005581), basement membrane (GO:0005604), obsolete extracellular space (GO:0005615), endoplasmic reticulum lumen (GO:0005788), extracellular matrix (GO:0031012), extracellular exosome (GO:0070062)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Degradation of the extracellular matrix | 2 |
| Collagen formation | 2 |
| Extracellular matrix organization | 2 |
| Collagen biosynthesis and modifying enzymes | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell population proliferation | 2 |
| system development | 1 |
| blood vessel morphogenesis | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| endothelial cell development | 1 |
| epithelial cell morphogenesis | 1 |
| cellular process | 1 |
| sensory perception of light stimulus | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| response to chemical | 1 |
| anatomical structure morphogenesis | 1 |
| animal organ development | 1 |
| response to stress | 1 |
| response to water | 1 |
| developmental process | 1 |
| anatomical structure development | 1 |
| regulation of cellular process | 1 |
| extracellular matrix structural constituent | 1 |
| cation binding | 1 |
| binding | 1 |
| cellular anatomical structure | 1 |
| protein-containing complex | 1 |
| extracellular matrix | 1 |
| endoplasmic reticulum | 1 |
| intracellular organelle lumen | 1 |
| external encapsulating structure | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
2112 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| COL18A1 | GPC1 | P35052 | 965 |
| COL18A1 | DR1 | Q01658 | 959 |
| COL18A1 | KDR | P35968 | 945 |
| COL18A1 | NUCLEOLIN | P19338 | 914 |
| COL18A1 | PLG | P00747 | 889 |
| COL18A1 | HSPG2 | P98160 | 865 |
| COL18A1 | GPC4 | O75487 | 840 |
| COL18A1 | THBS1 | P07996 | 824 |
| COL18A1 | FN1 | P02751 | 815 |
| COL18A1 | CERT1 | Q9Y5P4 | 797 |
| COL18A1 | ADAMTS8 | Q9UP79 | 789 |
| COL18A1 | FLT4 | P35916 | 772 |
| COL18A1 | VTN | P01141 | 745 |
| COL18A1 | FLT1 | P16057 | 739 |
| COL18A1 | FGF7 | P21781 | 693 |
IntAct
85 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| C1QTNF9 | C1QTNF9B | psi-mi:“MI:0914”(association) | 0.780 |
| P4HA2 | P4HB | psi-mi:“MI:0914”(association) | 0.740 |
| MMP9 | TIMP1 | psi-mi:“MI:0914”(association) | 0.640 |
| CAMKV | AP3B1 | psi-mi:“MI:0914”(association) | 0.640 |
| MMP2 | COL4A1 | psi-mi:“MI:0914”(association) | 0.640 |
| CRP | QSOX1 | psi-mi:“MI:0914”(association) | 0.530 |
| DEFA1 | MANBA | psi-mi:“MI:0914”(association) | 0.530 |
| C1QTNF9B | PLOD3 | psi-mi:“MI:0914”(association) | 0.530 |
| ADIPOQ | C1QL1 | psi-mi:“MI:0914”(association) | 0.530 |
| PLOD3 | COL4A1 | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| PLOD3 | PLOD2 | psi-mi:“MI:0914”(association) | 0.530 |
| OS9 | AGRN | psi-mi:“MI:0914”(association) | 0.530 |
| LAIR2 | LAMA5 | psi-mi:“MI:0914”(association) | 0.530 |
| COL18A1 | COL18A1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| APP | COL18A1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GNAT3 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| HSCB | RBP5 | psi-mi:“MI:0914”(association) | 0.350 |
| L1TD1 | MYO1C | psi-mi:“MI:0914”(association) | 0.350 |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| CCN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| TECPR1 | PLOD3 | psi-mi:“MI:0914”(association) | 0.350 |
| MAPT | SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
| PDGFRA | GXYLT2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (119): COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS), COL18A1 (Affinity Capture-MS)
ESM2 similar proteins: A0A060WQA3, A0MSJ1, A5PN28, A6NHN0, A8WGB1, C7DZK3, O35206, O60279, O88207, O89103, P07897, P13608, P13942, P16112, P20908, P20909, P25940, P39059, P39060, P39061, P55068, P83371, Q07092, Q14767, Q17RW2, Q28019, Q28062, Q28343, Q28670, Q29011, Q30D77, Q32S24, Q3MI99, Q4ZJM7, Q5QNQ9, Q60467, Q61245, Q61282, Q64739, Q6UXH8
Diamond homologs: O35206, P39059, P39060, P39061, P97401, Q5RF67, Q92765, Q95117, Q9IA95, Q80YN4, Q9Y5Q5, Q9Z319, A0A0K3AWM6, B3DIG4, G5ECQ2, O00144, O42579, O57328, O57329, O60353, O70421, O75084, O77438, O93274, P18537, P58421, Q08463, Q08464, Q13467, Q14332, Q24760, Q498S8, Q5BL72, Q5RCN4, Q61086, Q61088, Q61089, Q61090, Q61091, Q6FHJ7
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| COL18A1 | up-regulates | ECM_synthesis | |
| COL18A1 | up-regulates | “A5/b1 integrin” | binding |
| COL18A1 | down-regulates | Angiogenesis |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 93 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Collagen biosynthesis and modifying enzymes | 10 | 25.8× | 2e-09 |
| Collagen degradation | 5 | 13.3× | 4e-03 |
| Extra-nuclear estrogen signaling | 5 | 12.9× | 4e-03 |
| Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) | 7 | 9.2× | 2e-03 |
| Post-translational protein phosphorylation | 6 | 9.1× | 4e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| collagen fibril organization | 7 | 18.9× | 3e-05 |
| extracellular matrix organization | 7 | 10.3× | 1e-03 |
| positive regulation of cell migration | 8 | 6.0× | 5e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
3099 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 137 |
| Likely pathogenic | 62 |
| Uncertain significance | 1176 |
| Likely benign | 1257 |
| Benign | 253 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1013194 | NM_001379500.1(COL18A1):c.2917C>T (p.Gln973Ter) | Pathogenic |
| 1322108 | NM_001379500.1(COL18A1):c.1924-2_1924del | Pathogenic |
| 1354320 | NM_001379500.1(COL18A1):c.1488del (p.Gly497fs) | Pathogenic |
| 1356160 | NM_001379500.1(COL18A1):c.2102dup (p.Leu702fs) | Pathogenic |
| 1362146 | NM_001379500.1(COL18A1):c.394del (p.His132fs) | Pathogenic |
| 1364335 | NC_000021.9:g.45490838del | Pathogenic |
| 1366287 | NM_001379500.1(COL18A1):c.1187_1200dup (p.Pro401fs) | Pathogenic |
| 1366539 | NM_001379500.1(COL18A1):c.367del (p.Gly122_Val123insTer) | Pathogenic |
| 1367951 | NM_001379500.1(COL18A1):c.2969_2978dup (p.Gly994fs) | Pathogenic |
| 1381645 | NM_001379500.1(COL18A1):c.1459C>T (p.Arg487Ter) | Pathogenic |
| 1387227 | NM_001379500.1(COL18A1):c.1790dup (p.Gly598fs) | Pathogenic |
| 1395721 | NM_001379500.1(COL18A1):c.2558dup (p.Pro854fs) | Pathogenic |
| 1406673 | NM_001379500.1(COL18A1):c.3279del (p.Val1094fs) | Pathogenic |
| 1411374 | NM_001379500.1(COL18A1):c.481C>T (p.Gln161Ter) | Pathogenic |
| 1416390 | NM_001379500.1(COL18A1):c.2927_2978del (p.Pro976fs) | Pathogenic |
| 1416901 | NM_001379500.1(COL18A1):c.2118del (p.Gly707fs) | Pathogenic |
| 1417839 | NM_001379500.1(COL18A1):c.3044_3062del (p.Pro1015fs) | Pathogenic |
| 1424228 | NM_001379500.1(COL18A1):c.2786dup (p.Gly930fs) | Pathogenic |
| 1426630 | NM_001379500.1(COL18A1):c.2781dup (p.Gly928fs) | Pathogenic |
| 1429000 | NM_001379500.1(COL18A1):c.2111del (p.Gly704fs) | Pathogenic |
| 1429645 | NM_001379500.1(COL18A1):c.2707C>T (p.Gln903Ter) | Pathogenic |
| 1430023 | NM_001379500.1(COL18A1):c.2979_2988dup (p.Ser997fs) | Pathogenic |
| 1430381 | NM_001379500.1(COL18A1):c.2958_2985del (p.Pro987fs) | Pathogenic |
| 1432778 | NM_001379500.1(COL18A1):c.2669_2670insT (p.Gly892fs) | Pathogenic |
| 1440746 | NM_001379500.1(COL18A1):c.3306dup (p.Tyr1103fs) | Pathogenic |
| 1442812 | NM_001379500.1(COL18A1):c.1070del (p.Pro357fs) | Pathogenic |
| 1444038 | NM_001379500.1(COL18A1):c.2525del (p.Pro842fs) | Pathogenic |
| 1451864 | NM_001379500.1(COL18A1):c.3048dup (p.Pro1017fs) | Pathogenic |
| 1452039 | NM_001379500.1(COL18A1):c.2824_2840del (p.Gly942fs) | Pathogenic |
| 1452623 | NM_001379500.1(COL18A1):c.3053dup (p.Gly1019fs) | Pathogenic |
SpliceAI
6648 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 21:45468238:GCA:G | acceptor_loss | 1.0000 |
| 21:45468239:CAG:C | acceptor_gain | 1.0000 |
| 21:45468240:A:AC | acceptor_loss | 1.0000 |
| 21:45468240:A:AG | acceptor_gain | 1.0000 |
| 21:45468240:AGA:A | acceptor_gain | 1.0000 |
| 21:45468240:AGAGC:A | acceptor_gain | 1.0000 |
| 21:45468241:G:A | acceptor_loss | 1.0000 |
| 21:45468241:G:GC | acceptor_gain | 1.0000 |
| 21:45468241:GA:G | acceptor_gain | 1.0000 |
| 21:45468241:GAG:G | acceptor_gain | 1.0000 |
| 21:45468241:GAGC:G | acceptor_gain | 1.0000 |
| 21:45468241:GAGCG:G | acceptor_gain | 1.0000 |
| 21:45473893:AGGG:A | acceptor_gain | 1.0000 |
| 21:45473894:GGGG:G | acceptor_gain | 1.0000 |
| 21:45476345:CTCCA:C | acceptor_loss | 1.0000 |
| 21:45476346:TCCA:T | acceptor_loss | 1.0000 |
| 21:45476347:CCAGG:C | acceptor_loss | 1.0000 |
| 21:45476349:AG:A | acceptor_gain | 1.0000 |
| 21:45476350:G:A | acceptor_loss | 1.0000 |
| 21:45476350:GG:G | acceptor_gain | 1.0000 |
| 21:45476350:GGGC:G | acceptor_gain | 1.0000 |
| 21:45476477:GGAG:G | donor_gain | 1.0000 |
| 21:45476478:G:GT | donor_gain | 1.0000 |
| 21:45476478:GAG:G | donor_gain | 1.0000 |
| 21:45476478:GAGG:G | donor_loss | 1.0000 |
| 21:45476479:AGG:A | donor_loss | 1.0000 |
| 21:45476480:GGTAA:G | donor_loss | 1.0000 |
| 21:45476481:G:GG | donor_gain | 1.0000 |
| 21:45477409:A:AG | acceptor_gain | 1.0000 |
| 21:45477410:G:GG | acceptor_gain | 1.0000 |
AlphaMissense
8469 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 21:45510133:T:A | C1604S | 0.999 |
| 21:45510133:T:C | C1604R | 0.999 |
| 21:45510134:G:C | C1604S | 0.999 |
| 21:45510135:C:G | C1604W | 0.999 |
| 21:45512363:T:C | C1744R | 0.999 |
| 21:45512364:G:A | C1744Y | 0.999 |
| 21:45512365:C:G | C1744W | 0.999 |
| 21:45510124:G:C | D1601H | 0.998 |
| 21:45510134:G:A | C1604Y | 0.998 |
| 21:45510134:G:T | C1604F | 0.998 |
| 21:45511134:G:C | W1654C | 0.998 |
| 21:45511134:G:T | W1654C | 0.998 |
| 21:45512204:T:A | W1691R | 0.998 |
| 21:45512204:T:C | W1691R | 0.998 |
| 21:45512206:G:C | W1691C | 0.998 |
| 21:45512206:G:T | W1691C | 0.998 |
| 21:45512363:T:A | C1744S | 0.998 |
| 21:45512364:G:C | C1744S | 0.998 |
| 21:45510071:T:C | L1583P | 0.997 |
| 21:45510125:A:T | D1601V | 0.997 |
| 21:45510255:C:A | N1644K | 0.997 |
| 21:45510255:C:G | N1644K | 0.997 |
| 21:45511132:T:A | W1654R | 0.997 |
| 21:45511132:T:C | W1654R | 0.997 |
| 21:45512364:G:T | C1744F | 0.997 |
| 21:45512370:A:T | E1746V | 0.997 |
| 21:45512374:C:A | N1747K | 0.997 |
| 21:45512374:C:G | N1747K | 0.997 |
| 21:45510077:C:A | A1585E | 0.996 |
| 21:45510175:C:A | R1618S | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000021366 (21:45469869 T>C), RS1000048687 (21:45479436 A>G), RS1000063134 (21:45495392 A>C), RS1000074584 (21:45443531 T>A,C,G), RS1000099247 (21:45496904 CCT>C), RS1000100726 (21:45499221 T>A,C), RS1000106408 (21:45493127 AGCC>A), RS1000124397 (21:45433729 A>G), RS1000130961 (21:45474397 G>A), RS1000147406 (21:45415338 A>G), RS1000177591 (21:45447031 G>A), RS1000179253 (21:45405005 G>A,C,T), RS1000179804 (21:45508647 G>A), RS1000183639 (21:45474127 G>A), RS1000192775 (21:45439244 C>T)
Disease associations
OMIM: gene MIM:120328 | disease phenotypes: MIM:267750, MIM:618880, MIM:116200, MIM:268000, MIM:602482, MIM:158350
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Knobloch syndrome 1 | Definitive | Autosomal recessive |
| Knobloch syndrome | Strong | Autosomal recessive |
| hereditary glaucoma, primary closed-angle | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Knobloch syndrome 1 | Definitive | AR |
Mondo (12): Knobloch syndrome (MONDO:0800166), hereditary glaucoma, primary closed-angle (MONDO:0030038), Knobloch syndrome 1 (MONDO:0800167), ocular motility disease (MONDO:0001584), pathologic nystagmus (MONDO:0004843), cataract (MONDO:0005129), inherited retinal dystrophy (MONDO:0019118), retinal disorder (MONDO:0005283), retinitis pigmentosa (MONDO:0019200), Axenfeld-Rieger syndrome type 3 (MONDO:0011233), Cowden syndrome 1 (MONDO:0008021), (MONDO:0009977)
Orphanet (4): Knobloch syndrome (Orphanet:1571), OBSOLETE: Inherited retinal disorder (Orphanet:71862), Retinitis pigmentosa (Orphanet:791), Axenfeld-Rieger syndrome (Orphanet:782)
HPO phenotypes
75 total (30 of 75 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000075 | Renal duplication |
| HP:0000076 | Vesicoureteral reflux |
| HP:0000081 | Duplicated collecting system |
| HP:0000126 | Hydronephrosis |
| HP:0000238 | Hydrocephalus |
| HP:0000252 | Microcephaly |
| HP:0000275 | Narrow face |
| HP:0000286 | Epicanthus |
| HP:0000341 | Narrow forehead |
| HP:0000414 | Bulbous nose |
| HP:0000486 | Strabismus |
| HP:0000501 | Glaucoma |
| HP:0000505 | Visual impairment |
| HP:0000506 | Telecanthus |
| HP:0000518 | Cataract |
| HP:0000519 | Developmental cataract |
| HP:0000529 | Progressive visual loss |
| HP:0000533 | Chorioretinal atrophy |
| HP:0000541 | Retinal detachment |
| HP:0000543 | Optic disc pallor |
| HP:0000545 | Myopia |
| HP:0000572 | Visual loss |
| HP:0000585 | Band keratopathy |
| HP:0000608 | Macular degeneration |
| HP:0000639 | Nystagmus |
| HP:0000640 | Gaze-evoked nystagmus |
| HP:0000666 | Horizontal nystagmus |
| HP:0000667 | Phthisis bulbi |
GWAS associations
16 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001530_12 | Hippocampal atrophy | 8.000000e-07 |
| GCST004138_1 | Early-onset Parkinson’s disease | 8.000000e-240 |
| GCST004952_39 | Ankle injury | 4.000000e-08 |
| GCST005024_90 | Pursuit maintenance gain | 2.000000e-06 |
| GCST006143_14 | Bone mineral density (total hip) | 8.000000e-06 |
| GCST006585_1716 | Blood protein levels | 6.000000e-10 |
| GCST006613_1 | Triglycerides | 1.000000e-28 |
| GCST006614_100 | Total cholesterol levels | 4.000000e-09 |
| GCST007849_2 | Triglycerides | 2.000000e-11 |
| GCST007849_4 | Triglycerides | 2.000000e-16 |
| GCST010241_75 | Apolipoprotein A1 levels | 8.000000e-14 |
| GCST010242_167 | HDL cholesterol levels | 1.000000e-11 |
| GCST010573_3 | Cardiorespiratory fitness (800m run time) | 1.000000e-08 |
| GCST010703_141 | Brain morphology (MOSTest) | 5.000000e-08 |
| GCST90002401_341 | Platelet distribution width | 1.000000e-11 |
| GCST90010427_27 | Left–right brain asymmetry | 8.000000e-10 |
EFO canonical traits (11, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005039 | hippocampal atrophy |
| EFO:1002021 | ankle injury |
| EFO:0008433 | pursuit maintenance gain measurement |
| EFO:0007702 | hip bone mineral density |
| EFO:0004530 | triglyceride measurement |
| EFO:0004574 | total cholesterol measurement |
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0004328 | exercise test |
| EFO:0004346 | neuroimaging measurement |
| EFO:0007984 | platelet component distribution width |
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002386 | Cataract | C11.510.245 |
| D009759 | Nystagmus, Pathologic | C10.292.562.675; C11.590.400 |
| D012164 | Retinal Diseases | C11.768 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| D012174 | Retinitis Pigmentosa | C11.270.684; C11.768.585.658.500; C16.320.290.684 |
| C537209 | Knobloch syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2364188 (PROTEIN COMPLEX GROUP)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
6 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs7499 | COL18A1, SLC19A1 | 0.00 | 0 | ||
| rs2274808 | COL18A1 | 0.00 | 0 | ||
| rs7279445 | COL18A1, SLC19A1 | 0.00 | 0 | ||
| rs9977268 | COL18A1, SLC19A1 | 3 | 0.00 | 1 | methotrexate |
| rs11702425 | COL18A1, SLC19A1 | 0.00 | 0 | ||
| rs17004785 | COL18A1, SLC19A1 | 0.00 | 0 |
CTD chemical–gene interactions
97 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects methylation, decreases expression, increases expression | 4 |
| Aflatoxin B1 | affects expression, decreases expression, increases methylation | 4 |
| Benzo(a)pyrene | affects methylation, decreases expression, decreases methylation, increases methylation | 3 |
| Valproic Acid | decreases expression, increases expression | 3 |
| Cyclosporine | decreases expression, decreases methylation | 3 |
| Resveratrol | decreases expression, affects cotreatment | 2 |
| Vehicle Emissions | decreases expression, decreases reaction, increases abundance, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 2 |
| Genistein | increases expression, decreases expression | 2 |
| Particulate Matter | decreases expression, decreases reaction, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol F | decreases expression, affects cotreatment | 1 |
| methyleugenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects expression | 1 |
| deoxynivalenol | decreases expression | 1 |
| titanium dioxide | increases expression, affects binding | 1 |
| 11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acid | decreases methylation, increases abundance | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| cobaltous chloride | decreases expression, decreases reaction, increases chemical synthesis | 1 |
| butyraldehyde | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| benzo(e)pyrene | increases methylation, decreases methylation | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| triacsin C | decreases expression | 1 |
| nivalenol | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D0QH | ZSZOCi001-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00273221 | PHASE4 | UNKNOWN | Combined Phacotube vs Phacotrabeculectomy:A Randomized Controlled Trial |
| NCT00312299 | PHASE4 | COMPLETED | Posterior Capsule Opacification Study |
| NCT00345046 | PHASE4 | COMPLETED | A Comparison of Three Different Formulations of Prednisolone Acetate 1% |
| NCT00347243 | PHASE4 | COMPLETED | Wavefront Analisys and Contrast Sensitivity of Spherical and Aspherical Intraocular Lenses |
| NCT00347503 | PHASE4 | COMPLETED | Aqueous Concentrations and PGE2 Inhibition of Ketorolac 0.4% vs. Bromfenac 0.09% in Cataract Patients |
| NCT00348244 | PHASE4 | COMPLETED | Ketorolac vs. Steroid in the Prevention of CME |
| NCT00348270 | PHASE4 | COMPLETED | Comparison of the Quality of Vision Provided by AMO Tecnis Z9000 and Alcon Laboratories MA60 Acrysof Posterior Chamber Intraocular Lenses |
| NCT00348582 | PHASE4 | COMPLETED | Acular LS vs. Nevanac in Post op Inflammation Following Cataract Surgery |
| NCT00348621 | PHASE4 | COMPLETED | A Study of Interventions to Reduce Disability From Visual Loss in Nursing Home Residents |
| NCT00349583 | PHASE4 | COMPLETED | Efficacy of Topical Cyclosporine Versus Tears for Improving Visual Outcomes Following Multifocal IOL Implantation |
| NCT00355446 | PHASE4 | COMPLETED | Bioavailability of Bimatoprost Ophthalmic Solution in Human Aqueous. |
| NCT00386438 | PHASE4 | COMPLETED | Efficacy of Honan Balloon in Intraocular Pressure Reduction Before Phacoemulsification |
| NCT00392275 | PHASE4 | COMPLETED | Penetrance of Third Generation Fluoroquinolones in Eyes With Functioning Filtering Blebs |
| NCT00428363 | PHASE4 | COMPLETED | Effect of Optic Edge Design in a Silicone Intraocular Lens on Posterior Capsule Opacification |
| NCT00449267 | PHASE4 | COMPLETED | Aurolab Hydrophobic Foldable Intraocular Lens Study |
| NCT00459303 | PHASE4 | COMPLETED | Comparison of Functional Vision Provided by AMO Tecnis Z9000 and Alcon SA60AT Acrysof |
| NCT00469690 | PHASE4 | COMPLETED | Aqueous Concentrations and PGE2 Inhibition of Ketorolac 0.4% vs. Bromfenac 0.09% in Cataract Patients: Trough Drug Effects |
| NCT00576485 | PHASE4 | COMPLETED | Spherical Aberration and Contrast Sensitivity in IOLs |
| NCT00612729 | PHASE4 | COMPLETED | Light Filters in Intraocular Lenses (IOLs) and Its Influence on Colour and Contrast Vision. |
| NCT00612781 | PHASE4 | COMPLETED | Yellow Versus White Study |
| NCT00630019 | PHASE4 | COMPLETED | Ocular Tissue Levels of 1.5% Levofloxacin Ophthalmic Solution Compared to an Active Comparator |
| NCT00673803 | PHASE4 | COMPLETED | Influence of Two Different Preloaded Intraocular Lens (IOLs) on Posterior Capsule Opacification |
| NCT00684138 | PHASE4 | COMPLETED | ACRYSOF® ReSTOR® Aspheric +3.0 D Add Power Intraocular Lens (IOL) |
| NCT00698724 | PHASE4 | COMPLETED | Comparing Optical Coherence Tomography (OCT) and Visual Acuity Outcomes in Subjects Undergoing Cataract Surgery, Who Receive Xibrom Ophthalmic Solution and Standard Presurgical Care vs. Xibrom Ophthalmic Solution Plus Prednisolone Acetate 1% and Standard Presurgical Care |
| NCT00710905 | PHASE4 | TERMINATED | Visual Function With Contralateral AcrySof® ReSTOR® Aspheric SN6AD1 and SN6AD3 |
| NCT00710931 | PHASE4 | COMPLETED | Visual Function With Bilateral AcrySof® ReSTOR® Aspheric SN6AD1 |
| NCT00711347 | PHASE4 | COMPLETED | Intraoperative Floppy Iris Syndrome |
| NCT00712244 | PHASE4 | COMPLETED | DisCoVisc Versus DuoVisc, Healon5 and AmVisc Plus |
| NCT00717080 | PHASE4 | COMPLETED | The Role of Capsular Tension Ring (CTR) in Anterior Capsular Contraction |
| NCT00719732 | PHASE4 | COMPLETED | Visual Function After Implantation of Bilateral AcrySof ReSTOR Aspheric +3 |
| NCT00721253 | PHASE4 | COMPLETED | Visual Outcomes of Subjects Bilaterally Implanted With ReSTOR Aspheric +4 vs. Tecnis or Acri.LISA |
| NCT00731640 | PHASE4 | COMPLETED | Contralateral ReSTOR / Monofocal or Phakic Eye |
| NCT00732030 | PHASE4 | COMPLETED | Low Cylinder Toric |
| NCT00758199 | PHASE4 | COMPLETED | Determination of Optimum Duration of Treatment With Bromfenac (Xibrom) Eyedrops Following Cataract Surgery |
| NCT00760058 | PHASE4 | WITHDRAWN | Visual Outcome and Visual Quality After Bilateral Implantation of the AcrySof® IQ IOL Compared to MI60® and Tecnis® IOL |
| NCT00760487 | PHASE4 | COMPLETED | Visual Function After Implantation of Bilateral AcrySof® Toric Natural Intraocular Lens |
| NCT00761488 | PHASE4 | WITHDRAWN | Recommendations for Monitoring Clinical Experience Following Implantation of the AcrySof® Toric |
| NCT00763360 | PHASE4 | COMPLETED | To Compare the Ability of DiscoVisc® OVD to Protect the Corneal Endothelium and Maintain Anterior Chamber Space With Healon® and Amvisc® PLUS During Cataract Surgery. |
| NCT00786370 | PHASE4 | COMPLETED | Dexmedetomidine vs. Propofol for Cataract Surgery |
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Related Atlas pages
- Associated diseases: hereditary glaucoma, primary closed-angle, Knobloch syndrome 1, Knobloch syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Axenfeld-Rieger syndrome type 3, cataract, Cowden syndrome 1, hereditary glaucoma, primary closed-angle, Knobloch syndrome, Knobloch syndrome 1, ocular motility disease, pathologic nystagmus, retinal disorder