COL4A4
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Also known as CA44
Summary
COL4A4 (collagen type IV alpha 4 chain, HGNC:2206) is a protein-coding gene on chromosome 2q36.3, encoding Collagen alpha-4(IV) chain (P53420). Type IV collagen is the major structural component of glomerular basement membranes (GBM), forming a ‘chicken-wire’ meshwork together with laminins, proteoglycans and entactin/nidogen.
This gene encodes one of the six subunits of type IV collagen, the major structural component of basement membranes. This particular collagen IV subunit, however, is only found in a subset of basement membranes. Like the other members of the type IV collagen gene family, this gene is organized in a head-to-head conformation with another type IV collagen gene so that each gene pair shares a common promoter. Mutations in this gene are associated with type II autosomal recessive Alport syndrome (hereditary glomerulonephropathy) and with familial benign hematuria (thin basement membrane disease). Two transcripts, differing only in their transcription start sites, have been identified for this gene and, as is common for collagen genes, multiple polyadenylation sites are found in the 3’ UTR.
Source: NCBI Gene 1286 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Alport syndrome (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 13
- Clinical variants (ClinVar): 3,774 total — 257 pathogenic, 517 likely-pathogenic
- Phenotypes (HPO): 30
- Druggable target: yes
- MANE Select transcript:
NM_000092
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2206 |
| Approved symbol | COL4A4 |
| Name | collagen type IV alpha 4 chain |
| Location | 2q36.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CA44 |
| Ensembl gene | ENSG00000081052 |
| Ensembl biotype | protein_coding |
| OMIM | 120131 |
| Entrez | 1286 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 5 protein_coding, 2 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000396625, ENST00000643379, ENST00000682098, ENST00000682248, ENST00000682548, ENST00000683508, ENST00000684257, ENST00000684524
RefSeq mRNA: 1 — MANE Select: NM_000092
NM_000092
CCDS: CCDS42828
Canonical transcript exons
ENST00000396625 — 48 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001071074 | 227059405 | 227059623 |
| ENSE00001124594 | 227022048 | 227022173 |
| ENSE00001124612 | 227002714 | 227007588 |
| ENSE00001135763 | 227012181 | 227012297 |
| ENSE00001135841 | 227008018 | 227008304 |
| ENSE00001135926 | 227094125 | 227094289 |
| ENSE00001135929 | 227098694 | 227098798 |
| ENSE00001305015 | 227057439 | 227057600 |
| ENSE00001311859 | 227010313 | 227010501 |
| ENSE00001313262 | 227032148 | 227032276 |
| ENSE00001315992 | 227027902 | 227028009 |
| ENSE00001321359 | 227031945 | 227032055 |
| ENSE00001326349 | 227055945 | 227056115 |
| ENSE00001328587 | 227030443 | 227030598 |
| ENSE00001331272 | 227077894 | 227078077 |
| ENSE00001377510 | 227050977 | 227051158 |
| ENSE00001385501 | 227042148 | 227042255 |
| ENSE00001387144 | 227054594 | 227054737 |
| ENSE00001387733 | 227043077 | 227043184 |
| ENSE00001400869 | 227033410 | 227033481 |
| ENSE00001403233 | 227121014 | 227121148 |
| ENSE00001404531 | 227052305 | 227052412 |
| ENSE00001414504 | 227060136 | 227060243 |
| ENSE00001422171 | 227080443 | 227080549 |
| ENSE00001431479 | 227088653 | 227088816 |
| ENSE00001434411 | 227118645 | 227118761 |
| ENSE00001461298 | 227047475 | 227047549 |
| ENSE00001461299 | 227050068 | 227050131 |
| ENSE00001461300 | 227062530 | 227062598 |
| ENSE00001461302 | 227082115 | 227082187 |
| ENSE00001461305 | 227089868 | 227089957 |
| ENSE00001461306 | 227099620 | 227099689 |
| ENSE00001461307 | 227101504 | 227101557 |
| ENSE00001461308 | 227101865 | 227101909 |
| ENSE00001461309 | 227102789 | 227102848 |
| ENSE00001461310 | 227103144 | 227103197 |
| ENSE00001461311 | 227103972 | 227104052 |
| ENSE00001461312 | 227108581 | 227108622 |
| ENSE00001461313 | 227108833 | 227108868 |
| ENSE00001461314 | 227109224 | 227109286 |
| ENSE00001461316 | 227111678 | 227111713 |
| ENSE00001461317 | 227114628 | 227114696 |
| ENSE00001461319 | 227119895 | 227119939 |
| ENSE00001461320 | 227140161 | 227140238 |
| ENSE00001461321 | 227144516 | 227144558 |
| ENSE00001461322 | 227147413 | 227147584 |
| ENSE00001831933 | 227164007 | 227164205 |
| ENSE00002511083 | 227025802 | 227025810 |
Expression profiles
Bgee: expression breadth ubiquitous, 187 present calls, max score 87.51.
FANTOM5 (CAGE): breadth broad, TPM avg 2.8577 / max 134.8880, expressed in 516 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 34338 | 1.8190 | 428 |
| 34339 | 0.7027 | 294 |
| 34341 | 0.2233 | 104 |
| 34337 | 0.0900 | 34 |
| 34340 | 0.0227 | 7 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| renal medulla | UBERON:0000362 | 87.51 | gold quality |
| metanephros cortex | UBERON:0010533 | 86.40 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 81.91 | gold quality |
| cauda epididymis | UBERON:0004360 | 81.77 | gold quality |
| right coronary artery | UBERON:0001625 | 80.26 | gold quality |
| coronary artery | UBERON:0001621 | 79.80 | gold quality |
| left coronary artery | UBERON:0001626 | 79.70 | gold quality |
| caput epididymis | UBERON:0004358 | 79.48 | gold quality |
| visceral pleura | UBERON:0002401 | 79.45 | gold quality |
| ascending aorta | UBERON:0001496 | 79.36 | gold quality |
| thoracic aorta | UBERON:0001515 | 79.34 | gold quality |
| kidney | UBERON:0002113 | 79.20 | gold quality |
| right atrium auricular region | UBERON:0006631 | 79.15 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 78.95 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 78.94 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 78.92 | gold quality |
| pituitary gland | UBERON:0000007 | 78.86 | gold quality |
| cortex of kidney | UBERON:0001225 | 78.85 | gold quality |
| thyroid gland | UBERON:0002046 | 78.77 | gold quality |
| cardiac atrium | UBERON:0002081 | 78.70 | gold quality |
| biceps brachii | UBERON:0001507 | 78.08 | silver quality |
| mucosa of stomach | UBERON:0001199 | 77.81 | gold quality |
| metanephros | UBERON:0000081 | 77.73 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 77.55 | gold quality |
| seminal vesicle | UBERON:0000998 | 77.49 | gold quality |
| adenohypophysis | UBERON:0002196 | 77.38 | gold quality |
| adrenal cortex | UBERON:0001235 | 76.69 | gold quality |
| left adrenal gland | UBERON:0001234 | 76.68 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 76.53 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 76.29 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.69 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): LMX1B
miRNA regulators (miRDB)
170 targeting COL4A4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-6759-5P | 99.99 | 66.54 | 785 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-6793-5P | 99.97 | 65.95 | 758 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-767-5P | 99.95 | 70.85 | 993 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
Literature-anchored findings (GeneRIF, showing 40)
- COL4A4 mutation: from familial hematuria to autosomal-dominant or recessive Alport syndrome. (PMID:12028435)
- No collagen alpha3(IV) or alpha4(IV) in lens capsules of 54-day human embryos, while collagen alpha3(IV) and alpha4(IV) were detected in adult humans. (PMID:12225806)
- Six of seven (86%) individuals with autosomal recessive Alport syndrome who had 3 novel COL4A4 mutations in the compound heterozygous or homozygous forms developed renal failure in adulthood, as well as hearing loss and ocular abnormalities. (PMID:12325029)
- Two stop codons (R1377X and 2788/91delG) and a glycine substitution (G960R) resulted in hematuria. S969X mutation. (PMID:12631110)
- COL4A4 gene is associted with Alport’s syndrome in which males and females are severely affected. (PMID:12768082)
- In kidney, when expressed onto Col4a3(-/-) background, human alpha3(IV) chain restored expression of and co-assembled with mouse alpha4 and alpha5(IV) chains at sites where human alpha3(IV) was expressed. All three chains required for network assembly. (PMID:14507670)
- Mutations in COL4A3 and COL4A4 genes produce alteration to glomerular basement membrane(GBM). Phenotype may range from thinned GBM ro GBM thickening, lamellation and splitting. Review. (PMID:15280517)
- 40% of families with TBMN have hematuria that segregates with the corresponding locus ( COL4A3/COL4A4 ), and identical mutations occur in both conditions. (PMID:15880327)
- novel mutations identified during routine molecular diagnostics for Alport syndrome (PMID:15954103)
- Persistent familial hematuria in children often occurs at the COLA4A locus for thin membrane nephropathy. (PMID:16235097)
- The molecular analysis demonstrated that the probands were genetic compounds for two different mutations in the COL4A4 gene pinpointing to the correct diagnosis of autosomal recessive ATS. (PMID:16338941)
- Possibly mutated in Alport syndrome (review) (PMID:16895672)
- A clinical evaluation of probands and their relatives of the five families carrying mutations in either the COL4A3 or the COL4A4 gene was carried out to underline the natural history of the autosomal recessive ATS. (PMID:16970251)
- Polymorphisms in thus genes is particularly important to enable diagnostic laboratories to distinguish mutations from uncommon normal variants. (PMID:17216251)
- 16 novel mutations identified in COL4A3, COL4A4 & COL4A5 genes in Slovenian families with Alport syndrome & benign familial hematuria (BFH); 4 heterozygous mutations in COL4A4 (2 splice site, 1 in-frame deletion & 1 missense) identified in BFH (PMID:17396119)
- COL4A3/COL4A4 mutations predispose some patients to FSGS and chronic renal failure. (PMID:17942953)
- our data show many patients with collagen IV mutations may develop focal & segmental glomerulosclerosis, on top of thin basement membrane nephropathy & microscopic hematuria, which often progresses to chronic renal failure or end-stage renal disease (PMID:18661361)
- analysis of noncollagenous sites encoding specific interactions and quaternary assembly of alpha 3 alpha 4 alpha 5(IV) collagen (PMID:18930919)
- On the basis of linked-function analysis, we demonstrated that collagen binding domain of MMP2 tuned the cleavage of collagen IV by MMP9, presumably by inducing a ligand-linked structural change on the type IV collagen. (PMID:19109975)
- It is difficult to make a differential diagnosis with a benign familial haematuria due to heterozygous mutations of COL4A4 and COL4A3, especially in young patients, and with a X-linked form of Alport syndrome in families where only females are affected. (PMID:19129241)
- association of heterozygous COL4A3/COL4A4 mutations with familial microscopic haematuria, thin basement membrane nephropathy and the late development of familial proteinuria, CRF, and ESRD, due to FSGS (PMID:19357112)
- Novel variants in the COL4A4 gene in Korean patients with thin basement membrane nephropathy. (PMID:19675380)
- This is the first mutational screening of COL4A3 and COL4A4 genes in keratoconus patients to establish the status of these genes and compare them to a control population. (PMID:20029656)
- The absence of pathogenic mutations in COL4A4 gene in our large number of unrelated keratoconus patients indicates that other genetic factors are involved in the development of this disorder (PMID:20664914)
- Our findings suggest that variants in the COL4A4 gene may contribute to the development of lattice degeneration of the retina. (PMID:22723992)
- The expression of collagen type IV and its alpha chains (alpha1-6) was investigated in different endothelial cell culture systems in vitro qualitatively and quantitatively. (PMID:23551189)
- 9 mutation in COL4A4 associated with autosomal dominant Alport syndrome. (PMID:24033287)
- Twenty mutation pairs (50%) affected COL4A3 and 20 pairs affected COL4A4 in Alport syndrome. (PMID:24052634)
- COL4A4 related nephropathy caused by novel mutation in a large consanguineous Saudi family. (PMID:24398087)
- We could hypothesize that mutations in COL4A3 and COL4A4 genes are not involved in keratoconus risk in Greek population. (PMID:25083577)
- We found that 7 out of 70 families (10%) with familial focal segmental glomerulosclerosis in our cohort have rare variants in COL4A3 and COL4A4. (PMID:25229338)
- New COL4A4 mutations among Portuguese patients with collagen IV-related nephropathies were identified in 8 unrelated families. (PMID:25307543)
- COL4A4 missense variants [c.G2636A (p.Gly879Glu) and c.C4715T (p.Pro1572Leu)] in family 1. COL4A4 c.G2636A, a novel variant, co-segregated with renal disease among maternal relatives. (PMID:25381091)
- we identified seven families with associated mutations in COL4A3 and COL4A4 genes and four families with associated mutations in COL4A4 and COL4A5. We did not find kindreds with digenic inheritance attributable to mutations in COL4A3 and COL4A5 (PMID:25575550)
- COL4A4 rs2229813 AA and GA+AA genotypes as well as the A allele play roles as risk factors for developing Keratoconus in our population. (PMID:25651396)
- Tetrastatin, the NC1 alpha 4 collagen IV domain level increases in pulmonary tumor extracts. (PMID:25935259)
- we describe a novel splicing mutation in COL4A4 that results in TBMN. This analysis increases our understanding of TBMN phenotype-genotype correlations, which should facilitate more accurate diagnosis and prenatal diagnosis of TBMN. (PMID:26833262)
- These findings indicate that the heterozygous mutations in COL4A3 or COL4A4 may cause ESRD on their own, although secondary factors, such as environmental factors or unknown genetic changes, might also contribute to the phenotype of kidney disease in patients with ADAS. (PMID:27281700)
- This finding broadens mutation spectrum of the COL4A4 gene and extends the phenotypic spectrum of collagen IV nephropathies. (PMID:27469977)
- Alport syndrome is the result of mutations in any of three type IV collagen genes, COL4A3, COL4A4, or COL4A5. Because the three collagen chains form heterotrimers, there is an absence of all three proteins in the basement membranes where they are expressed. (Review) (PMID:27576055)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | col4a4 | ENSDARG00000002831 |
| mus_musculus | Col4a4 | ENSMUSG00000067158 |
| rattus_norvegicus | Col4a4 | ENSRNOG00000014851 |
| drosophila_melanogaster | vkg | FBGN0016075 |
| caenorhabditis_elegans | WBGENE00001263 |
Paralogs (37): COL9A2 (ENSG00000049089), COL23A1 (ENSG00000050767), COL11A1 (ENSG00000060718), COL17A1 (ENSG00000065618), COL5A3 (ENSG00000080573), COL16A1 (ENSG00000084636), COL9A3 (ENSG00000092758), COL20A1 (ENSG00000101203), COL1A1 (ENSG00000108821), COL9A1 (ENSG00000112280), COL7A1 (ENSG00000114270), COL21A1 (ENSG00000124749), COL5A1 (ENSG00000130635), COL4A2 (ENSG00000134871), COL2A1 (ENSG00000139219), COL6A1 (ENSG00000142156), COL6A2 (ENSG00000142173), EDA (ENSG00000158813), COL26A1 (ENSG00000160963), COL1A2 (ENSG00000164692), COL3A1 (ENSG00000168542), COL4A3 (ENSG00000169031), COL22A1 (ENSG00000169436), COL24A1 (ENSG00000171502), COL18A1 (ENSG00000182871), EMID1 (ENSG00000186998), COL4A1 (ENSG00000187498), COL4A5 (ENSG00000188153), COL25A1 (ENSG00000188517), COL27A1 (ENSG00000196739), COL13A1 (ENSG00000197467), COL4A6 (ENSG00000197565), COL11A2 (ENSG00000204248), COL5A2 (ENSG00000204262), COL15A1 (ENSG00000204291), COLQ (ENSG00000206561), COL28A1 (ENSG00000215018)
Protein
Protein identifiers
Collagen alpha-4(IV) chain — P53420 (reviewed: P53420)
All UniProt accessions (5): P53420, A0A2R8Y548, A0A804HI71, A0A804HI86, A0A804HLF6
UniProt curated annotations — full annotation on UniProt →
Function. Type IV collagen is the major structural component of glomerular basement membranes (GBM), forming a ‘chicken-wire’ meshwork together with laminins, proteoglycans and entactin/nidogen.
Subunit / interactions. There are six type IV collagen isoforms, alpha 1(IV)-alpha 6(IV), each of which can form a triple helix structure with 2 other chains to generate type IV collagen network. The alpha 3(IV) chain forms a triple helical protomer with alpha 4(IV) and alpha 5(IV); this triple helical structure dimerizes through NC1-NC1 domain interactions such that the alpha 3(IV), alpha 4(IV) and alpha 5(IV) chains of one protomer connect with the alpha 5(IV), alpha 4(IV) and alpha 3(IV) chains of the opposite protomer, respectively. Associates with LAMB2 at the neuromuscular junction and in GBM.
Subcellular location. Secreted. Extracellular space. Extracellular matrix. Basement membrane.
Tissue specificity. Expressed in Bruch’s membrane, outer plexiform layer, inner nuclear layer, inner plexiform layer, ganglion cell layer, inner limiting membrane and around the blood vessels of the retina (at protein level). Alpha 3 and alpha 4 type IV collagens are colocalized and present in kidney, eye, basement membranes of lens capsule, cochlea, lung, skeletal muscle, aorta, synaptic fibers, fetal kidney and fetal lung. PubMed:8083201 reports similar levels of expression of alpha 3 and alpha 4 type IV collagens in kidney, but PubMed:7523402 reports that in kidney levels of alpha 3 type IV collagen are significantly lower than those of alpha 4 type IV collagen. Highest levels of expression of alpha 4 type IV collagen are detected in kidney, calvaria, neuroretina and cardiac muscle. Lower levels of expression are observed in brain, lung and thymus, and no expression is detected in choroid plexus, liver, adrenal, pancreas, ileum or skin.
Post-translational modifications. Prolines at the third position of the tripeptide repeating unit (G-X-Y) are hydroxylated in some or all of the chains. Type IV collagens contain numerous cysteine residues which are involved in inter- and intramolecular disulfide bonding. 12 of these, located in the NC1 domain, are conserved in all known type IV collagens. The trimeric structure of the NC1 domains is stabilized by covalent bonds between Lys and Met residues.
Disease relevance. Alport syndrome 2, autosomal recessive (ATS2) [MIM:203780] A syndrome characterized by progressive glomerulonephritis, glomerular basement membrane defects, renal failure, sensorineural deafness and specific eye abnormalities (lenticonous and macular flecks). The disorder shows considerable heterogeneity in that families differ in the age of end-stage renal disease and the occurrence of deafness. The disease is caused by variants affecting the gene represented in this entry. Hematuria, benign familial, 1 (BFH1) [MIM:141200] An autosomal dominant condition characterized by non-progressive isolated microscopic hematuria that does not result in renal failure. It is characterized pathologically by thinning of the glomerular basement membrane. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. Alpha chains of type IV collagen have a non-collagenous domain (NC1) at their C-terminus, frequent interruptions of the G-X-Y repeats in the long central triple-helical domain (which may cause flexibility in the triple helix), and a short N-terminal triple-helical 7S domain.
Similarity. Belongs to the type IV collagen family.
RefSeq proteins (1): NP_000083* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001442 | Collagen_IV_NC | Domain |
| IPR008160 | Collagen | Repeat |
| IPR016187 | CTDL_fold | Homologous_superfamily |
| IPR036954 | Collagen_IV_NC_sf | Homologous_superfamily |
| IPR050149 | Collagen_superfamily | Family |
Pfam: PF01391, PF01413
UniProt features (97 total): compositionally biased region 21, sequence variant 21, strand 18, short sequence motif 8, region of interest 7, disulfide bond 6, helix 6, glycosylation site 2, sequence conflict 2, turn 2, signal peptide 1, chain 1, domain 1, site 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6WKU | X-RAY DIFFRACTION | 1.76 |
| 5NB1 | X-RAY DIFFRACTION | 2.82 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P53420-F1 | 49.03 | 0.08 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 1206–1207 (cleavage; by collagenase)
Disulfide bonds (6): 1480–1569, 1513–1566, 1525–1531, 1588–1686, 1622–1683, 1634–1641
Glycosylation sites (2): 142, 669
Function
Pathways and Gene Ontology
Reactome pathways
14 pathways
| ID | Pathway |
|---|---|
| R-HSA-1442490 | Collagen degradation |
| R-HSA-1566977 | Fibronectin matrix formation |
| R-HSA-1650814 | Collagen biosynthesis and modifying enzymes |
| R-HSA-186797 | Signaling by PDGF |
| R-HSA-2022090 | Assembly of collagen fibrils and other multimeric structures |
| R-HSA-216083 | Integrin cell surface interactions |
| R-HSA-2214320 | Anchoring fibril formation |
| R-HSA-2243919 | Crosslinking of collagen fibrils |
| R-HSA-3000157 | Laminin interactions |
| R-HSA-3000171 | Non-integrin membrane-ECM interactions |
| R-HSA-3000178 | ECM proteoglycans |
| R-HSA-419037 | NCAM1 interactions |
| R-HSA-8948216 | Collagen chain trimerization |
| R-HSA-9638630 | Attachment of bacteria to epithelial cells |
MSigDB gene sets: 251 (showing top):
GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_DN, TGGTGCT_MIR29A_MIR29B_MIR29C, MYOGENIN_Q6, GOBP_COLLAGEN_FIBRIL_ORGANIZATION, MODULE_571, FISCHER_G1_S_CELL_CYCLE, GOCC_COLLAGEN_TRIMER, GCANCTGNY_MYOD_Q6, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, REACTOME_NCAM_SIGNALING_FOR_NEURITE_OUT_GROWTH, RIZKI_TUMOR_INVASIVENESS_3D_DN, LHX3_01, TTGGGAG_MIR150, SENESE_HDAC1_AND_HDAC2_TARGETS_DN, CEBP_Q2
GO Biological Process (2): collagen fibril organization (GO:0030199), glomerular basement membrane development (GO:0032836)
GO Molecular Function (3): extracellular matrix structural constituent (GO:0005201), extracellular matrix structural constituent conferring tensile strength (GO:0030020), molecular adaptor activity (GO:0060090)
GO Cellular Component (6): extracellular region (GO:0005576), collagen type IV trimer (GO:0005587), basement membrane (GO:0005604), endoplasmic reticulum lumen (GO:0005788), extracellular matrix (GO:0031012), collagen trimer (GO:0005581)
Reactome top-level categories
Rollup of top-8 pathways:
| Category | Pathways |
|---|---|
| Extracellular matrix organization | 5 |
| Collagen formation | 2 |
| Assembly of collagen fibrils and other multimeric structures | 2 |
| Degradation of the extracellular matrix | 1 |
| Signaling by Receptor Tyrosine Kinases | 1 |
| NCAM signaling for neurite out-growth | 1 |
| Collagen biosynthesis and modifying enzymes | 1 |
| Biofilm formation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| extracellular matrix organization | 2 |
| extracellular matrix | 2 |
| glomerulus development | 1 |
| anatomical structure development | 1 |
| structural molecule activity | 1 |
| extracellular matrix structural constituent | 1 |
| molecular_function | 1 |
| binding | 1 |
| cellular anatomical structure | 1 |
| network-forming collagen trimer | 1 |
| chicken-wire-like collagen network | 1 |
| endoplasmic reticulum | 1 |
| intracellular organelle lumen | 1 |
| external encapsulating structure | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
1224 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| COL4A4 | IGBP1 | P78318 | 858 |
| COL4A4 | NPHS1 | O60500 | 768 |
| COL4A4 | NPHS2 | Q9NP85 | 763 |
| COL4A4 | LMX1B | O60663 | 704 |
| COL4A4 | MYH9 | P35579 | 664 |
| COL4A4 | CD151 | P48509 | 604 |
| COL4A4 | NID1 | P14543 | 588 |
| COL4A4 | COL4A3 | Q01955 | 535 |
| COL4A4 | RHBDD1 | Q8TEB9 | 526 |
| COL4A4 | VSX1 | Q9NZR4 | 507 |
| COL4A4 | INF2 | Q27J81 | 476 |
| COL4A4 | LMX1A | Q8TE12 | 470 |
| COL4A4 | NKX2-2 | O95096 | 470 |
| COL4A4 | COL4A5 | P29400 | 469 |
| COL4A4 | LHX1 | P48742 | 444 |
IntAct
10 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| KLK6 | COL4A4 | psi-mi:“MI:0570”(protein cleavage) | 0.440 |
| COL4A4 | HNRNPM | psi-mi:“MI:0915”(physical association) | 0.400 |
| Mecom | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| FGD6 | COL4A4 | psi-mi:“MI:0914”(association) | 0.350 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| LAIR2 | PLOD3 | psi-mi:“MI:0914”(association) | 0.350 |
| LAIR2 | AGRN | psi-mi:“MI:0914”(association) | 0.350 |
| PLOD1 | PLOD2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (9): COL4A4 (Protein-RNA), COL4A4 (Proximity Label-MS), COL4A4 (Affinity Capture-MS), COL4A4 (Affinity Capture-MS), COL4A4 (Affinity Capture-MS), COL4A4 (Proximity Label-MS), COL4A4 (Affinity Capture-MS), ACAA2 (Cross-Linking-MS (XL-MS)), COL4A4 (Affinity Capture-MS)
ESM2 similar proteins: A0A060WQA3, A0MSJ1, A5PN28, A6NHN0, A8WR59, C0HLN2, C7DZK3, O35167, O35348, O76368, O88207, P08122, P08572, P12106, P12107, P12108, P13942, P20849, P20850, P20908, P20909, P25067, P25940, P53420, P83371, P98085, Q01955, Q03637, Q05722, Q07092, Q07643, Q0VF58, Q14031, Q14055, Q14993, Q17RW2, Q28083, Q30D77, Q32S24, Q4ZJM7
Diamond homologs: P02462, P02463, P08120, P08122, P08572, P17139, P17140, P27393, P29400, P53420, P55787, Q01955, Q14031, Q28084, Q28247, Q29442, Q7SIB2, Q7SIB3, Q9QZR9, Q9QZS0
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| COL4A4 | “up-regulates activity” | “A2/b1 integrin” | binding |
| COL4A4 | up-regulates | ECM_synthesis | |
| PXDN | “up-regulates quantity by stabilization” | COL4A4 | “catalytic activity” |
| COL4A4 | “up-regulates activity” | “A1/b1 integrin” | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
3774 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 257 |
| Likely pathogenic | 517 |
| Uncertain significance | 966 |
| Likely benign | 1369 |
| Benign | 183 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1036012 | NM_000092.5(COL4A4):c.870G>A (p.Lys290=) | Pathogenic |
| 1068523 | NM_000092.5(COL4A4):c.118G>T (p.Gly40Ter) | Pathogenic |
| 1069400 | NM_000092.5(COL4A4):c.3319_3358del (p.Leu1107fs) | Pathogenic |
| 1070032 | NM_000092.5(COL4A4):c.1768G>T (p.Gly590Ter) | Pathogenic |
| 1070585 | NM_000092.5(COL4A4):c.4200dup (p.Gly1401fs) | Pathogenic |
| 1070939 | NM_000092.5(COL4A4):c.2219_2220del (p.Pro740fs) | Pathogenic |
| 1070978 | NM_000092.5(COL4A4):c.2906C>A (p.Ser969Ter) | Pathogenic |
| 1071074 | NM_000092.5(COL4A4):c.1696+1del | Pathogenic |
| 1073049 | NM_000092.5(COL4A4):c.4962_4969dup (p.Ala1657delinsGlyTer) | Pathogenic |
| 1073470 | NM_000092.5(COL4A4):c.4444del (p.Leu1482fs) | Pathogenic |
| 1073781 | NM_000092.5(COL4A4):c.4449_4450dup (p.Met1484fs) | Pathogenic |
| 1073782 | NM_000092.5(COL4A4):c.2842G>T (p.Gly948Ter) | Pathogenic |
| 1073919 | NM_000092.5(COL4A4):c.156C>A (p.Cys52Ter) | Pathogenic |
| 1075869 | NM_000092.5(COL4A4):c.1862del (p.Pro621fs) | Pathogenic |
| 1076015 | NM_000092.5(COL4A4):c.794_804del (p.Asp264_Phe265insTer) | Pathogenic |
| 1284919 | NM_000092.5(COL4A4):c.2833G>T (p.Gly945Ter) | Pathogenic |
| 1298378 | NM_000092.5(COL4A4):c.2860+2T>G | Pathogenic |
| 1342006 | NM_000092.5(COL4A4):c.4720C>T (p.Gln1574Ter) | Pathogenic |
| 1344700 | NM_000092.5(COL4A4):c.2383G>A (p.Gly795Arg) | Pathogenic |
| 1344701 | NM_000092.5(COL4A4):c.4503dup (p.Ala1502fs) | Pathogenic |
| 1344702 | NM_000092.5(COL4A4):c.1697-1G>C | Pathogenic |
| 1350377 | NM_000092.5(COL4A4):c.4787G>A (p.Trp1596Ter) | Pathogenic |
| 1356715 | NM_000092.5(COL4A4):c.4849_4850del (p.Met1617fs) | Pathogenic |
| 1359803 | NM_000092.5(COL4A4):c.2531_2537del (p.Tyr844fs) | Pathogenic |
| 1366631 | NC_000002.11:g.(?227872031)(227985874_?)del | Pathogenic |
| 1374552 | NM_000092.5(COL4A4):c.4473_4474dup (p.Ser1492fs) | Pathogenic |
| 1382507 | NM_000092.5(COL4A4):c.2196del (p.Phe732fs) | Pathogenic |
| 1385943 | NM_000092.5(COL4A4):c.1143_1144del (p.Asp383fs) | Pathogenic |
| 1386713 | NM_000092.5(COL4A4):c.1247del (p.Pro416fs) | Pathogenic |
| 1399009 | NM_000092.5(COL4A4):c.105T>G (p.Tyr35Ter) | Pathogenic |
SpliceAI
6201 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:227010273:A:AC | donor_gain | 1.0000 |
| 2:227010274:C:CC | donor_gain | 1.0000 |
| 2:227025861:G:C | acceptor_gain | 1.0000 |
| 2:227025880:T:C | acceptor_gain | 1.0000 |
| 2:227027896:GCTCA:G | donor_loss | 1.0000 |
| 2:227027897:CTCAC:C | donor_loss | 1.0000 |
| 2:227027898:TCACC:T | donor_loss | 1.0000 |
| 2:227027899:CACCC:C | donor_loss | 1.0000 |
| 2:227027900:A:AC | donor_gain | 1.0000 |
| 2:227027900:AC:A | donor_gain | 1.0000 |
| 2:227027900:ACCCG:A | donor_loss | 1.0000 |
| 2:227027901:C:A | donor_loss | 1.0000 |
| 2:227027901:C:CC | donor_gain | 1.0000 |
| 2:227027901:CC:C | donor_gain | 1.0000 |
| 2:227027927:C:CA | donor_gain | 1.0000 |
| 2:227028009:CCT:C | acceptor_gain | 1.0000 |
| 2:227028010:C:CC | acceptor_gain | 1.0000 |
| 2:227028011:T:C | acceptor_gain | 1.0000 |
| 2:227028011:T:TC | acceptor_gain | 1.0000 |
| 2:227030438:CATA:C | donor_loss | 1.0000 |
| 2:227030441:A:AC | donor_gain | 1.0000 |
| 2:227030441:A:C | donor_loss | 1.0000 |
| 2:227030442:C:CC | donor_gain | 1.0000 |
| 2:227030442:C:CT | donor_loss | 1.0000 |
| 2:227030442:CCTTT:C | donor_gain | 1.0000 |
| 2:227030468:T:TA | donor_gain | 1.0000 |
| 2:227030594:TGCTC:T | acceptor_gain | 1.0000 |
| 2:227030596:CTC:C | acceptor_gain | 1.0000 |
| 2:227030598:CCT:C | acceptor_loss | 1.0000 |
| 2:227030599:C:CC | acceptor_gain | 1.0000 |
AlphaMissense
10580 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:227010359:A:C | S1492R | 0.998 |
| 2:227010359:A:T | S1492R | 0.998 |
| 2:227010361:T:G | S1492R | 0.998 |
| 2:227007535:G:C | S1621R | 0.997 |
| 2:227007535:G:T | S1621R | 0.997 |
| 2:227007537:T:G | S1621R | 0.997 |
| 2:227008135:G:C | S1564R | 0.997 |
| 2:227008135:G:T | S1564R | 0.997 |
| 2:227008137:T:G | S1564R | 0.997 |
| 2:227007350:C:G | C1683S | 0.996 |
| 2:227007351:A:T | C1683S | 0.996 |
| 2:227007532:G:C | C1622W | 0.996 |
| 2:227007497:C:G | C1634S | 0.995 |
| 2:227007498:A:T | C1634S | 0.995 |
| 2:227007445:C:A | W1651C | 0.994 |
| 2:227007445:C:G | W1651C | 0.994 |
| 2:227007533:C:G | C1622S | 0.994 |
| 2:227007533:C:T | C1622Y | 0.994 |
| 2:227007534:A:T | C1622S | 0.994 |
| 2:227008130:C:G | C1566S | 0.994 |
| 2:227008131:A:T | C1566S | 0.994 |
| 2:227008201:C:A | W1542C | 0.994 |
| 2:227008201:C:G | W1542C | 0.994 |
| 2:227008288:G:C | C1513W | 0.994 |
| 2:227007349:G:C | C1683W | 0.993 |
| 2:227007351:A:G | C1683R | 0.993 |
| 2:227007443:A:G | L1652P | 0.993 |
| 2:227007447:A:G | W1651R | 0.993 |
| 2:227007447:A:T | W1651R | 0.993 |
| 2:227007534:A:G | C1622R | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000026260 (2:227065328 G>C), RS1000029305 (2:227038752 A>G), RS1000038316 (2:227071486 G>A,C), RS1000058225 (2:227155486 G>C), RS1000067030 (2:226981305 T>G), RS1000088961 (2:227154972 T>C), RS1000093117 (2:227056206 T>C), RS1000094354 (2:227112850 T>G), RS1000106924 (2:227030004 T>C), RS1000109668 (2:227117803 A>C,G), RS1000121696 (2:226988117 A>T), RS1000123870 (2:227126177 A>G), RS1000137686 (2:227142600 CA>C,CAA), RS1000139419 (2:227030413 A>G,T), RS1000176849 (2:227055925 A>G)
Disease associations
OMIM: gene MIM:120131 | disease phenotypes: MIM:141200, MIM:203780, MIM:301050, MIM:104200, MIM:156000, MIM:173900, MIM:614483, MIM:160700, MIM:276900, MIM:615432
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal recessive Alport syndrome | Definitive | Autosomal recessive |
| Alport syndrome | Definitive | Semidominant |
| hematuria, benign familial, 1 | Strong | Autosomal dominant |
| autosomal dominant Alport syndrome | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Alport syndrome | Definitive | SD |
Mondo (24): hematuria, benign familial, 1 (MONDO:0007709), autosomal recessive Alport syndrome (MONDO:0008762), Alport syndrome (MONDO:0018965), hematuria, benign familial (MONDO:0957317), autosomal dominant Alport syndrome (MONDO:0007086), Meniere disease (MONDO:0007972), hearing loss disorder (MONDO:0005365), kidney disorder (MONDO:0005240), focal segmental glomerulosclerosis (MONDO:0100313), polycystic kidney disease (MONDO:0020642), X-linked Alport syndrome (MONDO:0010520), brain small vessel disease 2A, autosomal dominant (MONDO:0013773), myopia (MONDO:0001384), proteinuria (MONDO:0003634), hypertensive disorder (MONDO:0005044)
Orphanet (10): Alport syndrome (Orphanet:63), Autosomal recessive Alport syndrome (Orphanet:88919), Autosomal dominant Alport syndrome (Orphanet:88918), X-linked Alport syndrome (Orphanet:88917), Porencephaly (Orphanet:2940), Familial porencephaly (Orphanet:99810), Usher syndrome (Orphanet:886), Atypical hemolytic uremic syndrome (Orphanet:2134), NON RARE IN EUROPE: Benign familial hematuria (Orphanet:97562), NON RARE IN EUROPE: Menière disease (Orphanet:45360)
HPO phenotypes
30 total (30 of 30 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000083 | Renal insufficiency |
| HP:0000093 | Proteinuria |
| HP:0000100 | Nephrotic syndrome |
| HP:0000123 | Nephritis |
| HP:0000365 | Hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000518 | Cataract |
| HP:0000519 | Developmental cataract |
| HP:0000545 | Myopia |
| HP:0000790 | Hematuria |
| HP:0000822 | Hypertension |
| HP:0000829 | Hypoparathyroidism |
| HP:0001142 | Lenticonus |
| HP:0001417 | X-linked inheritance |
| HP:0001423 | X-linked dominant inheritance |
| HP:0001873 | Thrombocytopenia |
| HP:0002907 | Microscopic hematuria |
| HP:0003676 | Progressive |
| HP:0003680 | Nonprogressive |
| HP:0003774 | Stage 5 chronic kidney disease |
| HP:0004722 | Thickened glomerular basement membrane |
| HP:0006756 | Diffuse leiomyomatosis |
| HP:0008064 | Ichthyosis |
| HP:0011501 | Anterior lenticonus |
| HP:0012577 | Thin glomerular basement membrane |
| HP:0030034 | Glomerular basement membrane lamellation |
| HP:0200020 | Corneal erosion |
| HP:6001026 | Reduced epidermal collagen IV alpha 5 chain staining |
GWAS associations
13 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001538_19 | Immune reponse to smallpox (secreted IFN-alpha) | 3.000000e-09 |
| GCST002783_270 | Body mass index | 5.000000e-06 |
| GCST002783_625 | Body mass index | 6.000000e-06 |
| GCST004208_2 | Body mass index | 4.000000e-08 |
| GCST005196_217 | Coronary artery disease | 7.000000e-06 |
| GCST006463_6 | Urinary albumin excretion (no hypertensive medication) | 2.000000e-08 |
| GCST006586_22 | Urinary albumin excretion | 5.000000e-09 |
| GCST006976_39 | Macular thickness | 2.000000e-16 |
| GCST007267_82 | Systolic blood pressure | 5.000000e-10 |
| GCST008362_206 | Birth weight | 2.000000e-12 |
| GCST008790_14 | Urinary albumin-to-creatinine ratio | 9.000000e-11 |
| GCST008794_27 | Urinary albumin-to-creatinine ratio | 2.000000e-11 |
| GCST009640_39 | Urinary albumin-to-creatinine ratio | 3.000000e-11 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004645 | response to vaccine |
| EFO:0004873 | cytokine measurement |
| EFO:0004340 | body mass index |
| EFO:0004285 | albuminuria |
| EFO:0006335 | systolic blood pressure |
| EFO:0004344 | birth weight |
| EFO:0007778 | urinary albumin to creatinine ratio |
MeSH disease descriptors (15)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D065766 | Atypical Hemolytic Uremic Syndrome | C12.050.351.968.419.936.463.500; C12.200.777.419.936.463.500; C12.950.419.936.463.500; C15.378.050.141.610.500; C15.378.140.855.925.500.500; C15.378.243.937.925.500.500 |
| D005921 | Glomerulonephritis | C12.050.351.968.419.570.363; C12.200.777.419.570.363; C12.950.419.570.363 |
| D005923 | Glomerulosclerosis, Focal Segmental | C12.050.351.968.419.570.363.640; C12.200.777.419.570.363.660; C12.950.419.570.363.640 |
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| D006973 | Hypertension | C14.907.489 |
| D007674 | Kidney Diseases | C12.050.351.968.419; C12.200.777.419; C12.950.419 |
| D007676 | Kidney Failure, Chronic | C12.050.351.968.419.780.750.500; C12.200.777.419.780.750.500; C12.950.419.780.750.500; C23.550.291.500.906.500 |
| D008575 | Meniere Disease | C09.218.568.217.500 |
| D009216 | Myopia | C11.744.636 |
| D009404 | Nephrotic Syndrome | C12.050.351.968.419.630.643; C12.200.777.419.630.643; C12.950.419.630.643 |
| D007690 | Polycystic Kidney Diseases | C12.050.351.968.419.403.875; C12.200.777.419.403.875; C12.950.419.403.875; C16.131.077.717; C16.320.184.625 |
| D011507 | Proteinuria | C12.050.351.968.934.734; C12.200.777.934.734; C12.950.934.734; C23.888.942.750 |
| D013921 | Thrombocytopenia | C15.378.140.855; C15.378.243.937 |
| D052245 | Usher Syndromes | C09.218.458.341.186.500.500; C09.218.458.341.887.886; C10.597.751.418.341.186.500.500; C10.597.751.418.341.887.886; C10.597.751.941.162.625.500; C11.768.585.658.500.813; C11.966.075.375.500; C16.131.077.299.500; C16.320.290.684.500; C23.888.592.763.393.341.887.886 |
| C562476 | Hematuria, Benign Familial (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2364188 (PROTEIN COMPLEX GROUP), CHEMBL3988505 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
33 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Vorinostat | affects cotreatment, increases expression | 2 |
| Doxorubicin | decreases expression, increases expression | 2 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases methylation | 1 |
| trichostatin A | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| evodiamine | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| Irinotecan | decreases expression | 1 |
| Resveratrol | decreases expression, affects cotreatment | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Chelating Agents | affects binding, increases expression | 1 |
| Copper | affects binding, increases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | decreases expression | 1 |
| Methotrexate | increases expression | 1 |
| Nickel | increases expression | 1 |
| Phenobarbital | decreases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Tetrachlorodibenzodioxin | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Triclosan | increases expression | 1 |
| Valproic Acid | increases expression | 1 |
| Vitallium | increases expression | 1 |
| 8-Bromo Cyclic Adenosine Monophosphate | decreases expression | 1 |
Cellosaurus cell lines
7 cell lines: 5 induced pluripotent stem cell, 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1NX | Abcam HeLa COL4A4 KO | Cancer cell line | Female |
| CVCL_B5IV | NCKDi005-A | Induced pluripotent stem cell | Male |
| CVCL_E0AM | Ubigene HeLa COL4A4 KO | Cancer cell line | Female |
| CVCL_IX43 | HPSI0416i-sevr_1 | Induced pluripotent stem cell | Female |
| CVCL_IX44 | HPSI0416i-sevr_2 | Induced pluripotent stem cell | Female |
| CVCL_LF15 | HPSI0516i-yist_1 | Induced pluripotent stem cell | Male |
| CVCL_LF16 | HPSI0516i-yist_3 | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05655728 | PHASE4 | UNKNOWN | Treatment With Metformin in Chinese Children With Alport Syndrome |
| NCT06499948 | PHASE4 | ACTIVE_NOT_RECRUITING | Albuminuria Lowering Effect of Dapagliflozin, Spironolactone and Their Combination in Adult Patients With Alport Syndrome (COMBINE-ALPORT) |
| NCT01574313 | PHASE4 | COMPLETED | Effect of Stellate Ganglion Block on Meniere’s Disease |
| NCT02529475 | PHASE4 | TERMINATED | Evaluation of Inner Ear and Brain Structures With Contrast-enhanced MRI in Healthy Subjects (HYDROPS) |
| NCT04815187 | PHASE4 | ACTIVE_NOT_RECRUITING | Repurposed Use of Allergic Rhinitis and Allergic Asthma Drug to Reduce Vertigo and Hearing Loss in Meniere’s Disease |
| NCT00205881 | PHASE4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | PHASE4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | PHASE4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | PHASE4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | PHASE4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT03749447 | PHASE3 | TERMINATED | An Extended Access Program for Bardoxolone Methyl in Patients With CKD (EAGLE) |
| NCT03664674 | PHASE3 | COMPLETED | Phase 3 Study of OTO-104 in Subjects With Unilateral Meniere’s Disease |
| NCT04677972 | PHASE3 | COMPLETED | SPI-1005 for the Treatment of Meniere’s Disease |
| NCT05851508 | PHASE3 | RECRUITING | The Effecttiveness of Intratympanic Methylprednisolon Injections Compared to Placebo in the Treatment of Vertigo Attacks in Meniere’s Disease |
| NCT01499901 | PHASE3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | PHASE3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | PHASE3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | PHASE3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT07523581 | PHASE2 | NOT_YET_RECRUITING | EXACT Study: A Blinded Study in Patients With Alport Syndrome to Evaluate Exaluren Efficacy and Safety |
| NCT00309257 | PHASE2 | COMPLETED | Effects of an Intensified Treatment With ACE-I,ATA II and Statins in Alport Syndrome |
| NCT02855268 | PHASE2 | TERMINATED | Study of Lademirsen (SAR339375) in Patients With Alport Syndrome |
| NCT04573920 | PHASE2 | ACTIVE_NOT_RECRUITING | Atrasentan in Patients With Proteinuric Glomerular Diseases |
| NCT05003986 | PHASE2 | RECRUITING | Study of Sparsentan Treatment in Pediatrics With Proteinuric Glomerular Diseases |
| NCT05267262 | PHASE2 | COMPLETED | Study to Evaluate R3R01 in Patients With Alport Syndrome and Patients With Focal Segmental Glomerulosclerosis |
| NCT05448755 | PHASE2 | COMPLETED | A Study of ELX-02 in Patients With Alport Syndrome |
| NCT06425055 | PHASE2 | COMPLETED | Vonafexor ALPort Syndrome Efficacy & Safety TRIAl-1 (ALPESTRIA-1) |
| NCT07211685 | PHASE2 | RECRUITING | BAY3401016; Biomarker Study Alport |
| NCT05420350 | PHASE2 | UNKNOWN | Lamotrigine and Bupropion for Meniere’s Disease |
| NCT06544434 | PHASE2 | RECRUITING | Laser Acupuncture for Meniere Disease |
| NCT00013455 | PHASE2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | PHASE2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
| NCT00552786 | PHASE2 | COMPLETED | Antioxidation Medication for Noise-induced Hearing Loss |
| NCT00802425 | PHASE2 | COMPLETED | Efficacy of AM-111 in Patients With Acute Sensorineural Hearing Loss |
| NCT01139281 | PHASE2 | COMPLETED | The Protective Effect of Ginkgo Biloba Extract on Cisplatin-induced Ototoxicity in Humans |
| NCT01451853 | PHASE2 | UNKNOWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | PHASE2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
| NCT01773278 | PHASE2 | RECRUITING | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT02832128 | PHASE2 | COMPLETED | Evaluating Possible Improvement in Speech and Hearing Tests After 28 Days of Dosing of the Study Drug AUT00063 Compared to Placebo (QuicKfire) |
| NCT04915183 | PHASE2 | RECRUITING | Atorvastatin to Reduce Cisplatin-Induced Hearing Loss Among Individuals With Head and Neck Cancer |
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Related Atlas pages
- Associated diseases: hematuria, benign familial, 1, autosomal recessive Alport syndrome, Alport syndrome, autosomal dominant Alport syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Alport syndrome, atypical hemolytic-uremic syndrome, autosomal dominant Alport syndrome, autosomal recessive Alport syndrome, brain small vessel disease 2A, autosomal dominant, end stage renal failure, focal segmental glomerulosclerosis, glomerulonephritis, hematuria, benign familial, hematuria, benign familial, 1, kidney disorder, Meniere disease, myopia, nephrotic syndrome, polycystic kidney disease, proteinuria, specific language impairment 5, steroid-resistant nephrotic syndrome, thrombocytopenia, Usher syndrome, X-linked Alport syndrome