CPEB1-AS1

Summary

CPEB1-AS1 (CPEB1 antisense RNA 1, HGNC:27523) is a long non-coding RNA gene on chromosome 15q25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27523
Approved symbol	CPEB1-AS1
Name	CPEB1 antisense RNA 1
Location	15q25.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259462
Ensembl biotype	lncRNA
Entrez	283692
RNAcentral	URS000075A527 — lncRNA, 2168 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000560650, ENST00000618020, ENST00000654760

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000560650 — 4 exons

Exon	Start	End
ENSE00002539323	82647770	82648808
ENSE00002555652	82650029	82650146
ENSE00002560627	82649771	82649941
ENSE00002567931	82692011	82692820

Expression profiles

Bgee: expression breadth ubiquitous, 143 present calls, max score 80.01.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0514 / max 4.5190, expressed in 25 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
148099	0.0514	25

Top tissues by expression

233 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.01	gold quality
sural nerve	UBERON:0015488	76.12	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	72.17	gold quality
adenohypophysis	UBERON:0002196	69.96	gold quality
spinal cord	UBERON:0002240	69.29	gold quality
pituitary gland	UBERON:0000007	68.85	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.19	gold quality
right uterine tube	UBERON:0001302	66.87	gold quality
left testis	UBERON:0004533	63.47	gold quality
right testis	UBERON:0004534	63.12	gold quality
testis	UBERON:0000473	62.87	gold quality
corpus callosum	UBERON:0002336	61.94	gold quality
buccal mucosa cell	CL:0002336	61.78	gold quality
left ovary	UBERON:0002119	61.41	gold quality
right ovary	UBERON:0002118	60.31	gold quality
prefrontal cortex	UBERON:0000451	59.98	gold quality
Brodmann (1909) area 9	UBERON:0013540	59.93	gold quality
substantia nigra	UBERON:0002038	59.73	gold quality
tibial nerve	UBERON:0001323	58.98	gold quality
right frontal lobe	UBERON:0002810	58.89	gold quality
hypothalamus	UBERON:0001898	58.79	gold quality
ovary	UBERON:0000992	58.43	gold quality
amygdala	UBERON:0001876	57.85	gold quality
anterior cingulate cortex	UBERON:0009835	57.46	gold quality
midbrain	UBERON:0001891	57.36	gold quality
ganglionic eminence	UBERON:0004023	57.05	silver quality
endocervix	UBERON:0000458	56.26	gold quality
body of uterus	UBERON:0009853	56.17	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	56.10	gold quality
neocortex	UBERON:0001950	56.07	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.59

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.