COXFA4L3-AS1

Summary

COXFA4L3-AS1 (COXFA4L3 antisense RNA 1, HGNC:56076) is a long non-coding RNA gene on chromosome 15q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56076
Approved symbol	COXFA4L3-AS1
Name	COXFA4L3 antisense RNA 1
Location	15q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259342
Ensembl biotype	lncRNA
Entrez	107987223

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000559553

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000559553 — 3 exons

Exon	Start	End
ENSE00002559608	45433613	45434150
ENSE00002566646	45441781	45441808
ENSE00002572105	45430652	45430814

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 89.43.

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
mucosa of transverse colon	UBERON:0004991	89.43	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.42	gold quality
transverse colon	UBERON:0001157	82.18	gold quality
rectum	UBERON:0001052	80.96	gold quality
endometrium	UBERON:0001295	79.12	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.10	silver quality
colonic epithelium	UBERON:0000397	74.44	gold quality
vermiform appendix	UBERON:0001154	71.01	gold quality
colon	UBERON:0001155	70.83	gold quality
intestine	UBERON:0000160	70.20	gold quality
small intestine	UBERON:0002108	68.67	gold quality
small intestine Peyer’s patch	UBERON:0003454	68.26	gold quality
duodenum	UBERON:0002114	66.13	gold quality
islet of Langerhans	UBERON:0000006	64.56	gold quality
bone marrow cell	CL:0002092	63.70	silver quality
bone marrow	UBERON:0002371	62.52	gold quality
ventricular zone	UBERON:0003053	59.74	gold quality
skeletal muscle tissue	UBERON:0001134	59.53	gold quality
ganglionic eminence	UBERON:0004023	58.19	gold quality
thoracic mammary gland	UBERON:0005200	57.30	gold quality
body of uterus	UBERON:0009853	56.77	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.57	gold quality
gall bladder	UBERON:0002110	56.48	gold quality
apex of heart	UBERON:0002098	56.22	gold quality
smooth muscle tissue	UBERON:0001135	56.00	gold quality
adult mammalian kidney	UBERON:0000082	54.10	gold quality
prefrontal cortex	UBERON:0000451	53.93	gold quality
heart left ventricle	UBERON:0002084	53.81	gold quality
kidney	UBERON:0002113	53.55	gold quality
lymph node	UBERON:0000029	53.35	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-MTAB-9543	yes	4261.59
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.