COPB2-DT

Summary

COPB2-DT (COPB2 divergent transcript, HGNC:55579) is a long non-coding RNA gene on chromosome 3q23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55579
Approved symbol	COPB2-DT
Name	COPB2 divergent transcript
Location	3q23
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-319G6.1
Ensembl gene	ENSG00000248932
Ensembl biotype	lncRNA
Entrez	100507291
RNAcentral	URS000075DDCF — lncRNA, 604 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 31 — 31 lncRNA

ENST00000381790, ENST00000504670, ENST00000507362, ENST00000510068, ENST00000512622, ENST00000514729, ENST00000515247, ENST00000653359, ENST00000655667, ENST00000658348, ENST00000659546, ENST00000660194, ENST00000661884, ENST00000662234, ENST00000664086, ENST00000664165, ENST00000670558, ENST00000685603, ENST00000686351, ENST00000690901, ENST00000691594, ENST00000731085, ENST00000731086, ENST00000731087, ENST00000731088, ENST00000731089, ENST00000731090, ENST00000731091, ENST00000731092, ENST00000731093, ENST00000731094

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000381790 — 3 exons

Exon	Start	End
ENSE00002050254	139539916	139540224
ENSE00002066137	139583129	139583254
ENSE00002086253	139577792	139577850

Expression profiles

Bgee: expression breadth ubiquitous, 172 present calls, max score 95.23.

Top tissues by expression

253 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	95.23	gold quality
left testis	UBERON:0004533	87.46	gold quality
right testis	UBERON:0004534	87.40	gold quality
right uterine tube	UBERON:0001302	87.24	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.28	gold quality
testis	UBERON:0000473	85.41	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.31	gold quality
left ovary	UBERON:0002119	84.30	gold quality
right ovary	UBERON:0002118	82.17	gold quality
adrenal tissue	UBERON:0018303	81.52	gold quality
cortical plate	UBERON:0005343	80.79	gold quality
cardiac muscle of right atrium	UBERON:0003379	80.57	gold quality
ovary	UBERON:0000992	80.51	gold quality
left ventricle myocardium	UBERON:0006566	80.46	gold quality
calcaneal tendon	UBERON:0003701	80.15	gold quality
adenohypophysis	UBERON:0002196	79.99	gold quality
sural nerve	UBERON:0015488	79.57	gold quality
pituitary gland	UBERON:0000007	79.56	gold quality
islet of Langerhans	UBERON:0000006	78.34	gold quality
corpus callosum	UBERON:0002336	78.28	gold quality
bone marrow cell	CL:0002092	78.06	gold quality
colonic epithelium	UBERON:0000397	78.01	gold quality
hindlimb stylopod muscle	UBERON:0004252	77.54	gold quality
pancreas	UBERON:0001264	76.89	gold quality
body of pancreas	UBERON:0001150	76.81	gold quality
ventricular zone	UBERON:0003053	76.02	gold quality
ganglionic eminence	UBERON:0004023	76.00	gold quality
epithelial cell of pancreas	CL:0000083	75.95	gold quality
right atrium auricular region	UBERON:0006631	75.18	gold quality
cardiac atrium	UBERON:0002081	75.16	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.23

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.