COL6A1
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Summary
COL6A1 (collagen type VI alpha 1 chain, HGNC:2211) is a protein-coding gene on chromosome 21q22.3, encoding Collagen alpha-1(VI) chain (P12109). Collagen VI acts as a cell-binding protein.
The collagens are a superfamily of proteins that play a role in maintaining the integrity of various tissues. Collagens are extracellular matrix proteins and have a triple-helical domain as their common structural element. Collagen VI is a major structural component of microfibrils. The basic structural unit of collagen VI is a heterotrimer of the alpha1(VI), alpha2(VI), and alpha3(VI) chains. The alpha2(VI) and alpha3(VI) chains are encoded by the COL6A2 and COL6A3 genes, respectively. The protein encoded by this gene is the alpha 1 subunit of type VI collagen (alpha1(VI) chain). Mutations in the genes that code for the collagen VI subunits result in the autosomal dominant disorder, Bethlem myopathy.
Source: NCBI Gene 1291 — RefSeq curated summary.
At a glance
- Gene–disease (curated): collagen 6-related myopathy (Definitive, ClinGen) — +4 more curated relationships
- GWAS associations: 24
- Clinical variants (ClinVar): 2,136 total — 110 pathogenic, 59 likely-pathogenic
- Phenotypes (HPO): 119
- Druggable target: yes
- MANE Select transcript:
NM_001848
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2211 |
| Approved symbol | COL6A1 |
| Name | collagen type VI alpha 1 chain |
| Location | 21q22.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000142156 |
| Ensembl biotype | protein_coding |
| OMIM | 120220 |
| Entrez | 1291 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 5 retained_intron, 4 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000361866, ENST00000463060, ENST00000466285, ENST00000486023, ENST00000492851, ENST00000498614, ENST00000612273, ENST00000682634, ENST00000683550, ENST00000866134
RefSeq mRNA: 1 — MANE Select: NM_001848
NM_001848
CCDS: CCDS13727
Canonical transcript exons
ENST00000361866 — 35 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000952543 | 45982634 | 45982763 |
| ENSE00001436541 | 45981770 | 45981947 |
| ENSE00002430903 | 45986944 | 45987072 |
| ENSE00002442314 | 45989608 | 45989652 |
| ENSE00002444369 | 45987155 | 45987175 |
| ENSE00002446605 | 45990258 | 45990284 |
| ENSE00002449732 | 45992748 | 45992810 |
| ENSE00002450819 | 45990979 | 45991041 |
| ENSE00002457874 | 45987499 | 45987519 |
| ENSE00002459279 | 45997421 | 45997483 |
| ENSE00002465494 | 45997700 | 45997762 |
| ENSE00002468227 | 45986526 | 45986685 |
| ENSE00002468467 | 45992164 | 45992217 |
| ENSE00002470662 | 45994167 | 45994229 |
| ENSE00002473380 | 45989084 | 45989137 |
| ENSE00002477756 | 45990773 | 45990826 |
| ENSE00002478448 | 45998121 | 45998171 |
| ENSE00002483667 | 46000759 | 46000767 |
| ENSE00002492838 | 45990378 | 45990422 |
| ENSE00002494313 | 45992010 | 45992072 |
| ENSE00002495880 | 45999657 | 45999692 |
| ENSE00002500444 | 45992363 | 45992398 |
| ENSE00002505064 | 45998398 | 45998433 |
| ENSE00002514254 | 45989752 | 45989778 |
| ENSE00002517632 | 45987610 | 45987654 |
| ENSE00002519552 | 45999153 | 45999218 |
| ENSE00002525270 | 45998897 | 45998959 |
| ENSE00002693513 | 45984269 | 45984469 |
| ENSE00003466321 | 46000331 | 46000367 |
| ENSE00003560168 | 46002527 | 46002710 |
| ENSE00003587026 | 46002218 | 46002401 |
| ENSE00003606957 | 46003391 | 46005048 |
| ENSE00003615014 | 46003120 | 46003149 |
| ENSE00003665865 | 46001253 | 46001386 |
| ENSE00003672421 | 46001961 | 46002070 |
Expression profiles
Bgee: expression breadth ubiquitous, 291 present calls, max score 99.79.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 446.6311 / max 6679.8979, expressed in 1570 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 189593 | 446.3799 | 1570 |
| 189622 | 0.2512 | 125 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 99.79 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 99.73 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 99.70 | gold quality |
| body of uterus | UBERON:0009853 | 99.69 | gold quality |
| lower esophagus | UBERON:0013473 | 99.69 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 99.67 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 99.66 | gold quality |
| left uterine tube | UBERON:0001303 | 99.65 | gold quality |
| right ovary | UBERON:0002118 | 99.64 | gold quality |
| saphenous vein | UBERON:0007318 | 99.64 | gold quality |
| endocervix | UBERON:0000458 | 99.62 | gold quality |
| skin of hip | UBERON:0001554 | 99.62 | gold quality |
| right coronary artery | UBERON:0001625 | 99.61 | gold quality |
| left ovary | UBERON:0002119 | 99.61 | gold quality |
| myometrium | UBERON:0001296 | 99.58 | gold quality |
| cartilage tissue | UBERON:0002418 | 99.58 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.55 | gold quality |
| urethra | UBERON:0000057 | 99.51 | gold quality |
| ascending aorta | UBERON:0001496 | 99.51 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.51 | gold quality |
| periodontal ligament | UBERON:0008266 | 99.51 | gold quality |
| coronary artery | UBERON:0001621 | 99.50 | gold quality |
| left coronary artery | UBERON:0001626 | 99.49 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.47 | gold quality |
| pericardium | UBERON:0002407 | 99.47 | gold quality |
| aorta | UBERON:0000947 | 99.43 | gold quality |
| cardia of stomach | UBERON:0001162 | 99.43 | gold quality |
| pylorus | UBERON:0001166 | 99.43 | gold quality |
| upper leg skin | UBERON:0004262 | 99.41 | gold quality |
| popliteal artery | UBERON:0002250 | 99.37 | gold quality |
Single-cell (SCXA)
Detected in 36 experiment(s), a significant marker in 33.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-24 | yes | 3271.24 |
| E-MTAB-8142 | yes | 3160.02 |
| E-ANND-2 | yes | 2454.08 |
| E-MTAB-6701 | yes | 2094.85 |
| E-MTAB-9906 | yes | 1756.70 |
| E-MTAB-8322 | yes | 1587.83 |
| E-MTAB-7052 | yes | 1458.81 |
| E-MTAB-10662 | yes | 841.19 |
| E-GEOD-75688 | yes | 441.38 |
| E-MTAB-7008 | yes | 401.76 |
| E-MTAB-10287 | yes | 122.37 |
| E-HCAD-1 | yes | 99.58 |
| E-MTAB-8410 | yes | 74.46 |
| E-HCAD-11 | yes | 50.74 |
| E-HCAD-10 | yes | 46.74 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): JUN, SMAD3, SP1, SREBF1
miRNA regulators (miRDB)
45 targeting COL6A1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-5682 | 99.89 | 72.56 | 1005 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-1321 | 99.84 | 65.30 | 1811 |
| HSA-MIR-4739 | 99.84 | 65.25 | 1832 |
| HSA-MIR-4756-5P | 99.84 | 64.98 | 1809 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-3934-3P | 99.76 | 65.51 | 1351 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6779-5P | 99.70 | 65.76 | 2363 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-7106-5P | 99.53 | 67.47 | 3574 |
| HSA-MIR-6871-3P | 99.43 | 68.85 | 741 |
| HSA-MIR-4784 | 99.15 | 67.41 | 1733 |
| HSA-MIR-608 | 98.93 | 67.83 | 2013 |
| HSA-MIR-3150B-3P | 98.81 | 67.21 | 1728 |
| HSA-MIR-4656 | 98.79 | 66.22 | 1306 |
| HSA-MIR-4710 | 98.61 | 65.96 | 1048 |
| HSA-MIR-1199-5P | 98.44 | 66.51 | 829 |
| HSA-MIR-4518 | 98.12 | 66.82 | 1030 |
| HSA-MIR-218-2-3P | 98.08 | 67.21 | 601 |
| HSA-MIR-4303 | 98.01 | 68.13 | 2304 |
| HSA-MIR-4446-3P | 97.91 | 64.29 | 991 |
| HSA-MIR-3665 | 97.73 | 65.08 | 975 |
Literature-anchored findings (GeneRIF, showing 40)
- COL6 genes encoding type VI collagen (PMID:11932968)
- keratinocyte growth factor (KGF), a key stimulator of epithelial cell proliferation during wound healing, preferentially binds to collagens I, III, and VI. (PMID:11973338)
- Haplotype analysis clearly suggested linkage of Ullrich muscular dystrophy to the COL6A1/2 locus in two cases and to the COL6A3 loci in the third case. In the remaining nine patients, primary collagen VI involvement was excluded (PMID:12011280)
- Bethlem myopathy is an autosomal dominantly inherited myopathy with contractures caused by mutations in the COL6A1 gene. (PMID:12374585)
- Collagen VI deficiency might have caused electron microscopic changes of capillaries, while function of capillaries is apparently retained. (PMID:12736748)
- a de novo heterozygous deletion of the COL6A1 gene results in a severe phenotype of classical Ullrich congenital muscular dystrophy (PMID:12840783)
- linkage disequilibrium and association studies that SNPs in the collagen 6A1 gene (COL6A1) were strongly associated with Ossification of the posterior longitudinal ligament (PMID:12958705)
- The failure of collagen VI to anchor the basal lamina to the interstitium is the cause of Ullrich disease. (PMID:14981181)
- dominant mutations are common in Ullrich congenital muscular dystrophy (UCMD). (PMID:15563506)
- we report a genotype-phenotype correlation demonstrating that heterozygous glycine substitutions in the triple-helix domain of COL6A1 are dominant and responsible for a milder Ullrich scleroatonic muscular dystrophy phenotype. (PMID:16130093)
- COL6A1 could be responsible for the hyperostotic state, leading to ectopic bone formation in the spinal ligament. (PMID:16227896)
- beta ig-h3 can differentially modulate the aggregation of collagen VI with biglycan and decorin (PMID:16434404)
- Major promoter and enhancer sequences regulating COL6A1 expression are present in this bacterial artificial chromosome clone. (PMID:17334655)
- This study identified a novel homozygous COL6A1 premature termination mutation in a UCMD patient that causes nonsense-mediated mRNA decay. (PMID:17537636)
- This study demonstrates a homogeneous overexpression of the genes encoding for alpha1 and alpha2 chains for collagen type VI in nuchal skin of human trisomy 21 fetuses. (PMID:17602442)
- COL6A1 may be a common susceptibility gene for ossification of the ligamentum flavum and ossification of the posterior longitudinal ligament in Chinese Han population. (PMID:18246005)
- Study reports 10 unrelated patients with a Ullrich congenital muscular dystrophy clinical phenotype and de novo dominant negative heterozygous splice mutations in COL6A1, COL6A2 and COL6A3. (PMID:18366090)
- Immunofluorescent labeling of collagen VI in fibroblast cultures is a useful addition to current diagnostic services for Bethlem myopathy (BM). It can be used to guide molecular genetic testing in a cost-effective and time-saving manner. (PMID:18378883)
- Results found COL6A1 to be differentially expressed in human astrocytomas. (PMID:18551403)
- SNP of COL6A1 were not related to radiographic progression of ankylosing spondylitis. (PMID:18634150)
- These data indicate that collagen VI glycine mutations impair the assembly pathway in different ways and disease severity correlates with the assembly abnormality. (PMID:18825676)
- Four patients affected by Ullrich congenital muscular dystrophy and carrying unusual mutations of COL6 genes affecting RNA splicing, were identified. (PMID:19309692)
- This study revealed several genotype-phenotype correlations, providing new insights into the natural history and course of ColVI myopathies. (PMID:20976770)
- the accumulation of abnormal mitochondria and sarcoplasmic reticulum is caused by a defect of autophagy and that restoration of a proper autophagic flux in Col6a1-/- muscles ameliorates these alterations. (PMID:21037586)
- the COL6A1 rs35796750 TT genotype is associated with increased performance during the bicycling of the South African Ironman triathlon (PMID:22012643)
- TP-alpha, collagen alpha-1(VI) chain and S100A9 are potential biomarkers of esophageal squamous cell carcinoma, and may play an important role in tumorigenesis and development of ESCC. (PMID:22583932)
- COL3A1 rs1800255, COL6A1 rs35796750 and COL12A1 rs970547 were not significantly associated with sit-and-reach, straight leg raise or total shoulder rotation range of motion (PMID:23013106)
- XPD mutations in trichothiodystrophy hamper COL6A1 expression. (PMID:23221806)
- The resulting proposed clinical classification system of collagen VI-related myopathy is unique in that it is based on the integration of both motor function and pulmonary function criteria. (PMID:24271325)
- Absence of ANXA2 leads to retention of COL6 in a late-Golgi, VAMP2-positive compartment. (PMID:24357721)
- Mutations in each of the three collagen VI genes, COL6A1, COL6A2 and COL6A3, cause four types of muscle disorders: Ullrich congenital muscular dystrophy, Bethlem myopathy, limb-girdle muscular dystrophy, and autosomal recessive myosclerosis. (Review) (PMID:24443028)
- These results suggest that these SNPs of BMP-2 and COL6A1 may not directly influence the expression of OPLL. (PMID:24737472)
- In UCDM, 1 mutation was indentified in COL6A1 in Chinese patients. (PMID:24801232)
- The second main finding of this study was that COL6A1 rs35796750 did not associate with the risk of anterior cruciate ligament injury in the self-reported Caucasian South African cohort. (PMID:25073002)
- Data suggest the potential role of COL6 in promoting lung neoplasia in diseased lungs where COL6 is overexpressed. (PMID:25176343)
- Parental mosaicism was confirmed in the four families through quantitative analysis of the ratio of mutant versus wild-type allele (COL6A1, COL6A2, and COL6A3) in genomic DNA from various tissues; consistent with somatic mosaicism, parental samples had lower ratios of mutant versus wild-type allele compared with the fully heterozygote offspring. (PMID:25204870)
- Data indicate that collagen-VI-alpha-1 (COL6A1) is expressed in all grades of glioma. (PMID:25325876)
- worsening of the functional disability appeared typically after the age of 40 in 47% of our patients with Bethlem myopathy, and was frequently associated with COL6A1 exon 14 skipping (PMID:25535305)
- upregulated in the airways of chronic obstructive pulmonary disease patients and exposed upon epithelial desquamation (PMID:25925694)
- is the first report of UCMD recurrence in 2 siblings due to a germline mosaic COL6 gene mutation (PMID:25978941)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | col6a1 | ENSDARG00000074908 |
| mus_musculus | Col6a1 | ENSMUSG00000001119 |
| rattus_norvegicus | Col6a1 | ENSRNOG00000001249 |
Paralogs (37): COL9A2 (ENSG00000049089), COL23A1 (ENSG00000050767), COL11A1 (ENSG00000060718), COL17A1 (ENSG00000065618), COL5A3 (ENSG00000080573), COL4A4 (ENSG00000081052), COL16A1 (ENSG00000084636), COL9A3 (ENSG00000092758), COL20A1 (ENSG00000101203), COL1A1 (ENSG00000108821), COL9A1 (ENSG00000112280), COL7A1 (ENSG00000114270), COL21A1 (ENSG00000124749), COL5A1 (ENSG00000130635), COL4A2 (ENSG00000134871), COL2A1 (ENSG00000139219), COL6A2 (ENSG00000142173), EDA (ENSG00000158813), COL26A1 (ENSG00000160963), COL1A2 (ENSG00000164692), COL3A1 (ENSG00000168542), COL4A3 (ENSG00000169031), COL22A1 (ENSG00000169436), COL24A1 (ENSG00000171502), COL18A1 (ENSG00000182871), EMID1 (ENSG00000186998), COL4A1 (ENSG00000187498), COL4A5 (ENSG00000188153), COL25A1 (ENSG00000188517), COL27A1 (ENSG00000196739), COL13A1 (ENSG00000197467), COL4A6 (ENSG00000197565), COL11A2 (ENSG00000204248), COL5A2 (ENSG00000204262), COL15A1 (ENSG00000204291), COLQ (ENSG00000206561), COL28A1 (ENSG00000215018)
Protein
Protein identifiers
Collagen alpha-1(VI) chain — P12109 (reviewed: P12109)
All UniProt accessions (4): P12109, A0A087X0S5, A0A384P5H7, A0A804HJ28
UniProt curated annotations — full annotation on UniProt →
Function. Collagen VI acts as a cell-binding protein.
Subunit / interactions. Trimers composed of three different chains: alpha-1(VI), alpha-2(VI), and alpha-3(VI) or alpha-5(VI) or alpha-6(VI).
Subcellular location. Secreted. Extracellular space. Extracellular matrix.
Post-translational modifications. Prolines at the third position of the tripeptide repeating unit (G-X-Y) are hydroxylated in some or all of the chains.
Disease relevance. Bethlem myopathy 1A (BTHLM1A) [MIM:158810] A form of Bethlem myopathy, a slowly progressive muscular dystrophy characterized by joint contractures, most frequently affecting the elbows and ankles, and muscle weakness and wasting involving the proximal and extensor muscles more than the distal and flexor ones. The clinical onset more often occurs in childhood or adulthood, but it can be prenatal with decreased fetal movements or neonatal with hypotonia. The hallmark of Bethlem myopathy is long finger flexion contractures. Inheritance can be autosomal dominant or autosomal recessive. The disease is caused by variants affecting the gene represented in this entry. Ullrich congenital muscular dystrophy 1A (UCMD1A) [MIM:254090] A form of Ullrich congenital muscular dystrophy, a disease characterized by generalized muscle weakness and striking hypermobility of distal joints in conjunction with variable contractures of more proximal joints and normal intelligence. Additional findings may include kyphoscoliosis, protruded calcanei, and follicular hyperkeratosis (rough skin). More severely affected patients manifest at birth and never achieve independent ambulation, while patients with milder phenotypes might maintain ambulation into adulthood. Inheritance can be autosomal dominant or autosomal recessive. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the type VI collagen family.
RefSeq proteins (1): NP_001839* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002035 | VWF_A | Domain |
| IPR008160 | Collagen | Repeat |
| IPR036465 | vWFA_dom_sf | Homologous_superfamily |
| IPR050525 | ECM_Assembly_Org | Family |
Pfam: PF00092, PF01391
UniProt features (47 total): sequence variant 18, compositionally biased region 7, glycosylation site 5, sequence conflict 5, region of interest 4, short sequence motif 3, domain 3, signal peptide 1, chain 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9GTU | ELECTRON MICROSCOPY | 3.14 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P12109-F1 | 71.28 | 0.30 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (5): 212, 516, 537, 804, 896
Function
Pathways and Gene Ontology
Reactome pathways
8 pathways
| ID | Pathway |
|---|---|
| R-HSA-1442490 | Collagen degradation |
| R-HSA-1650814 | Collagen biosynthesis and modifying enzymes |
| R-HSA-186797 | Signaling by PDGF |
| R-HSA-2022090 | Assembly of collagen fibrils and other multimeric structures |
| R-HSA-216083 | Integrin cell surface interactions |
| R-HSA-3000178 | ECM proteoglycans |
| R-HSA-419037 | NCAM1 interactions |
| R-HSA-8948216 | Collagen chain trimerization |
MSigDB gene sets: 686 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_UP, GOBP_CIRCADIAN_RHYTHM, GOBP_SINGLE_FERTILIZATION, GOBP_MEMBRANE_DEPOLARIZATION, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_NUCLEOSIDE_DIPHOSPHATE_METABOLIC_PROCESS, GOBP_LUNG_EPITHELIUM_DEVELOPMENT, GOBP_RESPIRATORY_GASEOUS_EXCHANGE_BY_RESPIRATORY_SYSTEM, GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_SKELETAL_MUSCLE_TISSUE_REGENERATION, GOBP_BEHAVIOR, GOBP_COLLAGEN_FIBRIL_ORGANIZATION, GOBP_CARTILAGE_DEVELOPMENT, GOBP_SKELETAL_SYSTEM_DEVELOPMENT
GO Biological Process (88): response to reactive oxygen species (GO:0000302), cell morphogenesis (GO:0000902), osteoblast differentiation (GO:0001649), hair follicle development (GO:0001942), reduction of food intake in response to dietary excess (GO:0002023), muscle system process (GO:0003012), respiratory system process (GO:0003016), glycolytic process (GO:0006096), tricarboxylic acid cycle (GO:0006099), 2-oxoglutarate metabolic process (GO:0006103), energy reserve metabolic process (GO:0006112), autophagy (GO:0006914), inflammatory response (GO:0006954), mitochondrion organization (GO:0007005), cell adhesion (GO:0007155), single fertilization (GO:0007338), heart development (GO:0007507), circadian rhythm (GO:0007623), insulin receptor signaling pathway (GO:0008286), regulation of cell size (GO:0008361), response to xenobiotic stimulus (GO:0009410), response to UV (GO:0009411), response to wounding (GO:0009611), response to mechanical stimulus (GO:0009612), response to toxic substance (GO:0009636), gene expression (GO:0010467), muscle cell apoptotic process (GO:0010657), response to muscle activity (GO:0014850), transmission of nerve impulse (GO:0019226), myelination in peripheral nervous system (GO:0022011), collagen fibril organization (GO:0030199), apoptotic nuclear changes (GO:0030262), bone mineralization (GO:0030282), response to lipopolysaccharide (GO:0032496), collagen metabolic process (GO:0032963), endodermal cell differentiation (GO:0035987), limb joint morphogenesis (GO:0036022), response to decreased oxygen levels (GO:0036293), skeletal muscle tissue regeneration (GO:0043403), phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0043491)
GO Molecular Function (4): collagen binding (GO:0005518), extracellular matrix structural constituent conferring tensile strength (GO:0030020), platelet-derived growth factor binding (GO:0048407), protein binding (GO:0005515)
GO Cellular Component (17): extracellular region (GO:0005576), collagen type VI trimer (GO:0005589), basement membrane (GO:0005604), mitochondrion (GO:0005739), lysosomal membrane (GO:0005765), endoplasmic reticulum lumen (GO:0005788), membrane (GO:0016020), sarcoplasmic reticulum (GO:0016529), myofibril (GO:0030016), extracellular matrix (GO:0031012), protein-containing complex (GO:0032991), sarcolemma (GO:0042383), extracellular exosome (GO:0070062), intracellular vesicle (GO:0097708), collagen trimer (GO:0005581), lysosome (GO:0005764), endoplasmic reticulum (GO:0005783)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| Collagen formation | 2 |
| Extracellular matrix organization | 2 |
| Degradation of the extracellular matrix | 1 |
| Signaling by Receptor Tyrosine Kinases | 1 |
| NCAM signaling for neurite out-growth | 1 |
| Collagen biosynthesis and modifying enzymes | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| intracellular membrane-bounded organelle | 3 |
| system process | 2 |
| aerobic respiration | 2 |
| cellular anatomical structure | 2 |
| cytoplasm | 2 |
| endoplasmic reticulum | 2 |
| response to oxidative stress | 1 |
| response to oxygen-containing compound | 1 |
| anatomical structure morphogenesis | 1 |
| ossification | 1 |
| cell differentiation | 1 |
| hair cycle process | 1 |
| anatomical structure development | 1 |
| skin epidermis development | 1 |
| response to dietary excess | 1 |
| eating behavior | 1 |
| respiratory gaseous exchange by respiratory system | 1 |
| phosphoglycerate kinase activity | 1 |
| phosphoglycerate mutase activity | 1 |
| phosphopyruvate hydratase activity | 1 |
| pyruvate kinase activity | 1 |
| pyruvate metabolic process | 1 |
| generation of precursor metabolites and energy | 1 |
| carbohydrate catabolic process | 1 |
| pyridine nucleotide catabolic process | 1 |
| glyceraldehyde-3-phosphate dehydrogenase [NAD(P)+] (phosphorylating) activity | 1 |
| ADP catabolic process | 1 |
| ATP metabolic process | 1 |
| nicotinamide nucleotide metabolic process | 1 |
| primary metabolic process | 1 |
| dicarboxylic acid metabolic process | 1 |
| energy derivation by oxidation of organic compounds | 1 |
| catabolic process | 1 |
| transmembrane transport | 1 |
| process utilizing autophagic mechanism | 1 |
| defense response | 1 |
| organelle organization | 1 |
| cellular process | 1 |
| fertilization | 1 |
| animal organ development | 1 |
Protein interactions and networks
STRING
2756 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| COL6A1 | COL6A2 | P12110 | 965 |
| COL6A1 | COL6A3 | P12111 | 963 |
| COL6A1 | LAMB1 | P07942 | 810 |
| COL6A1 | ITGA5 | P08648 | 764 |
| COL6A1 | BGN | P13247 | 724 |
| COL6A1 | FN1 | P02751 | 723 |
| COL6A1 | A0A087WVV2 | A0A087WVV2 | 714 |
| COL6A1 | LAMA2 | P24043 | 713 |
| COL6A1 | COL1A1 | P02452 | 711 |
| COL6A1 | TNXB | P22105 | 703 |
| COL6A1 | PFKL | P17858 | 698 |
| COL6A1 | THBS4 | P35443 | 665 |
| COL6A1 | COL5A2 | P05997 | 662 |
| COL6A1 | LAMA5 | O15230 | 652 |
| COL6A1 | PPIF | P30405 | 649 |
IntAct
158 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| C1QTNF9 | C1QTNF9B | psi-mi:“MI:0914”(association) | 0.780 |
| MMP9 | TIMP1 | psi-mi:“MI:0914”(association) | 0.640 |
| AGRP | TK1 | psi-mi:“MI:0914”(association) | 0.640 |
| MMP2 | COL4A1 | psi-mi:“MI:0914”(association) | 0.640 |
| DEFA1 | MANBA | psi-mi:“MI:0914”(association) | 0.530 |
| OS9 | AGRN | psi-mi:“MI:0914”(association) | 0.530 |
| PLA2G10 | CHEK1 | psi-mi:“MI:0914”(association) | 0.530 |
| WNT4 | TOMM40 | psi-mi:“MI:0914”(association) | 0.530 |
| WNT7A | LDLR | psi-mi:“MI:0914”(association) | 0.530 |
| PLOD2 | psi-mi:“MI:0914”(association) | 0.530 | |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| INSL5 | COCH | psi-mi:“MI:0914”(association) | 0.530 |
| C1QTNF9B | PLOD3 | psi-mi:“MI:0914”(association) | 0.530 |
| PLOD3 | COL4A1 | psi-mi:“MI:0914”(association) | 0.530 |
| PLOD3 | PLOD2 | psi-mi:“MI:0914”(association) | 0.530 |
| TIMP3 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| CNPY3 | LRIG2 | psi-mi:“MI:0914”(association) | 0.530 |
| GPIHBP1 | ADAM10 | psi-mi:“MI:0914”(association) | 0.530 |
| LAIR2 | LAMA5 | psi-mi:“MI:0914”(association) | 0.530 |
| LYZL6 | COL6A1 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (135): COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS), COL6A1 (Affinity Capture-MS)
ESM2 similar proteins: A2A863, A6H584, E1BMV3, P00751, P04186, P04412, P05099, P12106, P12109, P12110, P13944, P15988, P16144, P20785, P20849, P21941, P24043, P51942, P58335, P81187, P83371, P98085, Q02788, Q03710, Q04857, Q05722, Q07092, Q13219, Q2UY09, Q2UY11, Q60847, Q641F3, Q64632, Q6AYF4, Q6DFX2, Q6ZMI3, Q801S8, Q80WL1, Q864V9, Q864W0
Diamond homologs: A2AX52, A6H584, A6NMZ7, A8TX70, E7FF10, O00339, O08746, O35701, O42163, O43405, O75578, O89029, O95460, P05555, P12109, P12111, P13944, P15989, P18614, P20785, P32018, P34576, P56199, P61622, P61625, P84552, Q02388, Q05707, Q21281, Q21540, Q28902, Q3V3R4, Q5EA64, Q62507, Q63870, Q641F3, Q642A6, Q80X19, Q8C6K9, Q8NFW1
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| COL6A1 | up-regulates | ECM_synthesis |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 174 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Negative regulation of TCF-dependent signaling by WNT ligand antagonists | 5 | 30.2× | 4e-05 |
| WNT ligand biogenesis and trafficking | 7 | 25.1× | 1e-06 |
| Attachment of bacteria to epithelial cells | 5 | 21.0× | 2e-04 |
| Collagen biosynthesis and modifying enzymes | 12 | 17.3× | 2e-09 |
| MET activates PTK2 signaling | 5 | 16.1× | 5e-04 |
| Collagen degradation | 10 | 14.9× | 3e-07 |
| Assembly of collagen fibrils and other multimeric structures | 8 | 13.6× | 1e-05 |
| Collagen chain trimerization | 6 | 13.2× | 3e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| regulation of postsynapse organization | 5 | 17.4× | 2e-03 |
| cell fate commitment | 8 | 15.7× | 3e-05 |
| collagen fibril organization | 9 | 13.4× | 3e-05 |
| extracellular matrix disassembly | 5 | 12.1× | 5e-03 |
| cellular response to retinoic acid | 6 | 9.3× | 5e-03 |
| canonical Wnt signaling pathway | 9 | 9.1× | 3e-04 |
| positive regulation of MAPK cascade | 10 | 5.3× | 3e-03 |
| positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction | 10 | 5.2× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
2136 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 110 |
| Likely pathogenic | 59 |
| Uncertain significance | 550 |
| Likely benign | 672 |
| Benign | 206 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1072275 | NM_001848.3(COL6A1):c.823G>A (p.Gly275Arg) | Pathogenic |
| 1073810 | NM_001848.3(COL6A1):c.1738del (p.Gln580fs) | Pathogenic |
| 1073927 | NM_001848.3(COL6A1):c.1318G>T (p.Gly440Ter) | Pathogenic |
| 1076562 | NM_001848.3(COL6A1):c.877G>C (p.Gly293Arg) | Pathogenic |
| 1180683 | NM_001848.3(COL6A1):c.1003-1G>C | Pathogenic |
| 1299552 | NM_001848.3(COL6A1):c.2460C>A (p.Cys820Ter) | Pathogenic |
| 1322138 | NM_001848.3(COL6A1):c.1056+1G>C | Pathogenic |
| 1322140 | NM_001848.3(COL6A1):c.904-1G>T | Pathogenic |
| 1322141 | NM_001848.3(COL6A1):c.1612-1G>A | Pathogenic |
| 1374571 | NM_001848.3(COL6A1):c.931G>T (p.Gly311Cys) | Pathogenic |
| 1375454 | NM_001848.3(COL6A1):c.244C>T (p.Arg82Ter) | Pathogenic |
| 1389428 | NM_001848.3(COL6A1):c.1867_1868del (p.Ser623fs) | Pathogenic |
| 1421511 | NM_001848.3(COL6A1):c.958-2_958-1del | Pathogenic |
| 1457047 | NM_001848.3(COL6A1):c.50_51del (p.Thr17fs) | Pathogenic |
| 1457711 | NM_001848.3(COL6A1):c.739-2A>G | Pathogenic |
| 1458790 | NC_000021.8:g.(?47422287)(47423978_?)del | Pathogenic |
| 1459415 | NC_000021.8:g.(?47407403)(47407578_?)del | Pathogenic |
| 1460048 | NC_000021.8:g.(?47408988)(47410346_?)del | Pathogenic |
| 1482996 | NM_001848.3(COL6A1):c.1027_1056+76del | Pathogenic |
| 17169 | NM_001848.3(COL6A1):c.1577G>T (p.Gly526Val) | Pathogenic |
| 17170 | NM_001848.3(COL6A1):c.931-1G>A | Pathogenic |
| 17171 | NM_001848.3(COL6A1):c.1056+2T>C | Pathogenic |
| 17172 | NM_001848.3(COL6A1):c.1022G>A (p.Gly341Asp) | Pathogenic |
| 17173 | NM_001848.3(COL6A1):c.362A>G (p.Lys121Arg) | Pathogenic |
| 17175 | NM_001848.3(COL6A1):c.805-572_903+5delinsTCCCTCCCCATTTCC | Pathogenic |
| 17176 | NM_001848.3(COL6A1):c.428+1G>A | Pathogenic |
| 17177 | NM_001848.3(COL6A1):c.857del (p.Pro286fs) | Pathogenic |
| 17178 | NM_001848.3(COL6A1):c.1465del (p.Ala489fs) | Pathogenic |
| 17179 | NM_001848.3(COL6A1):c.1977C>G (p.Tyr659Ter) | Pathogenic |
| 17181 | NM_001848.3(COL6A1):c.868G>C (p.Gly290Arg) | Pathogenic |
SpliceAI
4535 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 21:45981946:GG:G | donor_gain | 1.0000 |
| 21:45981947:GG:G | donor_gain | 1.0000 |
| 21:45982627:C:A | acceptor_gain | 1.0000 |
| 21:45982761:CAGG:C | donor_loss | 1.0000 |
| 21:45982762:AGGT:A | donor_loss | 1.0000 |
| 21:45982765:T:A | donor_loss | 1.0000 |
| 21:45984263:T:TA | acceptor_gain | 1.0000 |
| 21:45984265:GCA:G | acceptor_loss | 1.0000 |
| 21:45984266:CAG:C | acceptor_loss | 1.0000 |
| 21:45984400:TC:T | donor_gain | 1.0000 |
| 21:45984465:GTGGG:G | donor_gain | 1.0000 |
| 21:45984466:TGGG:T | donor_gain | 1.0000 |
| 21:45984467:GGG:G | donor_gain | 1.0000 |
| 21:45984467:GGGG:G | donor_gain | 1.0000 |
| 21:45984468:GG:G | donor_gain | 1.0000 |
| 21:45984468:GGG:G | donor_gain | 1.0000 |
| 21:45984469:GG:G | donor_gain | 1.0000 |
| 21:45984470:G:GG | donor_gain | 1.0000 |
| 21:45986521:TCCA:T | acceptor_loss | 1.0000 |
| 21:45986522:CCA:C | acceptor_loss | 1.0000 |
| 21:45986523:CAG:C | acceptor_loss | 1.0000 |
| 21:45986524:A:AC | acceptor_loss | 1.0000 |
| 21:45986524:A:AG | acceptor_gain | 1.0000 |
| 21:45986524:AG:A | acceptor_gain | 1.0000 |
| 21:45986524:AGG:A | acceptor_gain | 1.0000 |
| 21:45986525:G:A | acceptor_gain | 1.0000 |
| 21:45986525:G:GT | acceptor_gain | 1.0000 |
| 21:45986525:GGG:G | acceptor_gain | 1.0000 |
| 21:45987122:A:T | donor_gain | 1.0000 |
| 21:45987125:G:GG | donor_gain | 1.0000 |
AlphaMissense
6646 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 21:45982670:C:T | S45F | 1.000 |
| 21:45984297:T:A | W86R | 1.000 |
| 21:45984297:T:C | W86R | 1.000 |
| 21:45982636:T:C | C34R | 0.999 |
| 21:45982649:T:C | L38P | 0.999 |
| 21:45982663:G:C | D43H | 0.999 |
| 21:45982664:A:C | D43A | 0.999 |
| 21:45982664:A:T | D43V | 0.999 |
| 21:45982669:T:C | S45P | 0.999 |
| 21:45982670:C:A | S45Y | 0.999 |
| 21:45982675:A:C | S47R | 0.999 |
| 21:45982677:C:A | S47R | 0.999 |
| 21:45982677:C:G | S47R | 0.999 |
| 21:45984299:G:C | W86C | 0.999 |
| 21:45984299:G:T | W86C | 0.999 |
| 21:45984313:T:C | L91P | 0.999 |
| 21:45984429:G:C | D130H | 0.999 |
| 21:45984432:T:A | C131S | 0.999 |
| 21:45984432:T:C | C131R | 0.999 |
| 21:45984433:G:C | C131S | 0.999 |
| 21:45984436:C:A | A132D | 0.999 |
| 21:45984447:G:T | G136W | 0.999 |
| 21:45986555:T:C | L153P | 0.999 |
| 21:45986569:G:C | D158H | 0.999 |
| 21:45986570:A:T | D158V | 0.999 |
| 21:45986572:G:T | G159W | 0.999 |
| 21:45986573:G:A | G159E | 0.999 |
| 21:45986602:T:A | C169S | 0.999 |
| 21:45986602:T:C | C169R | 0.999 |
| 21:45986603:G:C | C169S | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000009752 (21:45987291 T>C,G), RS1000078400 (21:45988839 G>A,T), RS1000217613 (21:45997023 C>T), RS1000326828 (21:45983448 G>A), RS1000328339 (21:46000932 C>A,T), RS1000332415 (21:46000274 A>C,G), RS1000361166 (21:45987445 A>G), RS1000608230 (21:45996118 T>A), RS1000844177 (21:46001116 T>C), RS1001020201 (21:45994735 G>A), RS1001023910 (21:45993481 C>A), RS1001192136 (21:46002158 T>C), RS1001261552 (21:46002959 G>A), RS1001274995 (21:46002875 C>T), RS1001292077 (21:46005458 G>A,C)
Disease associations
OMIM: gene MIM:120220 | disease phenotypes: MIM:158810, MIM:254090, MIM:620725, MIM:130000
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Bethlem myopathy 1A | Definitive | Autosomal dominant |
| Ullrich congenital muscular dystrophy 1A | Strong | Autosomal dominant |
| Bethlem myopathy | Supportive | Autosomal dominant |
| Ullrich congenital muscular dystrophy | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| collagen 6-related myopathy | Definitive | AD |
| collagen 6-related myopathy | Definitive | AR |
Mondo (9): Bethlem myopathy 1A (MONDO:0024530), Ullrich congenital muscular dystrophy 1A (MONDO:0009681), collagen 6-related myopathy (MONDO:0100225), myopathy (MONDO:0005336), breast ductal adenocarcinoma (MONDO:0005590), Bethlem myopathy 1B (MONDO:0958233), Ehlers-Danlos syndrome (MONDO:0020066), Bethlem myopathy (MONDO:0008029), Ullrich congenital muscular dystrophy (MONDO:0000355)
Orphanet (3): Bethlem muscular dystrophy (Orphanet:610), Ullrich congenital muscular dystrophy (Orphanet:75840), Ehlers-Danlos syndrome (Orphanet:98249)
HPO phenotypes
119 total (30 of 119 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000010 | Recurrent urinary tract infections |
| HP:0000093 | Proteinuria |
| HP:0000174 | Abnormal palate morphology |
| HP:0000218 | High palate |
| HP:0000311 | Round face |
| HP:0000347 | Micrognathia |
| HP:0000411 | Protruding ear |
| HP:0000467 | Neck muscle weakness |
| HP:0000470 | Short neck |
| HP:0000473 | Torticollis |
| HP:0000565 | Esotropia |
| HP:0000962 | Hyperkeratosis |
| HP:0000975 | Hyperhidrosis |
| HP:0000988 | Skin rash |
| HP:0001073 | Cigarette-paper scars |
| HP:0001181 | Adducted thumb |
| HP:0001220 | Interphalangeal joint contracture of finger |
| HP:0001238 | Slender finger |
| HP:0001239 | Wrist flexion contracture |
| HP:0001249 | Intellectual disability |
| HP:0001270 | Motor delay |
| HP:0001284 | Areflexia |
| HP:0001288 | Gait disturbance |
| HP:0001290 | Generalized hypotonia |
| HP:0001319 | Neonatal hypotonia |
| HP:0001324 | Muscle weakness |
| HP:0001371 | Flexion contracture |
| HP:0001374 | Congenital hip dislocation |
GWAS associations
24 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003997_8 | Myopia | 5.000000e-13 |
| GCST004063_105 | Waist circumference adjusted for body mass index | 1.000000e-07 |
| GCST004063_158 | Waist circumference adjusted for body mass index | 4.000000e-08 |
| GCST005170_24 | Intraocular pressure | 8.000000e-09 |
| GCST005580_224 | Intraocular pressure | 3.000000e-19 |
| GCST005783_2 | Bone mineral density (lumbar spine) in inflammatory bowel disease | 8.000000e-07 |
| GCST006291_125 | Spherical equivalent or myopia (age of diagnosis) | 1.000000e-14 |
| GCST006479_118 | Diverticular disease | 5.000000e-11 |
| GCST006585_2533 | Blood protein levels | 4.000000e-33 |
| GCST006626_18 | Pulse pressure | 2.000000e-09 |
| GCST007269_3 | Pulse pressure | 3.000000e-10 |
| GCST007829_5 | Systolic blood pressure | 1.000000e-07 |
| GCST008276_8 | Corneal resistance factor | 1.000000e-11 |
| GCST008315_2 | Corneal hysteresis | 1.000000e-07 |
| GCST008318_4 | Corneal resistance factor | 2.000000e-10 |
| GCST010002_78 | Refractive error | 2.000000e-36 |
| GCST011390_13 | Corneal resistance factor | 1.000000e-101 |
| GCST011391_11 | Corneal hysteresis | 8.000000e-98 |
| GCST011494_105 | Daytime nap | 4.000000e-11 |
| GCST012226_841 | Waist circumference adjusted for body mass index | 1.000000e-08 |
| GCST012402_14 | Low myopia | 3.000000e-06 |
| GCST90013442_35 | Keratoconus | 9.000000e-12 |
| GCST90020029_165 | Waist circumference adjusted for body mass index | 4.000000e-09 |
| GCST90020029_166 | Waist circumference adjusted for body mass index | 8.000000e-09 |
EFO canonical traits (10, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0004695 | intraocular pressure measurement |
| EFO:0007701 | spine bone mineral density |
| EFO:0004847 | age at onset |
| EFO:0009959 | diverticular disease |
| EFO:0005763 | pulse pressure measurement |
| EFO:0006944 | systolic blood pressure change measurement |
| EFO:0010067 | corneal resistance factor |
| EFO:0010066 | corneal hysteresis |
| EFO:0007828 | daytime rest measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018270 | Carcinoma, Ductal, Breast | C04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390 |
| D004535 | Ehlers-Danlos Syndrome | C14.907.454.240; C15.378.463.515.240; C16.131.831.428; C16.320.850.260; C17.300.200.310; C17.800.804.428; C17.800.827.260 |
| C535436 | Bethlem myopathy (supp.) | |
| C537521 | Scleroatonic muscular dystrophy (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2364188 (PROTEIN COMPLEX GROUP)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
73 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases methylation, affects cotreatment, decreases expression | 3 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| bisphenol S | affects cotreatment, decreases methylation, increases expression, decreases expression | 3 |
| Valproic Acid | increases expression, increases methylation, affects expression | 3 |
| entinostat | increases expression, affects cotreatment | 2 |
| Panobinostat | increases expression, affects cotreatment | 2 |
| Estradiol | affects cotreatment, increases expression | 2 |
| Phenytoin | decreases expression, increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 2 |
| Tretinoin | decreases expression | 2 |
| Isotretinoin | decreases expression, increases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance | 2 |
| aristolochic acid I | increases expression | 1 |
| bisphenol F | increases expression | 1 |
| 4-oxoretinoic acid | decreases expression | 1 |
| selenomethylselenocysteine | increases expression | 1 |
| testosterone enanthate | affects expression | 1 |
| methylselenic acid | increases expression | 1 |
| methylparaben | decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| pyrrolidine dithiocarbamic acid | affects cotreatment, decreases expression, decreases reaction | 1 |
| azelastine | decreases expression | 1 |
| tanshinone | decreases expression | 1 |
| manganese chloride | decreases expression, increases abundance | 1 |
| ochratoxin A | increases acetylation, increases expression | 1 |
| potassium chromate(VI) | affects cotreatment, increases expression | 1 |
| epigallocatechin gallate | affects cotreatment, increases expression | 1 |
| celastrol | decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| Y 27632 | increases expression, decreases reaction | 1 |
Cellosaurus cell lines
22 cell lines: 10 induced pluripotent stem cell, 7 transformed cell line, 4 finite cell line, 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_4T47 | GM23330 | Finite cell line | Male |
| CVCL_4T56 | GM24221 | Transformed cell line | Female |
| CVCL_4T70 | GM24259 | Finite cell line | Male |
| CVCL_4T71 | GM24384 | Finite cell line | Male |
| CVCL_4T73 | GM24405 | Finite cell line | Female |
| CVCL_4T74 | GM24415 | Transformed cell line | Male |
| CVCL_A2PX | GM27123 | Transformed cell line | Female |
| CVCL_B2UT | Abcam HEK293T COL6A1 KO | Transformed cell line | Female |
| CVCL_D0Z7 | HPS3209 | Induced pluripotent stem cell | Male |
| CVCL_D0Z8 | HPS3210 | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
110 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00120055 | PHASE4 | COMPLETED | Association Between Systemic Exposure of Atorvastatin and Metabolites and Atorvastatin-induced Myotoxicity |
| NCT03633565 | PHASE4 | UNKNOWN | Comparative Study of Strategies for Management of Duchenne Myopathy (DM) |
| NCT04890431 | PHASE4 | UNKNOWN | Impact of Oxygen Therapy on Fatigue in Patients With Hypermobile-type Ehlers-Danlos Syndrome |
| NCT05603741 | PHASE4 | ACTIVE_NOT_RECRUITING | Local Anesthetic Response in Ehlers-Danlos Syndrome (EDS) and Healthy Volunteers |
| NCT01225614 | PHASE3 | UNKNOWN | Efficacy and Tolerance of Early Launching of Nocturnal Non Invasive |
| NCT03414970 | PHASE3 | ACTIVE_NOT_RECRUITING | Hypofractionated Radiation Therapy After Mastectomy in Preventing Recurrence in Patients With Stage IIa-IIIa Breast Cancer |
| NCT05279937 | PHASE3 | NOT_YET_RECRUITING | The Ultrasound-Guided Dextrose Prolotherapy in Ehlers-Danlos Syndrome Patients |
| NCT01438788 | PHASE2 | COMPLETED | Low Protein Diet in Patients With Collagen VI Related Myopathies |
| NCT00461344 | PHASE2 | TERMINATED | Docetaxel + Doxorubicin as Neoadjuvant Chemotherapy in Patients With Breast Cancer |
| NCT07499999 | PHASE2 | NOT_YET_RECRUITING | Randomized Double-Blind Phase II Trial of Baby Exemestane Versus Baby Tamoxifen in Post-Menopausal Women at High Risk for Breast Cancer |
| NCT00001966 | PHASE2 | COMPLETED | Mind-Body Therapy for Pain in Ehlers-Danlos Syndrome |
| NCT00278564 | PHASE1 | TERMINATED | Stem Cell Transplantation in Idiopathic Inflammatory Myopathy Diseases |
| NCT04020159 | Not specified | UNKNOWN | Global Registry for COL6-related Dystrophies |
| NCT01895283 | Not specified | COMPLETED | The Effect of Aerobic Exercise, on Fitness and Functional Muscle Strength, in Patients With Muscular Dystrophy |
| NCT03693898 | Not specified | UNKNOWN | MR in Patients With Collagen VI Related Myopathies |
| NCT01642056 | PHASE1/PHASE2 | COMPLETED | EPI-743 for Metabolism or Mitochondrial Disorders |
| NCT02124070 | PHASE1/PHASE2 | WITHDRAWN | Therapeutic Effect of Recombinant Human Growth Hormone (rhGH) on the Myopathy of Cystinosis |
| NCT00549029 | Not specified | UNKNOWN | The Association of Genetic Polymorphisms With Statin-Induced Myopathy. |
| NCT00767130 | Not specified | UNKNOWN | DNA Diagnostic System for Statin Safety and Efficacy |
| NCT00922428 | Not specified | COMPLETED | PASCOE-Agil HOM-Injektopas in the Treatment of Rheumatic Disorders |
| NCT00937001 | Not specified | ACTIVE_NOT_RECRUITING | Critical Illness Myopathy as a Cause of Debilitating ICU-Acquired Weakness |
| NCT00990834 | Not specified | WITHDRAWN | Muscle Characteristics Associated With Statin Therapy |
| NCT01022450 | Not specified | UNKNOWN | Study of the Causes of the Breakdown of Muscle Fibers in Hospitalized Patients |
| NCT01040650 | Not specified | TERMINATED | Metabolic Features of Post-Myopathy Patients Associated With Statin Treatment |
| NCT01047163 | Not specified | COMPLETED | Maintenance of Muscle Mass in Older People: the Negative Impact of Statin Therapy |
| NCT01270269 | Not specified | COMPLETED | ACT-ICU Study: Activity and Cognitive Therapy in the Intensive Care Unit |
| NCT01353430 | Not specified | RECRUITING | Characterization of Inclusion Body Myopathy Associated With Paget’s Disease of Bone and Frontotemporal Dementia (IBMPFD) |
| NCT01395563 | Not specified | WITHDRAWN | Strength Training on Pancreatic Cancer |
| NCT01530841 | Not specified | COMPLETED | Efficacy and Tolerance of AVAPS Mode in Myotonic Dystrophy |
| NCT01547767 | Not specified | COMPLETED | Investigations Into ISCU Myopathy or Iron Sulfur Scaffold U Protein Myopathy |
| NCT01702987 | Not specified | COMPLETED | Evaluation of Ubiquinol on Mitochondrial Oxidative Capacity in Statin Patients Using 31PMRS |
| NCT01790178 | Not specified | COMPLETED | Ultrasound in Muscle Biopsy |
| NCT02011282 | Not specified | COMPLETED | Electro-Neuro-Muscular Stimulation in ICU |
| NCT02104921 | Not specified | COMPLETED | Innovative Ultrasound Technology in Neuromuscular Disease |
| NCT02118805 | Not specified | COMPLETED | Innovative Measures of Speech and Swallowing Dysfunction in Neurological Disorders |
| NCT02235220 | Not specified | UNKNOWN | Reduction of Masticatory Muscle Activity by Restoring Canine Guidance |
| NCT02247895 | Not specified | TERMINATED | Treatment of Muscle Weakness in Critically Ill Patients |
| NCT02315339 | Not specified | TERMINATED | European Home Mechanical Ventilation Registry |
| NCT02442986 | Not specified | COMPLETED | Neurological Outcome in Surgical and Non-surgical Septic Patients |
| NCT02706314 | Not specified | COMPLETED | Impact of Human Blood Serum From Critically Ill Patients on Human Colon Neuronal Networks. |
Related Atlas pages
- Associated diseases: Bethlem myopathy 1A, Ullrich congenital muscular dystrophy 1A, Bethlem myopathy, Ullrich congenital muscular dystrophy, collagen 6-related myopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Bethlem myopathy, Bethlem myopathy 1A, Bethlem myopathy 1B, collagen 6-related myopathy, Ehlers-Danlos syndrome, keratoconus, myopathy, refractive error, Ullrich congenital muscular dystrophy, Ullrich congenital muscular dystrophy 1A