COL6A2-DT

Summary

COL6A2-DT (COL6A2 divergent transcript, HGNC:55814) is a long non-coding RNA gene on chromosome 21q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55814
Approved symbol	COL6A2-DT
Name	COL6A2 divergent transcript
Location	21q22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227438
Ensembl biotype	lncRNA
Entrez	122152369
RNAcentral	URS00026A2476 — lncRNA, 2155 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000454245

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000454245 — 2 exons

Exon	Start	End
ENSE00001661271	46093264	46093876
ENSE00001776573	46097472	46097530

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 76.30.

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	76.30	gold quality
myometrium	UBERON:0001296	63.50	gold quality
stromal cell of endometrium	CL:0002255	63.25	gold quality
endocervix	UBERON:0000458	62.87	gold quality
descending thoracic aorta	UBERON:0002345	62.61	gold quality
thoracic aorta	UBERON:0001515	62.58	gold quality
ascending aorta	UBERON:0001496	62.48	gold quality
body of uterus	UBERON:0009853	62.00	gold quality
skeletal muscle tissue	UBERON:0001134	60.29	gold quality
left coronary artery	UBERON:0001626	60.04	gold quality
apex of heart	UBERON:0002098	59.04	gold quality
right coronary artery	UBERON:0001625	58.67	gold quality
placenta	UBERON:0001987	58.26	gold quality
popliteal artery	UBERON:0002250	58.22	gold quality
tibial artery	UBERON:0007610	58.16	gold quality
sural nerve	UBERON:0015488	57.82	silver quality
smooth muscle tissue	UBERON:0001135	57.79	gold quality
right ovary	UBERON:0002118	57.79	gold quality
urinary bladder	UBERON:0001255	57.38	gold quality
ectocervix	UBERON:0012249	57.18	gold quality
muscle layer of sigmoid colon	UBERON:0035805	57.17	gold quality
vagina	UBERON:0000996	56.57	gold quality
lymph node	UBERON:0000029	56.13	gold quality
lower esophagus muscularis layer	UBERON:0035833	56.01	gold quality
lower esophagus	UBERON:0013473	56.00	gold quality
fundus of stomach	UBERON:0001160	55.62	gold quality
subcutaneous adipose tissue	UBERON:0002190	55.23	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	55.22	gold quality
adipose tissue	UBERON:0001013	54.12	gold quality
endometrium	UBERON:0001295	54.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.27

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.