COL6A6
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Summary
COL6A6 (collagen type VI alpha 6 chain, HGNC:27023) is a protein-coding gene on chromosome 3q22.1, encoding Collagen alpha-6(VI) chain (A6NMZ7). Collagen VI acts as a cell-binding protein.
This gene encodes a large protein that contains multiple von Willebrand factor domains and forms a component of the basal lamina of epithelial cells. This protein may regulate epithelial cell-fibronectin interactions. Variation in this gene may be implicated in skin diseases.
Source: NCBI Gene 131873 — RefSeq curated summary.
At a glance
- Gene–disease (curated): myopathy (Limited, GenCC) — +1 more curated relationship
- GWAS associations: 2
- Clinical variants (ClinVar): 449 total — 1 likely-pathogenic
- Druggable target: yes
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 1 cancer types
- MANE Select transcript:
NM_001102608
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:27023 |
| Approved symbol | COL6A6 |
| Name | collagen type VI alpha 6 chain |
| Location | 3q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000206384 |
| Ensembl biotype | protein_coding |
| OMIM | 616613 |
| Entrez | 131873 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 2 protein_coding, 1 nonsense_mediated_decay
ENST00000358511, ENST00000506143, ENST00000511332
RefSeq mRNA: 1 — MANE Select: NM_001102608
NM_001102608
CCDS: CCDS46911
Canonical transcript exons
ENST00000358511 — 37 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001292631 | 130566702 | 130567262 |
| ENSE00001301102 | 130573956 | 130574525 |
| ENSE00001315758 | 130564994 | 130565614 |
| ENSE00001316756 | 130568047 | 130568604 |
| ENSE00001325751 | 130570818 | 130571393 |
| ENSE00001382669 | 130563068 | 130563664 |
| ENSE00001425142 | 130560334 | 130560428 |
| ENSE00001496655 | 130594281 | 130594343 |
| ENSE00001496658 | 130593199 | 130593252 |
| ENSE00001496660 | 130593061 | 130593105 |
| ENSE00001496662 | 130592696 | 130592722 |
| ENSE00001496663 | 130592541 | 130592612 |
| ENSE00001496666 | 130591041 | 130591094 |
| ENSE00001496669 | 130589090 | 130589182 |
| ENSE00001496670 | 130586506 | 130586660 |
| ENSE00001496672 | 130581990 | 130582068 |
| ENSE00001550317 | 130581561 | 130581904 |
| ENSE00001560620 | 130649069 | 130649562 |
| ENSE00002073792 | 130675202 | 130677042 |
| ENSE00003477648 | 130642987 | 130643023 |
| ENSE00003484410 | 130621821 | 130621883 |
| ENSE00003489056 | 130598365 | 130598430 |
| ENSE00003495658 | 130627319 | 130627369 |
| ENSE00003513286 | 130608902 | 130608964 |
| ENSE00003526726 | 130610649 | 130610711 |
| ENSE00003566799 | 130661637 | 130662308 |
| ENSE00003572784 | 130626485 | 130626547 |
| ENSE00003583160 | 130658676 | 130658772 |
| ENSE00003584488 | 130641652 | 130641714 |
| ENSE00003606149 | 130642832 | 130642867 |
| ENSE00003615829 | 130665003 | 130665096 |
| ENSE00003645801 | 130644991 | 130645002 |
| ENSE00003662480 | 130599757 | 130599810 |
| ENSE00003669786 | 130606931 | 130606966 |
| ENSE00003685013 | 130635699 | 130635761 |
| ENSE00003692040 | 130634590 | 130634625 |
| ENSE00003935578 | 130517177 | 130517397 |
Expression profiles
Bgee: expression breadth ubiquitous, 140 present calls, max score 91.29.
Top tissues by expression
231 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 91.29 | gold quality |
| parietal pleura | UBERON:0002400 | 88.76 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 82.07 | silver quality |
| visceral pleura | UBERON:0002401 | 81.82 | gold quality |
| lung | UBERON:0002048 | 80.76 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 79.99 | gold quality |
| upper lobe of lung | UBERON:0008948 | 79.76 | gold quality |
| lower lobe of lung | UBERON:0008949 | 79.27 | silver quality |
| skin of hip | UBERON:0001554 | 78.68 | gold quality |
| pituitary gland | UBERON:0000007 | 78.50 | gold quality |
| cardiac atrium | UBERON:0002081 | 77.67 | gold quality |
| cartilage tissue | UBERON:0002418 | 77.30 | gold quality |
| right lung | UBERON:0002167 | 77.26 | gold quality |
| right atrium auricular region | UBERON:0006631 | 77.18 | gold quality |
| secondary oocyte | CL:0000655 | 77.06 | gold quality |
| adenohypophysis | UBERON:0002196 | 76.99 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 75.99 | silver quality |
| mammary duct | UBERON:0001765 | 72.64 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 72.51 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 71.05 | gold quality |
| mammary gland | UBERON:0001911 | 70.81 | gold quality |
| heart | UBERON:0000948 | 67.61 | gold quality |
| tibialis anterior | UBERON:0001385 | 67.40 | silver quality |
| right coronary artery | UBERON:0001625 | 67.12 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 67.01 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 66.81 | gold quality |
| myocardium | UBERON:0002349 | 65.13 | silver quality |
| germinal epithelium of ovary | UBERON:0001304 | 64.57 | gold quality |
| heart left ventricle | UBERON:0002084 | 63.33 | gold quality |
| cardiac ventricle | UBERON:0002082 | 62.82 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.34 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
74 targeting COL6A6, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-3173-3P | 99.98 | 66.49 | 1217 |
| HSA-MIR-6891-5P | 99.98 | 66.53 | 1372 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-8082 | 99.95 | 67.27 | 1170 |
| HSA-MIR-498-3P | 99.91 | 71.27 | 1114 |
| HSA-MIR-8063 | 99.91 | 69.76 | 3146 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-4302 | 99.89 | 67.94 | 1187 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-4698 | 99.84 | 71.41 | 4303 |
| HSA-MIR-8076 | 99.78 | 68.52 | 1170 |
| HSA-MIR-494-3P | 99.70 | 71.45 | 2795 |
| HSA-MIR-4804-3P | 99.65 | 67.78 | 866 |
| HSA-MIR-1303 | 99.65 | 69.77 | 1662 |
| HSA-MIR-298 | 99.63 | 67.56 | 1916 |
| HSA-MIR-4756-3P | 99.62 | 66.30 | 1319 |
| HSA-MIR-3685 | 99.62 | 68.83 | 1621 |
| HSA-MIR-7152-5P | 99.60 | 69.33 | 2094 |
| HSA-MIR-1252-3P | 99.55 | 67.71 | 2862 |
| HSA-MIR-6832-3P | 99.52 | 70.44 | 1726 |
| HSA-MIR-486-5P | 99.51 | 70.39 | 707 |
| HSA-MIR-12117 | 99.50 | 67.57 | 868 |
| HSA-MIR-5689 | 99.50 | 71.26 | 1154 |
Literature-anchored findings (GeneRIF, showing 9)
- The discovery of three additional collagen VI chains doubles the collagen VI family and adds a layer of complexity to collagen VI assembly and function in the extracellular matrix. (PMID:18400749)
- localization of alpha5, and to a lesser extent alpha6, is restricted to the papillary dermis, where the protein mainly colocalizes with collagen fibrils; both chains were found around blood vessels (PMID:20882040)
- collagen VI alpha 6 is an important basal lamina component involved in the regulation of epithelial cell behavior most notably as a regulator of epithelial cell-fibronectin interactions (PMID:21406227)
- The collagen VI alpha6 chain, but not the alpha5 chain, is up-regulated in dystrophic muscles. (PMID:22226732)
- Reduced collagen VI alpha6 chain expression in the skeletal muscle is associated with collagen VI-related myopathies. (PMID:24907562)
- A whole-exome sequencing approach led to identification of a deletion in RHO through detection of a new linked variant in COL6A6 in autosomal dominant retinitis pigmentosa. (PMID:26321861)
- Study identified SNPs in COL6A6 associated with atopic dermatitis suggesting that COL6A6 variants may constitute candidate risk factors for early-onset atopic dermatitis. (PMID:28125976)
- Whole-genome sequencing reveals possible role of deleterious mutation of COL6A6 in ossification of the posterior longitudinal ligament of the thoracic spine in the Chinese population. (PMID:30577800)
- New COL6A6 Variant Causes Autosomal Dominant Retinitis Pigmentosa in a Four-Generation Family. (PMID:35333290)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | col6a4a | ENSDARG00000079752 |
| danio_rerio | col6a4b | ENSDARG00000112419 |
| mus_musculus | Col6a6 | ENSMUSG00000043719 |
| rattus_norvegicus | Col6a6 | ENSRNOG00000023007 |
Paralogs (12): COCH (ENSG00000100473), COL12A1 (ENSG00000111799), MATN4 (ENSG00000124159), MATN3 (ENSG00000132031), MATN2 (ENSG00000132561), MATN1 (ENSG00000162510), COL6A3 (ENSG00000163359), VWA2 (ENSG00000165816), COL6A5 (ENSG00000172752), VWA1 (ENSG00000179403), COL14A1 (ENSG00000187955), VIT (ENSG00000205221)
Protein
Protein identifiers
Collagen alpha-6(VI) chain — A6NMZ7 (reviewed: A6NMZ7)
All UniProt accessions (3): A6NMZ7, H0Y940, H0YA33
UniProt curated annotations — full annotation on UniProt →
Function. Collagen VI acts as a cell-binding protein.
Subunit / interactions. Trimers composed of three different chains: alpha-1(VI), alpha-2(VI), and alpha-3(VI) or alpha-5(VI) or alpha-6(VI).
Subcellular location. Secreted. Extracellular space. Extracellular matrix.
Post-translational modifications. Prolines at the third position of the tripeptide repeating unit (G-X-Y) are hydroxylated in some or all of the chains.
Similarity. Belongs to the type VI collagen family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| A6NMZ7-1 | 1 | yes |
| A6NMZ7-2 | 2 |
RefSeq proteins (1): NP_001096078* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002035 | VWF_A | Domain |
| IPR008160 | Collagen | Repeat |
| IPR036465 | vWFA_dom_sf | Homologous_superfamily |
| IPR050525 | ECM_Assembly_Org | Family |
Pfam: PF00092, PF01391
UniProt features (36 total): domain 9, glycosylation site 8, sequence variant 6, region of interest 4, compositionally biased region 3, splice variant 2, signal peptide 1, chain 1, short sequence motif 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-A6NMZ7-F1 | 75.61 | 0.27 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (8): 198, 275, 288, 347, 520, 930, 988, 1290
Function
Pathways and Gene Ontology
Reactome pathways
8 pathways
| ID | Pathway |
|---|---|
| R-HSA-1442490 | Collagen degradation |
| R-HSA-1650814 | Collagen biosynthesis and modifying enzymes |
| R-HSA-186797 | Signaling by PDGF |
| R-HSA-2022090 | Assembly of collagen fibrils and other multimeric structures |
| R-HSA-216083 | Integrin cell surface interactions |
| R-HSA-3000178 | ECM proteoglycans |
| R-HSA-419037 | NCAM1 interactions |
| R-HSA-8948216 | Collagen chain trimerization |
MSigDB gene sets: 77 (showing top):
GOCC_COLLAGEN_TRIMER, REACTOME_NCAM_SIGNALING_FOR_NEURITE_OUT_GROWTH, GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT, chr3q22, REACTOME_INTEGRIN_CELL_SURFACE_INTERACTIONS, GOCC_COMPLEX_OF_COLLAGEN_TRIMERS, GOMF_STRUCTURAL_MOLECULE_ACTIVITY, REACTOME_SIGNALING_BY_PDGF, GOCC_SUPRAMOLECULAR_COMPLEX, GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT_CONFERRING_TENSILE_STRENGTH, REACTOME_COLLAGEN_DEGRADATION, REACTOME_COLLAGEN_BIOSYNTHESIS_AND_MODIFYING_ENZYMES, REACTOME_ASSEMBLY_OF_COLLAGEN_FIBRILS_AND_OTHER_MULTIMERIC_STRUCTURES, REACTOME_ECM_PROTEOGLYCANS, REACTOME_COLLAGEN_CHAIN_TRIMERIZATION
GO Biological Process (2): cell adhesion (GO:0007155), extracellular matrix organization (GO:0030198)
GO Molecular Function (1): extracellular matrix structural constituent conferring tensile strength (GO:0030020)
GO Cellular Component (4): extracellular region (GO:0005576), collagen type VI trimer (GO:0005589), extracellular matrix (GO:0031012), collagen trimer (GO:0005581)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| Collagen formation | 2 |
| Extracellular matrix organization | 2 |
| Degradation of the extracellular matrix | 1 |
| Signaling by Receptor Tyrosine Kinases | 1 |
| NCAM signaling for neurite out-growth | 1 |
| Collagen biosynthesis and modifying enzymes | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular process | 1 |
| extracellular structure organization | 1 |
| external encapsulating structure organization | 1 |
| extracellular matrix structural constituent | 1 |
| cellular anatomical structure | 1 |
| collagen beaded filament | 1 |
| von-Willerbrand-factor-A-domain-rich collagen trimer | 1 |
| extracellular protein-containing complex | 1 |
| external encapsulating structure | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
1188 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| COL6A6 | P4HA3 | Q7Z4N8 | 612 |
| COL6A6 | FCN3 | O75636 | 523 |
| COL6A6 | COL6A2 | P12110 | 515 |
| COL6A6 | CCBE1 | Q6UXH8 | 512 |
| COL6A6 | CTHRC1 | Q96CG8 | 508 |
| COL6A6 | COL15A1 | P39059 | 483 |
| COL6A6 | FCN2 | Q15485 | 456 |
| COL6A6 | COLEC10 | Q9Y6Z7 | 419 |
| COL6A6 | ITGA9 | Q13797 | 403 |
| COL6A6 | HMMR | O75330 | 394 |
| COL6A6 | LAMA4 | Q16363 | 387 |
| COL6A6 | LAMC3 | Q9Y6N6 | 385 |
| COL6A6 | C1QL4 | Q86Z23 | 353 |
| COL6A6 | LAMA2 | P24043 | 353 |
| COL6A6 | ITGA8 | P53708 | 348 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| COL6A6 | ALDH1B1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| COL6A6 | SSR3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (23): ALDH1B1 (Proximity Label-MS), SSR3 (Proximity Label-MS), COL6A6 (Affinity Capture-MS), PGK1 (Cross-Linking-MS (XL-MS)), RPL27 (Cross-Linking-MS (XL-MS)), COL6A6 (Cross-Linking-MS (XL-MS)), COL6A6 (Cross-Linking-MS (XL-MS)), COL6A6 (Cross-Linking-MS (XL-MS)), EEA1 (Cross-Linking-MS (XL-MS)), NEURL4 (Cross-Linking-MS (XL-MS)), COL6A6 (Proximity Label-MS), COL6A6 (Proximity Label-MS), COL6A6 (Proximity Label-MS), COL6A6 (Proximity Label-MS), COL6A6 (Proximity Label-MS)
ESM2 similar proteins: A2AX52, A6H584, A6NMZ7, A6X935, A8TX70, E1BMV3, E7FF10, O00339, O02668, O08746, O55123, O89029, P05099, P06681, P12111, P15989, P19823, P19827, P21180, P21941, P51942, P79263, P97278, P97279, Q0IIH7, Q0V8T0, Q0V8T5, Q0V8T6, Q0V8T7, Q0VCM5, Q14624, Q21540, Q29052, Q3SYW2, Q3T052, Q5GFL6, Q61702, Q61703, Q6DCQ6, Q70UZ7
Diamond homologs: A2AX52, A6H584, A6NMZ7, A6QLN9, A8TX70, E7FF10, O00339, O08746, O42401, O75578, O89029, P05099, P05555, P11215, P12111, P15989, P20701, P20702, P34576, P51942, P61625, Q02388, Q13349, Q21281, Q21540, Q28902, Q3V0T4, Q63870, Q642A6, Q6PCB0, Q6UXI7, Q8C6K9, Q8NFW1, Q8R2Z5, Q90615, Q91145, Q923P0, Q95LI2, Q96P44, Q9P218
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| COL6A6 | up-regulates | ECM_synthesis |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 1 cancer types — PAAD.
Clinical variants and AI predictions
ClinVar
449 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 361 |
| Likely benign | 42 |
| Benign | 21 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 444617 | NM_001102608.3(COL6A6):c.3971-2A>G | Likely pathogenic |
SpliceAI
5915 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:130563616:G:GT | donor_gain | 1.0000 |
| 3:130566698:TTAG:T | acceptor_loss | 1.0000 |
| 3:130566700:A:AC | acceptor_loss | 1.0000 |
| 3:130566700:A:AG | acceptor_gain | 1.0000 |
| 3:130566701:G:GG | acceptor_gain | 1.0000 |
| 3:130566701:GGTT:G | acceptor_gain | 1.0000 |
| 3:130568045:A:AG | acceptor_gain | 1.0000 |
| 3:130568046:G:GG | acceptor_gain | 1.0000 |
| 3:130570816:A:AG | acceptor_gain | 1.0000 |
| 3:130570817:G:GG | acceptor_gain | 1.0000 |
| 3:130570817:GAAT:G | acceptor_gain | 1.0000 |
| 3:130571389:AGTAG:A | donor_loss | 1.0000 |
| 3:130571390:GTAG:G | donor_gain | 1.0000 |
| 3:130571393:GGTA:G | donor_loss | 1.0000 |
| 3:130571394:G:C | donor_loss | 1.0000 |
| 3:130571395:T:G | donor_loss | 1.0000 |
| 3:130573951:TGTA:T | acceptor_loss | 1.0000 |
| 3:130573954:A:AG | acceptor_gain | 1.0000 |
| 3:130573954:AGAT:A | acceptor_loss | 1.0000 |
| 3:130573955:G:GG | acceptor_gain | 1.0000 |
| 3:130573955:GATT:G | acceptor_gain | 1.0000 |
| 3:130573992:T:TA | acceptor_gain | 1.0000 |
| 3:130574522:AGCA:A | donor_gain | 1.0000 |
| 3:130574523:GCA:G | donor_gain | 1.0000 |
| 3:130574523:GCAG:G | donor_gain | 1.0000 |
| 3:130574524:CA:C | donor_gain | 1.0000 |
| 3:130574526:G:GG | donor_gain | 1.0000 |
| 3:130581559:A:AG | acceptor_gain | 1.0000 |
| 3:130581560:G:GA | acceptor_gain | 1.0000 |
| 3:130581560:GA:G | acceptor_gain | 1.0000 |
AlphaMissense
14932 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:130568088:A:C | S629R | 0.996 |
| 3:130568090:T:A | S629R | 0.996 |
| 3:130568090:T:G | S629R | 0.996 |
| 3:130568199:T:C | F666L | 0.995 |
| 3:130568201:C:A | F666L | 0.995 |
| 3:130568201:C:G | F666L | 0.995 |
| 3:130568317:T:C | L705P | 0.995 |
| 3:130568080:T:C | L626P | 0.994 |
| 3:130568380:T:C | L726P | 0.994 |
| 3:130568497:T:C | L765P | 0.993 |
| 3:130661832:G:C | R2009P | 0.993 |
| 3:130568085:G:C | D628H | 0.992 |
| 3:130568092:C:T | S630F | 0.992 |
| 3:130568202:A:C | S667R | 0.992 |
| 3:130568204:C:A | S667R | 0.992 |
| 3:130568204:C:G | S667R | 0.992 |
| 3:130568386:T:C | L728P | 0.992 |
| 3:130568508:A:C | S769R | 0.992 |
| 3:130568510:T:A | S769R | 0.992 |
| 3:130568510:T:G | S769R | 0.992 |
| 3:130574295:T:C | L1106P | 0.992 |
| 3:130574108:T:C | F1044L | 0.990 |
| 3:130574110:T:A | F1044L | 0.990 |
| 3:130574110:T:G | F1044L | 0.990 |
| 3:130568086:A:T | D628V | 0.989 |
| 3:130568091:T:C | S630P | 0.989 |
| 3:130568440:G:C | R746P | 0.989 |
| 3:130571283:T:C | L956P | 0.989 |
| 3:130662206:A:C | S2134R | 0.989 |
| 3:130662208:C:A | S2134R | 0.989 |
dbSNP variants (sampled 300 via entrez): RS1000032636 (3:130548094 A>G), RS1000100593 (3:130515376 A>G), RS1000128798 (3:130657127 C>T), RS1000130027 (3:130656185 G>C), RS1000134638 (3:130546101 CA>C), RS1000180246 (3:130596265 T>C), RS1000233735 (3:130612697 G>A), RS1000239842 (3:130600768 C>T), RS1000256921 (3:130550839 A>G), RS1000258584 (3:130594815 A>C), RS1000264516 (3:130551599 A>G), RS1000306346 (3:130558064 T>C), RS1000375133 (3:130595141 C>T), RS1000384604 (3:130515065 C>T), RS1000397091 (3:130655790 T>G)
Disease associations
OMIM: gene MIM:616613 | disease phenotypes: MIM:117000
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| myopathy | Limited | Autosomal recessive |
| congenital myopathy | Limited | Autosomal recessive |
Mondo (2): congenital myopathy (MONDO:0019952), myopathy (MONDO:0005336)
Orphanet (1): Congenital myopathy (Orphanet:97245)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004748_85 | Lung cancer | 8.000000e-06 |
| GCST009090_6 | Thoracic aortic calcification levels | 7.000000e-07 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010273 | thoracic aortic calcification measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2364188 (PROTEIN COMPLEX GROUP)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
14 total (human), top 14 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, decreases methylation | 6 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| belinostat | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| Resveratrol | decreases expression, affects cotreatment | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Nickel | increases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Smoke | increases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
| S-Nitrosoglutathione | increases expression | 1 |
Clinical trials (associated diseases)
57 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00120055 | PHASE4 | COMPLETED | Association Between Systemic Exposure of Atorvastatin and Metabolites and Atorvastatin-induced Myotoxicity |
| NCT03633565 | PHASE4 | UNKNOWN | Comparative Study of Strategies for Management of Duchenne Myopathy (DM) |
| NCT01225614 | PHASE3 | UNKNOWN | Efficacy and Tolerance of Early Launching of Nocturnal Non Invasive |
| NCT00278564 | PHASE1 | TERMINATED | Stem Cell Transplantation in Idiopathic Inflammatory Myopathy Diseases |
| NCT01642056 | PHASE1/PHASE2 | COMPLETED | EPI-743 for Metabolism or Mitochondrial Disorders |
| NCT02124070 | PHASE1/PHASE2 | WITHDRAWN | Therapeutic Effect of Recombinant Human Growth Hormone (rhGH) on the Myopathy of Cystinosis |
| NCT00549029 | Not specified | UNKNOWN | The Association of Genetic Polymorphisms With Statin-Induced Myopathy. |
| NCT00767130 | Not specified | UNKNOWN | DNA Diagnostic System for Statin Safety and Efficacy |
| NCT00922428 | Not specified | COMPLETED | PASCOE-Agil HOM-Injektopas in the Treatment of Rheumatic Disorders |
| NCT00937001 | Not specified | ACTIVE_NOT_RECRUITING | Critical Illness Myopathy as a Cause of Debilitating ICU-Acquired Weakness |
| NCT00990834 | Not specified | WITHDRAWN | Muscle Characteristics Associated With Statin Therapy |
| NCT01022450 | Not specified | UNKNOWN | Study of the Causes of the Breakdown of Muscle Fibers in Hospitalized Patients |
| NCT01040650 | Not specified | TERMINATED | Metabolic Features of Post-Myopathy Patients Associated With Statin Treatment |
| NCT01047163 | Not specified | COMPLETED | Maintenance of Muscle Mass in Older People: the Negative Impact of Statin Therapy |
| NCT01270269 | Not specified | COMPLETED | ACT-ICU Study: Activity and Cognitive Therapy in the Intensive Care Unit |
| NCT01353430 | Not specified | RECRUITING | Characterization of Inclusion Body Myopathy Associated With Paget’s Disease of Bone and Frontotemporal Dementia (IBMPFD) |
| NCT01395563 | Not specified | WITHDRAWN | Strength Training on Pancreatic Cancer |
| NCT01530841 | Not specified | COMPLETED | Efficacy and Tolerance of AVAPS Mode in Myotonic Dystrophy |
| NCT01547767 | Not specified | COMPLETED | Investigations Into ISCU Myopathy or Iron Sulfur Scaffold U Protein Myopathy |
| NCT01702987 | Not specified | COMPLETED | Evaluation of Ubiquinol on Mitochondrial Oxidative Capacity in Statin Patients Using 31PMRS |
| NCT01790178 | Not specified | COMPLETED | Ultrasound in Muscle Biopsy |
| NCT02011282 | Not specified | COMPLETED | Electro-Neuro-Muscular Stimulation in ICU |
| NCT02104921 | Not specified | COMPLETED | Innovative Ultrasound Technology in Neuromuscular Disease |
| NCT02118805 | Not specified | COMPLETED | Innovative Measures of Speech and Swallowing Dysfunction in Neurological Disorders |
| NCT02235220 | Not specified | UNKNOWN | Reduction of Masticatory Muscle Activity by Restoring Canine Guidance |
| NCT02247895 | Not specified | TERMINATED | Treatment of Muscle Weakness in Critically Ill Patients |
| NCT02315339 | Not specified | TERMINATED | European Home Mechanical Ventilation Registry |
| NCT02442986 | Not specified | COMPLETED | Neurological Outcome in Surgical and Non-surgical Septic Patients |
| NCT02706314 | Not specified | COMPLETED | Impact of Human Blood Serum From Critically Ill Patients on Human Colon Neuronal Networks. |
| NCT02765828 | Not specified | COMPLETED | Identification of Tongue Involvement in Late-Onset Pompe Disease |
| NCT03042286 | Not specified | UNKNOWN | SAPhIRE Statin Adverse Drug Reaction |
| NCT03141749 | Not specified | COMPLETED | Venous Thromboembolism in DM1 |
| NCT03660969 | Not specified | ACTIVE_NOT_RECRUITING | Reliability of Cardiac Troponins for the Diagnosis of Myocardial Infarction in the Presence of Skeletal Muscle Disease |
| NCT03749538 | Not specified | RECRUITING | Acute Transcranial Direct Current Stimulation in Patients With Systemic Autoimmune Myopathies |
| NCT03751644 | Not specified | COMPLETED | Peripherical Neuromuscular Electrical Stimulation in Systemic Autoimmune Myopathies |
| NCT03998540 | Not specified | UNKNOWN | Improvement of DIAgnostic and Phenotype-genotype Correlation Studies in Patients With MYOpathy Suspected of TITinopathy |
| NCT04678635 | Not specified | RECRUITING | Chronic Transcranial Direct Current Stimulation in Patients With Systemic Autoimmune Myopathies |
| NCT04881214 | Not specified | UNKNOWN | COVID-19 Pneumonia: Pulmonary Physiology, Health-related Quality of Life and Benefit of a Rehabilitation Program |
| NCT04941079 | Not specified | UNKNOWN | Safety and Efficacy of Inactivated SARS-CoV-2 Vaccine in Immune-related Myopathy (Myasthenia Gravis and Inflammatory Myopathy) Patients :a Prospective Observational Study |
| NCT05599568 | Not specified | RECRUITING | Repeated Bout Effect i Neuromuscular Diseases |
Related Atlas pages
- Associated diseases: myopathy, congenital myopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital myopathy, myopathy