CORO2A
gene geneOn this page
Also known as IR10WDR2
Summary
CORO2A (coronin 2A, HGNC:2255) is a protein-coding gene on chromosome 9q22.33, encoding Coronin-2A (Q92828).
This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. This protein contains 5 WD repeats, and has a structural similarity with actin-binding proteins: the D. discoideum coronin and the human p57 protein, suggesting that this protein may also be an actin-binding protein that regulates cell motility. Alternative splicing of this gene generates 2 transcript variants.
Source: NCBI Gene 7464 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 117 total
- MANE Select transcript:
NM_052820
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2255 |
| Approved symbol | CORO2A |
| Name | coronin 2A |
| Location | 9q22.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | IR10, WDR2 |
| Ensembl gene | ENSG00000106789 |
| Ensembl biotype | protein_coding |
| OMIM | 602159 |
| Entrez | 7464 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 15 protein_coding
ENST00000343933, ENST00000375077, ENST00000871381, ENST00000871382, ENST00000871383, ENST00000871384, ENST00000871385, ENST00000871386, ENST00000871387, ENST00000930884, ENST00000930885, ENST00000930886, ENST00000948660, ENST00000948661, ENST00000948662
RefSeq mRNA: 2 — MANE Select: NM_052820
NM_003389, NM_052820
CCDS: CCDS6735
Canonical transcript exons
ENST00000375077 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000715194 | 98126549 | 98126823 |
| ENSE00000715198 | 98128607 | 98128719 |
| ENSE00000715200 | 98129794 | 98129890 |
| ENSE00000715202 | 98130955 | 98131059 |
| ENSE00000715204 | 98132185 | 98132301 |
| ENSE00000715206 | 98133038 | 98133217 |
| ENSE00000715209 | 98134806 | 98134955 |
| ENSE00000715212 | 98137572 | 98137688 |
| ENSE00001281957 | 98128170 | 98128260 |
| ENSE00001353517 | 98192559 | 98192637 |
| ENSE00001465684 | 98120975 | 98124905 |
| ENSE00001465687 | 98157460 | 98157660 |
Expression profiles
Bgee: expression breadth ubiquitous, 216 present calls, max score 89.83.
FANTOM5 (CAGE): breadth broad, TPM avg 2.3477 / max 51.9883, expressed in 808 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 101673 | 2.3409 | 802 |
| 101670 | 0.0068 | 3 |
Top tissues by expression
283 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| jejunal mucosa | UBERON:0000399 | 89.83 | gold quality |
| duodenum | UBERON:0002114 | 88.71 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 87.32 | gold quality |
| gall bladder | UBERON:0002110 | 86.51 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 84.52 | gold quality |
| penis | UBERON:0000989 | 83.97 | gold quality |
| bronchial epithelial cell | CL:0002328 | 83.79 | gold quality |
| esophagus mucosa | UBERON:0002469 | 82.91 | gold quality |
| colonic mucosa | UBERON:0000317 | 82.89 | gold quality |
| rectum | UBERON:0001052 | 82.73 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 82.35 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 81.72 | gold quality |
| jejunum | UBERON:0002115 | 81.63 | gold quality |
| small intestine | UBERON:0002108 | 81.59 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 81.28 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 80.50 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 80.48 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 79.77 | gold quality |
| oocyte | CL:0000023 | 79.54 | gold quality |
| bone marrow | UBERON:0002371 | 79.27 | gold quality |
| transverse colon | UBERON:0001157 | 79.21 | gold quality |
| lower lobe of lung | UBERON:0008949 | 79.15 | gold quality |
| ileal mucosa | UBERON:0000331 | 78.66 | gold quality |
| buccal mucosa cell | CL:0002336 | 78.53 | silver quality |
| esophagus squamous epithelium | UBERON:0006920 | 78.51 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 78.28 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 78.09 | gold quality |
| bronchus | UBERON:0002185 | 77.91 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 77.56 | gold quality |
| cerebellar cortex | UBERON:0002129 | 77.55 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 8.84 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
131 targeting CORO2A, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-5680 | 99.91 | 69.83 | 3421 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
| HSA-MIR-4779 | 99.86 | 66.50 | 1583 |
| HSA-MIR-659-3P | 99.85 | 70.69 | 1620 |
| HSA-MIR-369-3P | 99.85 | 70.52 | 2264 |
| HSA-MIR-130B-5P | 99.83 | 68.50 | 1888 |
| HSA-MIR-374C-5P | 99.80 | 72.06 | 2910 |
| HSA-MIR-655-3P | 99.80 | 72.19 | 2909 |
| HSA-MIR-448 | 99.79 | 72.37 | 2103 |
Literature-anchored findings (GeneRIF, showing 6)
- This protein is one of 10-12 associated proteins in the purified N-CoR complex. (PMID:12628926)
- Coronin 2A and cofilin regulate a subset of focal-adhesion-turnover events. (PMID:19654210)
- The candidate marker CORO2A rs1985859 and the putative marker FAM101A rs7955740 may be of value for the prediction of radiosensitivity to preoperative colorectal tumors. (PMID:23490283)
- increased expression of coronin 2A is associated with the malignant phenotype of human colon carcinoma. (PMID:26373535)
- The regulation of CORO2A through the deubiquitinating activity of USP19 affected the transcriptional repression activity of the retinoic acid receptor (RAR), suggesting that USP19 may be involved in the regulation of RAR-mediated adipogenesis. (PMID:27129179)
- Molecular Pathogenesis of the Coronin Family: CORO2A Facilitates Migration and Invasion Abilities in Oral Squamous Cell Carcinoma. (PMID:34884487)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | coro2aa | ENSDARG00000005210 |
| danio_rerio | coro2ab | ENSDARG00000095969 |
| mus_musculus | Coro2a | ENSMUSG00000028337 |
| rattus_norvegicus | Coro2a | ENSRNOG00000008901 |
| drosophila_melanogaster | coro | FBGN0265935 |
| caenorhabditis_elegans | WBGENE00000768 |
Paralogs (6): CORO1A (ENSG00000102879), CORO2B (ENSG00000103647), CORO1C (ENSG00000110880), CORO6 (ENSG00000167549), CORO1B (ENSG00000172725), CORO7 (ENSG00000262246)
Protein
Protein identifiers
Coronin-2A — Q92828 (reviewed: Q92828)
Alternative names: IR10, WD repeat-containing protein 2
All UniProt accessions (1): Q92828
UniProt curated annotations — full annotation on UniProt →
Subunit / interactions. Binds actin. Component of the N-Cor repressor complex, at least composed of NCOR1, NCOR2, HDAC3, TBL1X, TBL1R, CORO2A and GPS2.
Similarity. Belongs to the WD repeat coronin family.
RefSeq proteins (2): NP_003380, NP_438171* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001680 | WD40_rpt | Repeat |
| IPR015048 | DUF1899 | Domain |
| IPR015505 | Coronin | Family |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Homologous_superfamily |
| IPR019775 | WD40_repeat_CS | Conserved_site |
| IPR036322 | WD40_repeat_dom_sf | Homologous_superfamily |
Pfam: PF00400, PF08953, PF16300
UniProt features (15 total): repeat 7, sequence conflict 4, sequence variant 2, chain 1, coiled-coil region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q92828-F1 | 85.12 | 0.75 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 210 (showing top):
TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_6HR_DN, YAATNRNNNYNATT_UNKNOWN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, MYOD_01, GOBP_ACTIN_FILAMENT_ORGANIZATION, SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_UP, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5, chr9q22, GOMF_ACTIN_BINDING, E12_Q6, TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_16D_DN, RODRIGUES_DCC_TARGETS_DN, GOCC_APICAL_PART_OF_CELL, GOCC_TRANSCRIPTION_REPRESSOR_COMPLEX
GO Biological Process (1): intracellular signal transduction (GO:0035556)
GO Molecular Function (3): actin filament binding (GO:0051015), actin binding (GO:0003779), protein binding (GO:0005515)
GO Cellular Component (2): brush border (GO:0005903), transcription repressor complex (GO:0017053)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| intracellular anatomical structure | 1 |
| signal transduction | 1 |
| actin binding | 1 |
| protein-containing complex binding | 1 |
| cytoskeletal protein binding | 1 |
| binding | 1 |
| microvillus | 1 |
| apical part of cell | 1 |
| cluster of actin-based cell projections | 1 |
| transcription regulator complex | 1 |
Protein interactions and networks
STRING
1818 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CORO2A | COP1 | Q8NHY2 | 750 |
| CORO2A | WDR1 | O75083 | 567 |
| CORO2A | SOD2 | P04179 | 500 |
| CORO2A | ACTB | P02570 | 498 |
| CORO2A | NISCH | Q9Y2I1 | 480 |
| CORO2A | GPS2 | Q13227 | 479 |
| CORO2A | POTEF | A5A3E0 | 477 |
| CORO2A | HDAC3 | O15379 | 447 |
| CORO2A | TBL1XR1 | Q9BZK7 | 417 |
| CORO2A | RFLNA | Q6ZTI6 | 414 |
| CORO2A | ITGB6 | P18564 | 392 |
| CORO2A | NCOR1 | O75376 | 391 |
| CORO2A | DET1 | Q7L5Y6 | 382 |
| CORO2A | CFL2 | Q9Y281 | 379 |
| CORO2A | TAB2 | Q9NYJ8 | 371 |
IntAct
84 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SMARCB1 | ARID1A | psi-mi:“MI:0914”(association) | 0.860 |
| CORO2A | NR1H2 | psi-mi:“MI:0915”(physical association) | 0.580 |
| NR1H2 | CORO2A | psi-mi:“MI:0915”(physical association) | 0.580 |
| FXN | CORO2A | psi-mi:“MI:0915”(physical association) | 0.560 |
| CORO2A | LITAF | psi-mi:“MI:0915”(physical association) | 0.560 |
| NEURL4 | APBB1 | psi-mi:“MI:0914”(association) | 0.530 |
| CSN2 | PPP3CC | psi-mi:“MI:0914”(association) | 0.530 |
| CSN2 | CRYBB3 | psi-mi:“MI:0914”(association) | 0.530 |
| DBN1 | SVIL | psi-mi:“MI:0914”(association) | 0.530 |
| SSH1 | GSN | psi-mi:“MI:0914”(association) | 0.530 |
| BCLAF1 | CORO2A | psi-mi:“MI:0915”(physical association) | 0.500 |
| CORO2A | BCLAF1 | psi-mi:“MI:0914”(association) | 0.500 |
| THRAP3 | HNRNPC | psi-mi:“MI:0914”(association) | 0.480 |
| CORO2A | BCLAF1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| THAP4 | CORO2A | psi-mi:“MI:0915”(physical association) | 0.400 |
| AURKA | CORO2A | psi-mi:“MI:0915”(physical association) | 0.370 |
| CORO2A | BUB1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CORO2A | DCC | psi-mi:“MI:0915”(physical association) | 0.370 |
| DLC1 | CORO2A | psi-mi:“MI:0915”(physical association) | 0.370 |
| NRAS | CORO2A | psi-mi:“MI:0915”(physical association) | 0.370 |
| CORO2A | RB1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SMAD2 | CORO2A | psi-mi:“MI:0915”(physical association) | 0.370 |
| Dctn3 | psi-mi:“MI:0914”(association) | 0.350 | |
| ANLN | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (95): CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS), CORO2A (Affinity Capture-MS)
ESM2 similar proteins: A0A1W2PQ27, A0A1W2PQ64, A0A1W2PQC6, A0A1W2PQD8, A0A1W2PQJ5, A0A1W2PR75, A2AV36, A4QN59, A6QQV6, D4A1F2, F1RA39, G5E8F4, J9SQF3, O00142, O42868, O55239, O95050, O95932, O97972, P0CR76, P0CR77, P10938, P40261, P40936, P53538, Q01841, Q22453, Q32LP9, Q4R7D0, Q566Y1, Q5M9G7, Q5RFR7, Q5U4E8, Q5XG58, Q62160, Q6C195, Q6CQ61, Q6DE00, Q6FMU7, Q6PCI6
Diamond homologs: A1CF18, A6ZPA9, A7RHG8, A8IR43, B0W517, B0XAF3, B3MJV8, B3N534, B3RQN1, B4GT01, B4HWV6, B4JPT9, B4KKN1, B4LS78, B4MU54, B4P116, B4Q9T6, B5DG67, B6K1G6, B6QC06, B7PY76, C4JZS6, C4R6H3, D1ZEM6, D5GBI7, G0SA60, O14021, O35142, O35828, O48847, O54929, O55029, P40066, P41318, P53699, P57737, P61480, Q04305, Q05B17, Q0D0X6
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 86 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Signaling by ALK fusions and activated point mutants | 5 | 15.3× | 6e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| actin filament organization | 6 | 10.0× | 4e-03 |
| actin cytoskeleton organization | 8 | 8.9× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
117 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 93 |
| Likely benign | 5 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1750 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:98124903:CAA:C | acceptor_gain | 1.0000 |
| 9:98124904:AAC:A | acceptor_loss | 1.0000 |
| 9:98124906:C:CC | acceptor_gain | 1.0000 |
| 9:98124906:C:CG | acceptor_loss | 1.0000 |
| 9:98124907:T:C | acceptor_loss | 1.0000 |
| 9:98128257:CTGA:C | acceptor_gain | 1.0000 |
| 9:98128261:C:CC | acceptor_gain | 1.0000 |
| 9:98128601:CCTTA:C | donor_loss | 1.0000 |
| 9:98128603:TTA:T | donor_loss | 1.0000 |
| 9:98128604:TA:T | donor_loss | 1.0000 |
| 9:98128605:A:AC | donor_gain | 1.0000 |
| 9:98128605:AC:A | donor_gain | 1.0000 |
| 9:98128606:C:A | donor_loss | 1.0000 |
| 9:98128606:C:CC | donor_gain | 1.0000 |
| 9:98128606:CC:C | donor_gain | 1.0000 |
| 9:98128606:CCCG:C | donor_gain | 1.0000 |
| 9:98128717:CAC:C | acceptor_gain | 1.0000 |
| 9:98128718:ACC:A | acceptor_loss | 1.0000 |
| 9:98128720:C:CC | acceptor_gain | 1.0000 |
| 9:98128720:CTGA:C | acceptor_loss | 1.0000 |
| 9:98128721:T:G | acceptor_loss | 1.0000 |
| 9:98129790:TTACC:T | donor_loss | 1.0000 |
| 9:98129791:T:TG | donor_loss | 1.0000 |
| 9:98129792:A:AC | donor_gain | 1.0000 |
| 9:98129792:ACC:A | donor_loss | 1.0000 |
| 9:98129793:C:CC | donor_gain | 1.0000 |
| 9:98129793:C:T | donor_loss | 1.0000 |
| 9:98129793:CCGAT:C | donor_gain | 1.0000 |
| 9:98129887:CTCC:C | acceptor_gain | 1.0000 |
| 9:98129888:TCC:T | acceptor_gain | 1.0000 |
AlphaMissense
3453 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:98128671:C:G | R339P | 0.999 |
| 9:98134824:A:C | S150R | 0.999 |
| 9:98134824:A:T | S150R | 0.999 |
| 9:98134826:T:G | S150R | 0.999 |
| 9:98134856:A:G | W140R | 0.999 |
| 9:98134856:A:T | W140R | 0.999 |
| 9:98137622:A:G | W90R | 0.999 |
| 9:98137622:A:T | W90R | 0.999 |
| 9:98133072:C:G | R205P | 0.998 |
| 9:98137594:G:T | A99D | 0.998 |
| 9:98157515:G:T | A49E | 0.998 |
| 9:98157617:A:T | V15D | 0.998 |
| 9:98128191:A:G | W384R | 0.997 |
| 9:98128191:A:T | W384R | 0.997 |
| 9:98128236:A:C | Y369D | 0.997 |
| 9:98128617:A:T | V357E | 0.997 |
| 9:98128666:A:C | Y341D | 0.997 |
| 9:98132207:C:G | R248P | 0.997 |
| 9:98133208:A:G | W160R | 0.997 |
| 9:98133208:A:T | W160R | 0.997 |
| 9:98134946:A:G | W110R | 0.997 |
| 9:98134946:A:T | W110R | 0.997 |
| 9:98137636:A:T | V85D | 0.997 |
| 9:98157476:A:T | V62D | 0.997 |
| 9:98157516:C:G | A49P | 0.997 |
| 9:98130969:A:C | Y286D | 0.996 |
| 9:98137580:C:G | D104H | 0.996 |
| 9:98137586:A:G | S102P | 0.996 |
| 9:98137592:A:G | S100P | 0.996 |
| 9:98157611:C:T | G17D | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000063583 (9:98134364 C>G,T), RS1000065143 (9:98181579 T>C), RS1000073095 (9:98166250 C>T), RS1000142073 (9:98141132 A>G), RS1000147714 (9:98166626 A>T), RS1000150208 (9:98133895 T>C), RS1000191362 (9:98125288 G>A), RS1000193106 (9:98189950 T>G), RS1000224380 (9:98190194 C>A,T), RS1000302771 (9:98143256 C>T), RS1000346397 (9:98188623 G>A), RS1000351424 (9:98172211 C>G), RS1000355679 (9:98143709 T>C), RS1000366950 (9:98144049 T>C), RS1000457815 (9:98137408 C>A,G,T)
Disease associations
OMIM: gene MIM:602159 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): myoepithelial tumor (MONDO:0002380)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006168_7 | Pulse pressure x alcohol consumption interaction (2df test) | 1.000000e-09 |
| GCST008514_15 | Peginterferon alfa-2a treatment response in chronic hepatitis B infection | 5.000000e-06 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004329 | alcohol drinking |
| EFO:0005763 | pulse pressure measurement |
| EFO:0010103 | response to peginterferon alfa-2a |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009208 | Myoepithelioma | C04.557.435.585 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
59 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects expression, increases methylation, affects cotreatment | 9 |
| trichostatin A | increases expression, affects cotreatment | 3 |
| sodium arsenite | decreases expression, affects cotreatment, increases abundance | 3 |
| Benzo(a)pyrene | decreases expression, increases methylation | 3 |
| Tretinoin | increases expression | 3 |
| entinostat | increases expression, affects cotreatment | 2 |
| Vorinostat | affects cotreatment, increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Air Pollutants | decreases expression, affects expression, increases abundance | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| pirinixic acid | increases activity, affects binding, decreases expression | 1 |
| deoxynivalenol | decreases expression | 1 |
| beta-lapachone | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | affects expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment, decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| bisphenol S | affects cotreatment, increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Temozolomide | increases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Amiodarone | increases expression | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
Clinical trials (associated diseases)
5 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03600649 | PHASE1 | UNKNOWN | Clinical Trial of SP-2577 (Seclidemstat) in Patients With Relapsed or Refractory Ewing or Ewing-related Sarcomas |
| NCT05266196 | PHASE1/PHASE2 | UNKNOWN | A Rollover Protocol to Allow for Continued Access to the LSD1 Inhibitor Seclidemstat (SP-2577) |
| NCT06239272 | PHASE1/PHASE2 | RECRUITING | NRSTS2021, A Risk Adapted Study Evaluating Maintenance Pazopanib, Limited Margin, Dose-Escalated Radiation Therapy and Selinexor in Non-Rhabdomyosarcoma Soft Tissue Sarcoma (NRSTS) |
| NCT06625190 | PHASE1/PHASE2 | RECRUITING | Alpha/Beta T and B Cell Depletion With Zoledronic Acid for Solid Tumors |
| NCT06244420 | Not specified | COMPLETED | Malignant Myoepithelioma of Bone and Soft Tissues: Diagnostic Imaging and Histology in Relation to Prognosis |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): myoepithelial tumor