COMP
gene geneOn this page
Also known as MEDTHBS5TSP5TSP-5
Summary
COMP (cartilage oligomeric matrix protein, HGNC:2227) is a protein-coding gene on chromosome 19p13.11, encoding Cartilage oligomeric matrix protein (P49747). Plays a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as the collagens and fibronectin.
The protein encoded by this gene is a noncollagenous extracellular matrix (ECM) protein. It consists of five identical glycoprotein subunits, each with EGF-like and calcium-binding (thrombospondin-like) domains. Oligomerization results from formation of a five-stranded coiled coil and disulfides. Binding to other ECM proteins such as collagen appears to depend on divalent cations. Contraction or expansion of a 5 aa aspartate repeat and other mutations can cause pseudochondroplasia (PSACH) and multiple epiphyseal dysplasia (MED).
Source: NCBI Gene 1311 — RefSeq curated summary.
At a glance
- Gene–disease (curated): COMP-related skeletal dysplasia (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 3
- Clinical variants (ClinVar): 927 total — 54 pathogenic, 88 likely-pathogenic (top 3% of genes corpus-wide)
- GTEx eGene: eQTL in 14 tissues, sQTL in 1 (q < 0.05)
- Phenotypes (HPO): 93
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 1.07 (unconstrained)
- MANE Select transcript:
NM_000095
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2227 |
| Approved symbol | COMP |
| Name | cartilage oligomeric matrix protein |
| Location | 19p13.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MED, THBS5, TSP5, TSP-5 |
| Ensembl gene | ENSG00000105664 |
| Ensembl biotype | protein_coding |
| OMIM | 600310 |
| Entrez | 1311 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 5 protein_coding, 2 nonsense_mediated_decay, 1 retained_intron
MANE Select: ENST00000222271
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2, TSL 2: 2
ENST00000222271, ENST00000425807, ENST00000542601, ENST00000612179, ENST00000944187, ENST00000944188, ENST00001037220, ENST00001123668
RefSeq mRNA: 1 — MANE Select: NM_000095
NM_000095
CCDS: CCDS12385
Canonical transcript exons
ENST00000222271 — 19 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000690352 | 18790562 | 18790613 |
| ENSE00000690354 | 18790850 | 18790935 |
| ENSE00002410667 | 18791191 | 18791305 |
| ENSE00002990811 | 18789160 | 18789297 |
| ENSE00002994550 | 18786532 | 18786650 |
| ENSE00003077336 | 18788592 | 18788750 |
| ENSE00003091449 | 18788839 | 18788913 |
| ENSE00003103541 | 18789942 | 18790114 |
| ENSE00003111278 | 18787491 | 18787650 |
| ENSE00003116721 | 18788212 | 18788319 |
| ENSE00003128675 | 18788410 | 18788514 |
| ENSE00003143164 | 18782773 | 18782961 |
| ENSE00003143260 | 18785498 | 18785546 |
| ENSE00003146191 | 18785673 | 18785851 |
| ENSE00003159325 | 18784191 | 18784363 |
| ENSE00003190692 | 18783054 | 18783193 |
| ENSE00003192317 | 18785965 | 18786146 |
| ENSE00003218232 | 18784896 | 18785092 |
| ENSE00003631787 | 18786239 | 18786291 |
Expression profiles
Bgee: expression breadth ubiquitous, 195 present calls, max score 99.87.
FANTOM5 (CAGE): breadth broad, TPM avg 50.3105 / max 11530.3989, expressed in 293 samples.
Highest expression (Bgee): tibia, cartilage tissue, calcaneal tendon, tendon of biceps brachii, synovial joint.
Genetic regulation across tissues (GTEx eQTL / sQTL)
COMP is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 14 tissues and its splicing (sQTL) in 1 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
15 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Brain Cerebellar Hemisphere | eqtl | 1.5e-12 | +0.72 | 19:18734866:C:G |
| Brain Cerebellum | eqtl | 4.2e-12 | +0.74 | 19:18770213:T:C |
| Thyroid | eqtl | 1.4e-04 | -0.24 | 19:18794384:C:T |
| Skin Sun Exposed Lower leg | eqtl | 4.2e-04 | +0.16 | 19:18801332:CA:C |
| Artery Tibial | eqtl | 4.3e-04 | +0.24 | 19:18800572:C:T |
| Lung | eqtl | 4.9e-04 | -0.26 | 19:18794384:C:T |
| Pancreas | eqtl | 1.6e-03 | -0.29 | 19:18795844:G:T |
| Testis | sqtl | 2.5e-03 | +0.46 | 19:18762107:A:G |
| Breast Mammary Tissue | eqtl | 1.2e-02 | -0.19 | 19:18795844:G:T |
| Adipose Visceral Omentum | eqtl | 2.0e-02 | -0.77 | 19:18715747:G:T |
| Colon Sigmoid | eqtl | 2.6e-02 | +0.44 | 19:18758177:C:T |
| Brain Caudate basal ganglia | eqtl | 3.8e-02 | -0.32 | 19:19461299:T:G |
| Nerve Tibial | eqtl | 4.0e-02 | +0.53 | 19:18463444:C:T |
| Adipose Subcutaneous | eqtl | 4.1e-02 | +0.15 | 19:18801332:CA:C |
| Stomach | eqtl | 4.4e-02 | -1.01 | 19:19766467:T:G |
FANTOM5 promoters
6 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 180094 | 49.7492 | 293 |
| 180067 | 0.2615 | 56 |
| 180066 | 0.1428 | 41 |
| 180064 | 0.0977 | 31 |
| 180065 | 0.0403 | 20 |
| 180093 | 0.0190 | 8 |
Top tissues by expression
showing 100 of 280 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| tibia | UBERON:0000979 | 99.87 | gold quality |
| cartilage tissue | UBERON:0002418 | 99.65 | gold quality |
| calcaneal tendon | UBERON:0003701 | 99.59 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 99.46 | gold quality |
| synovial joint | UBERON:0002217 | 99.08 | gold quality |
| tendon | UBERON:0000043 | 98.44 | gold quality |
| popliteal artery | UBERON:0002250 | 98.37 | gold quality |
| tibial artery | UBERON:0007610 | 98.36 | gold quality |
| saphenous vein | UBERON:0007318 | 98.22 | gold quality |
| aorta | UBERON:0000947 | 95.87 | gold quality |
| urethra | UBERON:0000057 | 94.74 | gold quality |
| ascending aorta | UBERON:0001496 | 92.97 | gold quality |
| skin of leg | UBERON:0001511 | 92.93 | gold quality |
| thoracic aorta | UBERON:0001515 | 92.91 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 92.29 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 92.16 | gold quality |
| pericardium | UBERON:0002407 | 90.34 | gold quality |
| left coronary artery | UBERON:0001626 | 89.76 | gold quality |
| right coronary artery | UBERON:0001625 | 89.74 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 89.24 | gold quality |
| coronary artery | UBERON:0001621 | 88.73 | gold quality |
| tibial nerve | UBERON:0001323 | 87.95 | gold quality |
| zone of skin | UBERON:0000014 | 87.08 | gold quality |
| skin of abdomen | UBERON:0001416 | 85.76 | gold quality |
| right atrium auricular region | UBERON:0006631 | 83.77 | gold quality |
| gall bladder | UBERON:0002110 | 83.54 | gold quality |
| hair follicle | UBERON:0002073 | 83.10 | gold quality |
| periodontal ligament | UBERON:0008266 | 82.79 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 81.67 | gold quality |
| cardiac atrium | UBERON:0002081 | 81.43 | gold quality |
| blood vessel layer | UBERON:0004797 | 81.28 | gold quality |
| right testis | UBERON:0004534 | 80.82 | gold quality |
| minor salivary gland | UBERON:0001830 | 79.69 | gold quality |
| left testis | UBERON:0004533 | 79.59 | gold quality |
| mouth mucosa | UBERON:0003729 | 78.80 | gold quality |
| amniotic fluid | UBERON:0000173 | 77.91 | gold quality |
| penis | UBERON:0000989 | 77.87 | gold quality |
| visceral pleura | UBERON:0002401 | 77.86 | gold quality |
| testis | UBERON:0000473 | 77.80 | gold quality |
| seminal vesicle | UBERON:0000998 | 77.19 | gold quality |
| vagina | UBERON:0000996 | 77.11 | gold quality |
| triceps brachii | UBERON:0001509 | 76.11 | gold quality |
| gingiva | UBERON:0001828 | 75.74 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 75.69 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 75.56 | gold quality |
| omental fat pad | UBERON:0010414 | 75.42 | gold quality |
| peritoneum | UBERON:0002358 | 75.37 | gold quality |
| paraflocculus | UBERON:0005351 | 75.36 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 75.13 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 75.03 | gold quality |
| connective tissue | UBERON:0002384 | 74.92 | gold quality |
| frontal pole | UBERON:0002795 | 74.84 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 74.56 | gold quality |
| esophagus mucosa | UBERON:0002469 | 74.27 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 74.25 | gold quality |
| adipose tissue | UBERON:0001013 | 73.91 | gold quality |
| right lung | UBERON:0002167 | 73.67 | gold quality |
| trachea | UBERON:0003126 | 73.67 | gold quality |
| ectocervix | UBERON:0012249 | 73.40 | gold quality |
| corpus epididymis | UBERON:0004359 | 72.73 | gold quality |
| caput epididymis | UBERON:0004358 | 72.05 | gold quality |
| mammalian vulva | UBERON:0000997 | 71.87 | gold quality |
| gingival epithelium | UBERON:0001949 | 71.62 | silver quality |
| vena cava | UBERON:0004087 | 71.56 | silver quality |
| smooth muscle tissue | UBERON:0001135 | 71.45 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 70.84 | gold quality |
| heart | UBERON:0000948 | 70.71 | gold quality |
| nipple | UBERON:0002030 | 70.51 | gold quality |
| upper arm skin | UBERON:0004263 | 70.42 | silver quality |
| gastrocnemius | UBERON:0001388 | 70.09 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 70.04 | gold quality |
| skin of hip | UBERON:0001554 | 69.78 | gold quality |
| tibialis anterior | UBERON:0001385 | 69.74 | silver quality |
| upper lobe of lung | UBERON:0008948 | 69.73 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 69.64 | gold quality |
| cerebellar cortex | UBERON:0002129 | 69.39 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 69.03 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 68.88 | gold quality |
| gluteal muscle | UBERON:0002000 | 68.75 | gold quality |
| prostate gland | UBERON:0002367 | 68.13 | gold quality |
| cerebellum | UBERON:0002037 | 67.80 | gold quality |
| thyroid gland | UBERON:0002046 | 67.48 | gold quality |
| muscle of leg | UBERON:0001383 | 67.15 | gold quality |
| apex of heart | UBERON:0002098 | 66.54 | gold quality |
| esophagus | UBERON:0001043 | 66.45 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 66.36 | gold quality |
| body of tongue | UBERON:0011876 | 65.81 | gold quality |
| superficial temporal artery | UBERON:0001614 | 65.69 | gold quality |
| muscle organ | UBERON:0001630 | 65.26 | gold quality |
| endometrium epithelium | UBERON:0004811 | 64.90 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 64.67 | gold quality |
| bone element | UBERON:0001474 | 64.49 | gold quality |
| tongue | UBERON:0001723 | 64.30 | silver quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 64.27 | gold quality |
| placenta | UBERON:0001987 | 64.24 | gold quality |
| stromal cell of endometrium | CL:0002255 | 64.13 | gold quality |
| myometrium | UBERON:0001296 | 64.01 | gold quality |
| heart left ventricle | UBERON:0002084 | 63.64 | gold quality |
| cardiac ventricle | UBERON:0002082 | 63.28 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 63.25 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
HPA expression
RNA tissue specificity: Tissue enriched
showing 60 of 63 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM |
|---|---|---|
| Vagina | tissue | 22.1 |
| Gallbladder | tissue | 15.1 |
| Smooth muscle | tissue | 11.3 |
| Heart muscle | tissue | 8.2 |
| Placenta | tissue | 7.7 |
| Epididymis | tissue | 7.2 |
| Seminal vesicle | tissue | 6.3 |
| Urinary bladder | tissue | 6.1 |
| Adipose tissue | tissue | 5.8 |
| Testis | tissue | 5.7 |
| Prostate | tissue | 3.9 |
| Skin 1 | tissue | 3.5 |
| Lymph node | tissue | 3.4 |
| Esophagus | tissue | 2.5 |
| Parathyroid gland | tissue | 2.1 |
| Endometrium 1 | tissue | 1.8 |
| Lung | tissue | 1.7 |
| Salivary gland | tissue | 1.6 |
| Cerebellum | tissue | 1.1 |
| Appendix | tissue | 1.1 |
| Cervix | tissue | 1.0 |
| Breast | tissue | 0.9 |
| Olfactory bulb | tissue | 0.9 |
| Superior colliculi | tissue | 0.7 |
| Pancreas | tissue | 0.6 |
| Tongue | tissue | 0.5 |
| Spinal cord | tissue | 0.5 |
| Hippocampal formation | tissue | 0.5 |
| Entorhinal cortex | tissue | 0.5 |
| Pituitary gland | tissue | 0.3 |
| Cerebral cortex | tissue | 0.3 |
| Substantia nigra | tissue | 0.3 |
| Thyroid gland | tissue | 0.3 |
| Tonsil | tissue | 0.3 |
| Somatosensory cortex | tissue | 0.3 |
| Temporal cortex | tissue | 0.3 |
| Prefrontal cortex | tissue | 0.2 |
| Skeletal muscle | tissue | 0.2 |
| Colon | tissue | 0.2 |
| Motor cortex | tissue | 0.2 |
| Frontal cortex | tissue | 0.2 |
| Medulla oblongata | tissue | 0.2 |
| Kidney | tissue | 0.2 |
| Adrenal gland | tissue | 0.2 |
| Retrosplenial and cingulate cortex | tissue | 0.2 |
| Retrosplenial cortex | tissue | 0.2 |
| Occipital cortex | tissue | 0.2 |
| Insular cortex | tissue | 0.2 |
| Stomach 1 | tissue | 0.1 |
| Basal ganglia | tissue | 0.1 |
| Amygdala | tissue | 0.1 |
| Choroid plexus | tissue | 0.1 |
| Midbrain | tissue | 0.1 |
| Thalamus | tissue | 0.1 |
| Hypothalamus | tissue | 0.1 |
| Liver | tissue | 0.1 |
| Locus coeruleus | tissue | 0.1 |
| Thymus | tissue | 0.1 |
| Ventral forebrain | tissue | 0.1 |
| Periaqueductal gray | tissue | 0.1 |
Brain sub-regions (HPA Brain Atlas): detected in 66; highest nTPM — Blood vessel (333.9), Flocculonodular lobe (2.8), Vermis (1.9), Cerebellar cortex (1.7), Cervical spinal cord, ventral horn (0.8).
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CREBRF, GLI3, SON, SOX17, SOX5, SOX6, SOX9, SP1, TBXT, TCF3, ZBTB7A
miRNA regulators (miRDB)
Targeting COMP by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
3 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-216B-3P | 98.55 | 67.19 | 1223 |
| HSA-MIR-6852-3P | 98.54 | 67.60 | 1468 |
| HSA-MIR-3909 | 97.55 | 66.78 | 887 |
Functional genomics
gnomAD constraint: pLI 1.64e-24, LOEUF 1.07, missense Z 1.51 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD RMC): no regional variation along ENST00000222271 — one region, missense o/e 0.84.
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Disease-causing mutations in cartilage oligomeric matrix protein cause an unstructured Ca2+ binding domain (PMID:11782471)
- Mutations effect the matrix around chondrocytes, causing osteochondrodysplasias (PMID:11891674)
- Matrix-matrix interaction of cartilage oligomeric matrix protein and fibronectin. (PMID:12225811)
- COMP gene mutations have been identified in patients with pseudochondrodysplasia and multiple epiphyseal dysplasia. (PMID:12768438)
- Mutations of the cartilage oligomeric matrix protein gene is associated with pseudoachondroplasia (PMID:12792737)
- Data show that mutated cartilage oligomeric matrix protein accumulated in the rough endoplasmic reticulum, and the affected cells were more likely to undergo apoptosis. (PMID:12819015)
- COMP expression is up-regulated by both GH and IGF-I in primary cultured human chondrocytes (PMID:15472220)
- COMP, type IX collagen and MATN3 play important roles in matrix assembly (PMID:15694129)
- COMP secretion is affected by the signal peptide (PMID:15749701)
- Mapping of all known COMP C-terminal domain (CTD) mutations on a three-dimensional model shows that the CTD mutations cluster in two distinct regions. (PMID:15880723)
- COMP/TSP5 can mediate chondrocyte attachment through interactions with integrins (PMID:16051604)
- expression pattern of both promoters recapitulates endogenous cartilage COMP expression in mice (PMID:16214313)
- COMP encodes a noncollagenous extracellular matrix protein in various musculoskeletal tissues {review} (PMID:16340129)
- COMP is overexpressed in scleroderma skin and cultured fibroblasts possibly due to autocrine TGFbeta stimulation, and COMP overexpression is sufficient to stimulate excess matrix deposition (PMID:16520029)
- COMP might be involved in human limb development, is upregulated in osteoarthritis (OA), and could play a role in the pathogenesis of OA as a factor secreted by chondrocytes to ameliorate the matrix breakdown. (PMID:16542502)
- This study showed that heritable factors influence serum levels of the cartilage matrix biomarker cartilage oligomeric matrix protein (COMP) in osteoarthritis. (PMID:16802351)
- May play an important role in an attempted repair of either traumatized or degenerated cartilage. (PMID:17033713)
- The results demonstrate that different COMP mutations in the T3 repeat domain have variable effects on intracellular transport, which correlate with clinical severity (PMID:17570134)
- DNA sequencing-based genetic diagnosis of pseudoachondroplasia revealed a heterozygous mutation for the nucleotide change 1532A>G in exon 14 of the COMP gene, resulting in a substitution of amino acid 511 from aspartic acid to glycine. (PMID:17579668)
- COMP/TSP5 may function to support matrix interactions with aggrecan in cartilage extracellular matrix (PMID:17588949)
- the authors consider serum COMP levels in different diseases…and discuss…whether COMP is able to predict a rapid and sustained clinical response to anti-TNF-alpha drugs. (PMID:17894003)
- Data show COMP protects cells against death by elevating members of the IAP family of survival proteins. (PMID:17993464)
- COMP mutations are associated with skeletal dysplasias (PMID:18193163)
- Recent studies highlighted in this review have identified molecular functions of cartilage oligomeric matrix protein that may contribute to its role in skeletal disease. (PMID:18855621)
- there is an inverse relationship between hypermobility and hand and knee osteoarthritis, and that hypermobility is associated with lower serum COMP levels (PMID:19035482)
- COMP, CXCL9 and KRT19 play an important role in the pathopoiesis of oral submucosal fibrosis. (PMID:19087608)
- Serum COMP was increased 1.6-fold at 10 km during a marathon race and declined to the pre-race level after 2 days recovery. (PMID:19125286)
- The crystal packing reveals an exposed potential metal-ion-dependent adhesion site on one edge of the beta-sandwich that is common to all TSPs and may serve as a binding site for collagens and other ligands. (PMID:19276170)
- Elevation of COMP may reflect joint damage that is dependent on the synovial inflammatory process in early-stage rheumatoid arthritis. (PMID:19447929)
- We found reduced COMP levels in children with juvenile idiopathic arthritis compared with healthy children (PMID:19605679)
- The structure of the mutant COMP growth plate recapitulated the findings of human pseudoachondroplasia growth plate morphology. (PMID:19762713)
- Serum COMP levels correlated with total-body joint disease severity as determined by bone scintigraphy, supporting the idea that whole-body bone scintigraphy quantifies the total-body burden of osteoarthritis for systemic biomarker validation. (PMID:19877068)
- Data show that cartilage oligomeric matrix protein (COMP) promotes cell attachment via independent mechanisms involving cell surface CD47 and alphaVbeta3 integrin and that cell attachment to COMP induces formation of fascin-stabilized actin microspikes. (PMID:20033473)
- Elevation of COMP serum concentration seems to depend on the loading mode of the physical activity and to reflect the extrusion of COMP fragments from the impact loaded articular cartilage or synovial fluid. (PMID:20544356)
- Mutations in COMP gene are responsible for the pseudoachondroplasia. Serum COMP concentration may be suggested as an additional diagnostic marker to aid clinical findings in suspected cases of pseudoachondroplasia. (PMID:20819661)
- Data revealed a strong induction of several genes encoding components of the extracellular matrix, such as collagens, COMP, IGFBP5 and biglycan. (PMID:21029365)
- We report an 81% mutation detection rate for pseudoachondroplasia, of which COMP+Col9A3 mutations were more prevalent (61%) than COMP mutations alone (30%). (PMID:21042783)
- The results suggest that uCTX-I, uCTX-II and sCOMP could identify patients with focal cartilage lesions from an early stage of osteoarthritis of the knee. (PMID:21221577)
- a c. 1352_1353ins TGTCCCTGG is a novel mutation in COMP responsible for severe familial pseudoachondroplasia (PMID:21599986)
- In vivo exercise interventions differentially regulate serum COMP concentrations and knee cartilage deformations. The relation between changes in COMP and in cartilage volume seems to depend on both mechanical and biochemical factors. (PMID:21616158)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | comp | ENSDARG00000098431 |
| mus_musculus | Comp | ENSMUSG00000031849 |
| rattus_norvegicus | Comp | ENSRNOG00000048472 |
| drosophila_melanogaster | Tsp | FBGN0031850 |
Paralogs (5): ISM1 (ENSG00000101230), THBS4 (ENSG00000113296), THBS1 (ENSG00000137801), THBS3 (ENSG00000169231), THBS2 (ENSG00000186340)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:88469) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 23 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| abnormal chondrocyte morphology | 2 |
| decreased body weight | 2 |
| disproportionate dwarf | 2 |
| short tibia | 2 |
| abnormal long bone epiphyseal plate proliferative zone | 2 |
| abnormal pelvic girdle bone morphology | 2 |
| abnormal hip joint morphology | 2 |
| abnormal cartilage morphology | 1 |
| short limbs | 1 |
| myopathy | 1 |
| abnormal long bone epiphyseal plate morphology | 1 |
| decreased tendon stiffness | 1 |
| short femur | 1 |
| osteoarthritis | 1 |
| increased muscle fatigability | 1 |
| abnormal ischium morphology | 1 |
| abnormal vascular wound healing | 1 |
| abnormal tendon morphology | 1 |
| centrally nucleated skeletal muscle fibers | 1 |
| abnormal chondrocyte physiology | 1 |
| decreased grip strength | 1 |
| decreased chondrocyte proliferation | 1 |
| increased chondrocyte apoptosis | 1 |
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Macaca fascicularis | Q7YQD7 | 98.0% | Diamond |
| Bos taurus | Q28178 | 97.1% | Diamond |
| Xenopus laevis | P35448 | 80.9% | Diamond |
| Gallus gallus | P35440 | 80.4% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| COPE | protein-coding | 11316 |
| GDF1 | protein-coding | 2657 |
| DDX49 | protein-coding | 54555 |
| UPF1 | protein-coding | 5976 |
| CRTC1 | protein-coding | 23373 |
| TMEM59L | protein-coding | 25789 |
| KLHL26 | protein-coding | 55295 |
| CERS1 | protein-coding | 10715 |
Protein
Protein identifiers
Cartilage oligomeric matrix protein — P49747 (reviewed: P49747)
Alternative names: Thrombospondin-5
All UniProt accessions (2): G3XAP6, P49747
UniProt curated annotations — full annotation on UniProt →
Function. Plays a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as the collagens and fibronectin. Can mediate the interaction of chondrocytes with the cartilage extracellular matrix through interaction with cell surface integrin receptors. Could play a role in the pathogenesis of osteoarthritis. Potent suppressor of apoptosis in both primary chondrocytes and transformed cells. Suppresses apoptosis by blocking the activation of caspase-3 and by inducing the IAP family of survival proteins (BIRC3, BIRC2, BIRC5 and XIAP). Essential for maintaining a vascular smooth muscle cells (VSMCs) contractile/differentiated phenotype under physiological and pathological stimuli. Maintains this phenotype of VSMCs by interacting with ITGA7.
Subunit / interactions. Pentamer; disulfide-linked. Exists in a more compact conformation in the presence of calcium and shows a more extended conformation in the absence of calcium. Interacts with ITGB3, ITGA5 and FN1. Binding to FN1 requires the presence of divalent cations (Ca(2+), Mg(2+) or Mn(2+)). The greatest amount of binding is seen in the presence of Mn(2+). Interacts with MATN1, MATN3, MATN4 and ACAN. Binds heparin, heparan sulfate and chondroitin sulfate. EDTA dimishes significantly its binding to ACAN and abolishes its binding to MATN3, MATN4 and chondroitin sulfate. Interacts with collagen I, II and IX, and interaction with these collagens is dependent on the presence of zinc ions. Interacts with ADAMTS12. Interacts with ITGA7.
Subcellular location. Secreted. Extracellular space. Extracellular matrix.
Tissue specificity. Abundantly expressed in the chondrocyte extracellular matrix, and is also found in bone, tendon, ligament and synovium and blood vessels. Increased amounts are produced during late stages of osteoarthritis in the area adjacent to the main defect.
Post-translational modifications. Proteolytically cleaved by metalloproteases ADAMTS4 and ADAMTS1 with ADAMTS4 showing more potent activity.
Disease relevance. Multiple epiphyseal dysplasia 1 (EDM1) [MIM:132400] A generalized skeletal dysplasia associated with significant morbidity. Joint pain, joint deformity, waddling gait, and short stature are the main clinical signs and symptoms. Radiological examination of the skeleton shows delayed, irregular mineralization of the epiphyseal ossification centers and of the centers of the carpal and tarsal bones. Multiple epiphyseal dysplasia is broadly categorized into the more severe Fairbank and the milder Ribbing types. The Fairbank type is characterized by shortness of stature, short and stubby fingers, small epiphyses in several joints, including the knee, ankle, hand, and hip. The Ribbing type is confined predominantly to the hip joints and is characterized by hands that are normal and stature that is normal or near-normal. The disease is caused by variants affecting the gene represented in this entry. Pseudoachondroplasia (PSACH) [MIM:177170] A skeletal dysplasia usually manifesting in the second year of life and characterized by moderate to severe disproportionate short stature, deformity of the lower limbs, brachydactyly, ligamentous laxity, and degenerative joint disease. The disease is caused by variants affecting the gene represented in this entry. Carpal tunnel syndrome 2 (CTS2) [MIM:619161] An autosomal dominant form of carpal tunnel syndrome, a condition characterized by entrapment of the median nerve within the carpal tunnel. Symptoms include burning pain and paresthesias involving the ventral surface of the hand and fingers which may radiate proximally. Impairment of sensation in the distribution of the median nerve and thenar muscle atrophy may occur. This condition may be associated with repetitive occupational trauma, wrist injuries, amyloid neuropathies, rheumatoid arthritis. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 11-14 calcium ions per subunit.
Domain organisation. The cell attachment motif mediates the attachment to chondrocytes. It mediates the induction of both the IAP family of survival proteins and the antiapoptotic response. The TSP C-terminal domain mediates interaction with FN1 and ACAN. Each of the eight TSP type-3 repeats binds two calcium ions. The TSP C-terminal domain binds three calcium ions.
Similarity. Belongs to the thrombospondin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P49747-1 | 1 | yes |
| P49747-2 | 2 |
RefSeq proteins (1): NP_000086* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000742 | EGF | Domain |
| IPR001881 | EGF-like_Ca-bd_dom | Domain |
| IPR003367 | Thrombospondin_3-like_rpt | Repeat |
| IPR008859 | Thrombospondin_C | Domain |
| IPR009030 | Growth_fac_rcpt_cys_sf | Homologous_superfamily |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR017897 | Thrombospondin_3_rpt | Repeat |
| IPR018097 | EGF_Ca-bd_CS | Conserved_site |
| IPR024665 | TSP/COMP_CC | Domain |
| IPR028974 | TSP_type-3_rpt | Homologous_superfamily |
| IPR039081 | TSP-5_CC | Domain |
| IPR046970 | TSP/COMP_CC_sf | Homologous_superfamily |
| IPR049883 | NOTCH1_EGF-like | Domain |
Pfam: PF02412, PF05735, PF07645, PF11598
UniProt features (184 total): sequence variant 81, strand 34, disulfide bond 23, helix 12, repeat 8, turn 6, domain 5, region of interest 3, compositionally biased region 3, sequence conflict 2, glycosylation site 2, signal peptide 1, chain 1, short sequence motif 1, site 1, splice variant 1
Structure
Experimental structures (PDB)
1 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 3FBY | The crystal structure of the signature domain of cartilage oligomeric matrix protein. | X-RAY DIFFRACTION | 3.15 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P49747-F1 | 88.60 | 0.67 |
Human Protein Atlas
Protein class: Predicted secreted proteins, Predicted intracellular proteins, Plasma proteins, Disease related genes, Human disease related genes, Congenital malformations, Congenital malformations of the musculoskeletal system
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): golgi apparatus
Antibody reliability (HPA): IF approved
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1)
| Position | Role |
|---|---|
| 77–78 | cleavage; by adamts4 |
Disulfide bonds (23)
| Type | Positions |
|---|---|
| Interchain | 69, 72 |
| Disulfide bond | 91–102, 96–111, 114–125, 131–142, 136–151, 154–178, 184–197, 191–206, 209–221, 229–243, 237–253, 255–266, 282–287, 292–312, 328–348, 351–371, 387–407, 410–430, 448–468, 484–504, 520–741 |
Glycosylation sites (2)
| Type | Positions |
|---|---|
| N-linked (glcnac…) asparagine | 121, 742 |
Function
Pathways and Gene Ontology
Reactome pathways
2 curated (TAS) of 3; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
3 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-3000178 | ECM proteoglycans | curated |
| R-HSA-216083 | Integrin cell surface interactions | curated |
| R-HSA-1474244 | Extracellular matrix organization | — |
MSigDB gene sets: 388 (showing top):
TURASHVILI_BREAST_LOBULAR_CARCINOMA_VS_DUCTAL_NORMAL_UP, BENPORATH_ES_WITH_H3K27ME3, GOBP_COLLAGEN_FIBRIL_ORGANIZATION, GOBP_CARTILAGE_DEVELOPMENT, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, GOBP_SMOOTH_MUSCLE_CELL_DIFFERENTIATION, GOBP_PLATELET_ACTIVATION, MODULE_45, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GOBP_GROWTH, SMID_BREAST_CANCER_RELAPSE_IN_LUNG_DN, GOBP_ARTERY_DEVELOPMENT, GOBP_MULTICELLULAR_ORGANISMAL_MOVEMENT
GO Biological Process (9): skeletal system development (GO:0001501), apoptotic process (GO:0006915), cell adhesion (GO:0007155), animal organ morphogenesis (GO:0009887), negative regulation of apoptotic process (GO:0043066), protein homooligomerization (GO:0051260), limb development (GO:0060173), cartilage homeostasis (GO:1990079), collagen fibril organization (GO:0030199)
GO Molecular Function (10): protease binding (GO:0002020), integrin binding (GO:0005178), extracellular matrix structural constituent (GO:0005201), calcium ion binding (GO:0005509), collagen binding (GO:0005518), heparin binding (GO:0008201), BMP binding (GO:0036122), proteoglycan binding (GO:0043394), heparan sulfate proteoglycan binding (GO:0043395), protein binding (GO:0005515)
GO Cellular Component (5): extracellular region (GO:0005576), extracellular matrix (GO:0031012), extracellular exosome (GO:0070062), thrombospondin complex (GO:1990341), protein-containing complex (GO:0032991)
Reactome top-level categories
1 top-level categories:
| Category | Pathways |
|---|---|
| Extracellular matrix organization | 2 |
GO top-level categories
35 GO namespaces:
| Category | Terms |
|---|---|
| protein-containing complex binding | 2 |
| system development | 1 |
| animal gross anatomical part developmental process | 1 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| cellular process | 1 |
| anatomical structure morphogenesis | 1 |
| animal organ development | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| protein complex oligomerization | 1 |
| appendage development | 1 |
| tissue homeostasis | 1 |
| extracellular matrix organization | 1 |
| enzyme binding | 1 |
| signaling receptor binding | 1 |
| cell adhesion molecule binding | 1 |
| structural molecule activity | 1 |
| extracellular matrix | 1 |
| metal ion binding | 1 |
| glycosaminoglycan binding | 1 |
| sulfur compound binding | 1 |
| cytokine binding | 1 |
| protein binding | 1 |
| carbohydrate derivative binding | 1 |
| proteoglycan binding | 1 |
| binding | 1 |
| cellular anatomical structure | 1 |
| external encapsulating structure | 1 |
| extracellular vesicle | 1 |
| non-collagenous component of interstitial matrix | 1 |
| extracellular protein-containing complex | 1 |
| cellular_component | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 13 of 25 annotations. The rest are phylogenetic / computational / electronic (IEA).
13 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| cartilage homeostasis | BP | direct assay |
| limb development | BP | direct assay |
| negative regulation of apoptotic process | BP | direct assay |
| protein homooligomerization | BP | direct assay |
| extracellular exosome | CC | high-throughput assay |
| extracellular matrix | CC | direct assay |
| extracellular region | CC | direct assay |
| calcium ion binding | MF | direct assay |
| collagen binding | MF | direct assay |
| heparan sulfate proteoglycan binding | MF | direct assay |
| heparin binding | MF | direct assay |
| protease binding | MF | physical interaction |
| proteoglycan binding | MF | direct assay |
Protein interactions and networks
STRING
showing 15 of 1,296 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| COMP | ACAN | P16112 | 823 |
| COMP | MATN3 | O15232 | 767 |
| COMP | COL2A1 | P02458 | 687 |
| COMP | FMOD | Q06828 | 687 |
| COMP | COL9A3 | Q14050 | 681 |
| COMP | ADAMTS7 | Q9UKP4 | 677 |
| COMP | DCN | P07585 | 676 |
| COMP | COL9A2 | Q14055 | 672 |
| COMP | HAPLN1 | P10915 | 659 |
| COMP | MMP13 | P45452 | 639 |
| COMP | MTX1 | Q13505 | 613 |
| COMP | PRG4 | Q92954 | 604 |
| COMP | CRP | P02741 | 598 |
| COMP | MMP3 | P08254 | 598 |
| COMP | BGN | P13247 | 597 |
IntAct
Human interaction partners of COMP in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
14 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| OTX1 | physical association | 0.780 | 7 |
| ADAMTS12 | physical association | 0.680 | 3 |
| AQP1 | physical association | 0.560 | 3 |
| ATOX1 | physical association | 0.560 | 3 |
| CYSRT1 | physical association | 0.560 | 3 |
| MEOX2 | physical association | 0.560 | 3 |
| NUFIP2 | physical association | 0.560 | 3 |
| SGTB | physical association | 0.560 | 3 |
| ACAN | direct interaction | 0.440 | 2 |
| ADAMTS7 | protein cleavage | 0.440 | 1 |
| MATN3 | direct interaction | 0.440 | 1 |
| VHL | physical association | 0.400 | 1 |
| P4HB | association | 0.350 | 2 |
| STAT3 | association | 0.350 | 1 |
BioGRID (15 interactions; top human partners by supporting records): OTX1 (Two-hybrid; 2 records), AQP1 (Two-hybrid), ATOX1 (Two-hybrid), C12orf49 (Negative Genetic), CYSRT1 (Two-hybrid), MATN2 (Affinity Capture-MS), MEOX2 (Two-hybrid), NUFIP2 (Two-hybrid), SGTB (Two-hybrid), SOX2 (Affinity Capture-MS), STAT3 (Affinity Capture-MS), UBE2H (Affinity Capture-MS), VHL (Affinity Capture-MS), XIAP (Affinity Capture-MS)
Disease & clinical
Genetic variants
Variant evidence for COMP: 927 ClinVar records (142 pathogenic / likely pathogenic); 3 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
927 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 54 |
| Likely pathogenic | 88 |
| Uncertain significance | 421 |
| Likely benign | 212 |
| Benign | 37 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 142 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 40988 | NM_000095.3(COMP):c.1405GAC[4] (p.Asp473del) | Pathogenic | criteria provided, multiple submitters, no conflicts | 13 |
| 40995 | NM_000095.3(COMP):c.1754C>T (p.Thr585Met) | Pathogenic | criteria provided, multiple submitters, no conflicts | 7 |
| 988295 | NM_000095.3(COMP):c.1201G>A (p.Asp401Asn) | Pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
| 1180714 | NM_000095.3(COMP):c.1403G>T (p.Cys468Phe) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 1723871 | NM_000095.3(COMP):c.1045G>C (p.Asp349His) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 2138263 | NM_000095.3(COMP):c.1423G>A (p.Asp475Asn) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 449474 | NM_000095.3(COMP):c.1195G>A (p.Asp399Asn) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 818216 | NM_000095.3(COMP):c.1309G>A (p.Asp437Asn) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 1327423 | NM_000095.3(COMP):c.1501G>A (p.Gly501Ser) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 618040 | NM_000095.3(COMP):c.1675G>A (p.Glu559Lys) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 803550 | NM_000095.3(COMP):c.818A>T (p.Asp273Val) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 1510817 | NM_000095.3(COMP):c.1153_1155del (p.Asp385del) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 2138264 | NM_000095.3(COMP):c.1372G>T (p.Asp458Tyr) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 2444368 | NM_000095.3(COMP):c.1316A>G (p.Asp439Gly) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 3723496 | NM_000095.3(COMP):c.1450T>G (p.Cys484Gly) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
Per-variant reference — Sugi Variant
Explore COMP’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 27 predictions of 1,264):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 19:18783052–18783053 | donor_loss | 1.0000 | 5 |
| 19:18784887 | donor_gain | 1.0000 | |
| 19:18784894–18784895 | donor_loss | 1.0000 | 4 |
| 19:18784943 | donor_gain | 1.0000 | |
| 19:18785093 | acceptor_loss | 1.0000 | |
| 19:18785099 | acceptor_gain | 1.0000 | |
| 19:18785671–18785672 | donor_loss | 1.0000 | 5 |
| 19:18786147–18786148 | acceptor_loss | 1.0000 | 5 |
| 19:18787651 | acceptor_gain | 1.0000 | |
| 19:18787651–18787652 | acceptor_loss | 1.0000 | 3 |
AlphaMissense
2,362 missense substitutions predicted likely pathogenic (of 5,062 scored), across 478 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| M613 | 9 | 0.837 | 0.981 |
| D595 | 8 | 0.996 | 0.999 |
| D593 | 8 | 0.994 | 0.998 |
| F727 | 8 | 0.993 | 1.000 |
| D290 | 8 | 0.992 | 0.998 |
| D567 | 8 | 0.992 | 0.997 |
| D269 | 8 | 0.991 | 0.997 |
| D271 | 8 | 0.991 | 0.995 |
| D273 | 8 | 0.990 | 0.996 |
| D437 | 8 | 0.989 | 0.997 |
| D446 | 8 | 0.988 | 0.997 |
| D518 | 8 | 0.988 | 0.994 |
| D540 | 8 | 0.988 | 0.995 |
| D439 | 8 | 0.986 | 0.996 |
| D435 | 8 | 0.985 | 0.996 |
| D349 | 8 | 0.982 | 0.996 |
| D326 | 8 | 0.981 | 0.996 |
| D482 | 8 | 0.981 | 0.995 |
| D509 | 8 | 0.981 | 0.991 |
| D317 | 8 | 0.976 | 0.989 |
HPA cancer prognostics
RNA cancer specificity: Cancer enhanced (Pancreatic Adenocarcinoma)
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
1 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Ovary Serous Cystadenocarcinoma (validation) | unfavorable | 0.000341 |
Disease associations
OMIM: gene MIM:600310 | disease phenotypes: MIM:132400, MIM:177170, MIM:619161
GenCC curated gene-disease
3 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| pseudoachondroplasia | Definitive | Autosomal dominant | 4 |
| COMP-related skeletal dysplasia | Definitive | Autosomal dominant | |
| multiple epiphyseal dysplasia type 1 | Strong | Autosomal dominant | 2 |
ClinGen Gene-Disease Validity
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
1 validity classifications:
| Disease | Classification | Inheritance |
|---|---|---|
| COMP-related skeletal dysplasia | Definitive | AD |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (4 panels, 4 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
4 panels:
| Panel | Rating |
|---|---|
| Fetal anomalies | green |
| Multiple Epiphyseal Dysplasia | green |
| Paediatric disorders | green |
| Skeletal dysplasia | green |
Mondo (5): multiple epiphyseal dysplasia type 1 (MONDO:0007561), pseudoachondroplasia (MONDO:0008322), multiple epiphyseal dysplasia (MONDO:0016648), carpal tunnel syndrome 2 (MONDO:0030883), COMP-related skeletal dysplasia (MONDO:0100593)
Orphanet (3): Multiple epiphyseal dysplasia type 1 (Orphanet:93308), Pseudoachondroplasia (Orphanet:750), Multiple epiphyseal dysplasia (Orphanet:251)
HPO phenotypes
showing 60 of 93 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000763 | Sensory neuropathy |
| HP:0000926 | Platyspondyly |
| HP:0001156 | Brachydactyly |
| HP:0001249 | Intellectual disability |
| HP:0001288 | Gait disturbance |
| HP:0001376 | Limitation of joint mobility |
| HP:0001377 | Limited elbow extension |
| HP:0001382 | Joint hypermobility |
| HP:0001385 | Hip dysplasia |
| HP:0001387 | Joint stiffness |
| HP:0001498 | Carpal bone hypoplasia |
| HP:0001763 | Pes planus |
| HP:0002341 | Cervical cord compression |
| HP:0002515 | Waddling gait |
| HP:0002650 | Scoliosis |
| HP:0002656 | Epiphyseal dysplasia |
| HP:0002663 | Delayed epiphyseal ossification |
| HP:0002758 | Osteoarthritis |
| HP:0002761 | Generalized joint hypermobility |
| HP:0002808 | Kyphosis |
| HP:0002812 | Coxa vara |
| HP:0002816 | Genu recurvatum |
| HP:0002829 | Arthralgia |
| HP:0002834 | Flared femoral metaphysis |
| HP:0002857 | Genu valgum |
| HP:0002938 | Lumbar hyperlordosis |
| HP:0002970 | Genu varum |
| HP:0003015 | Flared metaphysis |
| HP:0003016 | Metaphyseal widening |
| HP:0003025 | Metaphyseal irregularity |
| HP:0003026 | Short long bone |
| HP:0003049 | Ulnar deviation of the wrist |
| HP:0003090 | Hypoplasia of the capital femoral epiphysis |
| HP:0003093 | Limited hip extension |
| HP:0003170 | Abnormal acetabulum morphology |
| HP:0003180 | Flat acetabular roof |
| HP:0003300 | Ovoid vertebral bodies |
| HP:0003301 | Irregular vertebral endplates |
| HP:0003311 | Hypoplasia of the odontoid process |
| HP:0003312 | Abnormal vertebral body morphology |
| HP:0003365 | Arthralgia of the hip |
| HP:0003393 | Thenar muscle atrophy |
| HP:0003414 | Atlantoaxial dislocation |
| HP:0003498 | Disproportionate short stature |
| HP:0003502 | Mild short stature |
| HP:0003510 | Severe short stature |
| HP:0003756 | Skeletal myopathy |
| HP:0004019 | Radial metaphyseal irregularity |
| HP:0004042 | Ulnar metaphyseal irregularity |
| HP:0004236 | Irregular carpal bones |
| HP:0004568 | Beaking of vertebral bodies |
| HP:0005063 | Fragmented, irregular epiphyses |
| HP:0005720 | Shortening of all metacarpals |
| HP:0005743 | Avascular necrosis of the capital femoral epiphysis |
| HP:0006094 | Finger joint hypermobility |
| HP:0006149 | Increased laxity of fingers |
| HP:0006429 | Broad femoral neck |
| HP:0006460 | Ankle hypermobility |
| HP:0006467 | Limited shoulder movement |
GWAS associations
3 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST004199_2 | Osteoarthritis (with total hip replacement) | 4e-12 |
| GCST005171_40 | QT interval | 3e-6 |
| GCST002540_3 | Osteoarthritis biomarkers | 7e-6 |
EFO canonical traits (from GWAS)
3 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0005890 | osteoarthritis biomarker measurement |
| EFO:0007942 | hip osteoarthritis symptom severity measurement |
| EFO:0004682 | QT interval |
MeSH disease descriptors
1 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| C535819 | Pseudoachondroplasia *(supp.)* |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (CPIC guideline: no)
CTD chemical–gene interactions
26 total (human), top 26 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Tetrachlorodibenzodioxin | increases expression, affects expression | 4 |
| Valproic Acid | affects expression, increases expression | 4 |
| Benzo(a)pyrene | affects methylation, increases expression, increases methylation | 3 |
| Estradiol | increases expression | 2 |
| Tobacco Smoke Pollution | decreases expression, increases expression | 2 |
| N-((3,5-difluorophenyl)acetyl)alanyl-2-phenylglycine-1,1-dimethylethyl ester | increases expression | 1 |
| 2,4,6-tribromophenol | increases expression | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| HT-2 toxin | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| tetrabromobisphenol A | increases expression | 1 |
| corosolic acid | increases expression | 1 |
| abrine | increases expression | 1 |
| hexabrominated diphenyl ether 153 | increases expression | 1 |
| incobotulinumtoxinA | increases expression | 1 |
| Zoledronic Acid | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Aluminum Oxide | increases expression | 1 |
| Calcitriol | decreases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Urethane | increases expression | 1 |
| Zinc | increases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Asbestos, Crocidolite | increases expression | 1 |
| Cadmium Chloride | decreases expression | 1 |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 84 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT01042158 | Phase 4 | COMPLETED | A Clinical Trial of Ambrisentan and Tadalafil in Pulmonary Arterial Hypertension Associated With Systemic Sclerosis |
| NCT03688191 | Phase 4 | UNKNOWN | Study of Sirolimus in CTD-TP in China |
| NCT04169100 | Phase 4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04197050 | Phase 4 | UNKNOWN | Effect of Sacubitril/Valsartan on Reduced Right Ventricular Ejection Fraction in Patients With CTD |
| NCT04928586 | Phase 4 | UNKNOWN | Immunosuppressant Combined With Pirfenidone in CTD-ILD |
| NCT05440240 | Phase 4 | RECRUITING | Percutaneous Needle Fasciotomy +/- Corticosteroid Injection for Dupuytren’s Contracture |
| NCT05505409 | Phase 4 | UNKNOWN | Efficacy and Safety of Pirfenidone in CTD-ILD |
| NCT06499233 | Phase 4 | RECRUITING | Efficacy and Safety of Prophylactic Treatment for Pneumocystis Jirovecii Pneumonia in Patients With Autoimmune Inflammatory Rheumatic Disease |
| NCT00864201 | Phase 3 | UNKNOWN | A Study to Evaluate the Use of Bosentan in Patients With Exercise Induced Pulmonary Arterial Hypertension Associated With Connective Tissue Disease |
| NCT01196091 | Phase 3 | COMPLETED | A Study of LY2127399 in Participants With Systemic Lupus Erythematosus |
| NCT01205438 | Phase 3 | COMPLETED | A Study of LY2127399 in Participants With Systemic Lupus Erythematosus |
| NCT01488708 | Phase 3 | TERMINATED | On Open-Label Study in Participants With Systemic Lupus Erythematosus |
| NCT03626688 | Phase 3 | COMPLETED | A Study Evaluating the Efficacy and Safety of Ralinepag to Improve Treatment Outcomes in PAH Patients |
| NCT03683186 | Phase 3 | ENROLLING_BY_INVITATION | A Study Evaluating the Long-Term Efficacy and Safety of Ralinepag in Subjects With PAH Via an Open-Label Extension |
| NCT06716606 | Phase 3 | RECRUITING | A Study to Investigate the Long-term Safety and Efficacy of Belimumab in Adults With Interstitial Lung Disease (ILD) Associated With Systemic Sclerosis (SSc) and Other Connective Tissue Diseases (CTD) (BLISSconneCTD-OLE) |
| NCT06917690 | Phase 3 | RECRUITING | A Study to Learn About the Safety and Efficacy of the Drug Oleogel-S10 in Japanese Patients With Epidermolysis Bullosa |
| NCT03866200 | Phase 2 | TERMINATED | Resveratrol Trial for Relief of Pain in Pseudoachondroplasia |
| NCT00004357 | Phase 2 | COMPLETED | Absorption of Corticosteroids in Children With Juvenile Dermatomyositis |
| NCT00005675 | Phase 2 | COMPLETED | Oral Type I Collagen for Relieving Scleroderma |
| NCT01808196 | Phase 2 | COMPLETED | Testing Effectiveness of Losartan in Patients With EoE With or Without a CTD |
| NCT02682511 | Phase 2 | ACTIVE_NOT_RECRUITING | Oral Ifetroban to Treat Diffuse Cutaneous Systemic Sclerosis (SSc) or SSc-associated Pulmonary Arterial Hypertension |
| NCT04993885 | Phase 2 | RECRUITING | Avatrombopag in the Treatment of Adult Immune Thrombocytopenia With Autoantibodies |
| NCT05516758 | Phase 2 | TERMINATED | A Study of Peresolimab (LY3462817) in Participants With Moderately-to-Severely Active Rheumatoid Arthritis |
| NCT05998759 | Phase 2 | RECRUITING | Telitacicept for the Treatment of Connective Tissue Disease-associated Thrombocytopenia |
| NCT06104228 | Phase 2 | RECRUITING | 129 Xenon MRI as a Biomarker for Diagnosis and Response to Therapy in Pulmonary Arterial Hypertension (PAH) |
| NCT01093911 | Phase 1 | COMPLETED | Safety Study of CDP7657 in Healthy Volunteers and Patients With Systemic Lupus Erythematosus (SLE) |
| NCT01764594 | Phase 1 | COMPLETED | Safety Study of CDP7657 in Patients With Systemic Lupus Erythematosus |
| NCT02392130 | Phase 1 | COMPLETED | A Clinical Trial to Assess the Potential of LEO 130852A Gel to Reduce Steroid Induced Skin Atrophy on Healthy Skin |
| NCT03337165 | Phase 1 | COMPLETED | Autologous Tolerogenic Dendritic Cells for Treatment of Patients With Rheumatoid Arthritis |
| NCT03929120 | Phase 1 | COMPLETED | Allogeneic Bone Marrow Mesenchymal Stem Cells for Patients With Interstitial Lung Disease (ILD) & Connective Tissue Disorders (CTD) |
| NCT01424033 | Phase 2/3 | TERMINATED | A Clinical Trial for CTD-ILD Treatment |
| NCT04915482 | Phase 2/3 | UNKNOWN | TPO-RAs Combined With Anti-CD20 Antibody in the Treatment of Adult Immune Thrombocytopenia With Autoantibodies |
| NCT06574581 | Phase 1/2 | RECRUITING | ADSCs Therapy in Patients With CTD-ILD |
| NCT00001330 | Not specified | COMPLETED | Study of Silicone-Associated Connective Tissue Diseases |
| NCT00001641 | Not specified | COMPLETED | Study of Heritable Connective Tissue Disorders |
| NCT00001978 | Not specified | TERMINATED | Determination of Kidney Function |
| NCT00076830 | Not specified | COMPLETED | Evaluation and Treatment of Patients With Connective Tissue Disease |
| NCT00341679 | Not specified | COMPLETED | Studies of the Natural History and Pathogenesis of Autoimmune/Connective Tissue Diseases |
| NCT00470327 | Not specified | RECRUITING | A Study of the Natural Progression of Interstitial Lung Disease (ILD) |
| NCT00491309 | Not specified | UNKNOWN | Exercise and Respiratory Therapy in Patients With Rheumatoid Arthritis / Collagenosis and Pulmonary Hypertension |
| NCT00522002 | Not specified | COMPLETED | CLUE Study: Connective Tissue Disease Leg Ulcer Etiology Study |
| NCT00802607 | Not specified | TERMINATED | Collection of Tissue Specimens for Analysis and Establishment of Cell Cultures |
| NCT01208792 | Not specified | COMPLETED | Auto-immunity and Pulmonary Arterial Hypertension |
| NCT01379118 | Not specified | COMPLETED | Comparison of Clinical Outcomes and Performance of Total Knee Replacement Patients Before and After Surgery |
| NCT01387035 | Not specified | UNKNOWN | Early Diagnosis of Pulmonary Hypertension in Patients With Inflammatory Rheumatic Connective Tissue Diseases |
| NCT01656278 | Not specified | COMPLETED | An MRI-guided Treatment Strategy to Prevent Disease Progression in Patients With Rheumatoid Arthritis |
| NCT01809574 | Not specified | UNKNOWN | The Role of Rheumatological Evaluation in the Management of Patients With Interstitial Lung Disease |
| NCT02768259 | Not specified | UNKNOWN | Prevalence of Pulmonary Arterial Hypertension in Patients With Connective Tissue Diseases in Egyptian Patients |
| NCT03214263 | Not specified | UNKNOWN | Identification of New Biomarkers to Promote Personalized Treatment of Patients With Inflammatory Rheumatic Diseases |
| NCT03446339 | Not specified | UNKNOWN | Pulmonary Hypertension Screening for Rheumatology Patients (SOPHIE) |
| NCT03494036 | Not specified | COMPLETED | Effect of Synbiotic on Immune Response, Gut Permeability and Microbiota in Patient With Connective Tissue Disease |
| NCT03565601 | Not specified | UNKNOWN | Prognostic Value of Anti-Ro52 Antibodies in Connective Tissue Diseases (a-Ro52) |
| NCT03847753 | Not specified | COMPLETED | Exploring the Comorbidity Between Mental Disorders and General Medical Conditions |
| NCT04095351 | Not specified | RECRUITING | Connective Tissue Diseases and Lung Manifestations |
| NCT04171362 | Not specified | COMPLETED | The Effect of Connective Tissue Massage in Patients With Migraine |
| NCT04297371 | Not specified | COMPLETED | Early Detection of Cardiac Impairment and Prediction of RV Hypertrophy in Patients With CTD |
| NCT04398628 | Not specified | RECRUITING | ATHN Transcends: A Natural History Study of Non-Neoplastic Hematologic Disorders |
| NCT04428957 | Not specified | UNKNOWN | Telemonitoring of Treatment Effects in Connective Tissue Disease-associated Interstitial Lung Disease (TEL-CTD-ILD) |
| NCT04582292 | Not specified | UNKNOWN | Laryngeal Manifestations of Connective Tissue Diseases |
| NCT04664478 | Not specified | COMPLETED | Gene First Approach to Connective Tissue Disease |
Related Atlas pages
- Associated diseases: pseudoachondroplasia, multiple epiphyseal dysplasia type 1
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): carpal tunnel syndrome 2, connective tissue disorder, multiple epiphyseal dysplasia, multiple epiphyseal dysplasia type 1, osteoarthritis, pseudoachondroplasia