CPNE2-DT

Summary

CPNE2-DT (CPNE2 divergent transcript, HGNC:55398) is a long non-coding RNA gene on chromosome 16q13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55398
Approved symbol	CPNE2-DT
Name	CPNE2 divergent transcript
Location	16q13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260148
Ensembl biotype	lncRNA
Entrez	119863867
RNAcentral	URS000023FBE5 — lncRNA, 472 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000565829

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000565829 — 2 exons

Exon	Start	End
ENSE00002608067	57091213	57091307
ENSE00002610189	57091927	57092303

Expression profiles

Bgee: expression breadth broad, 83 present calls, max score 91.99.

Top tissues by expression

83 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.99	gold quality
bone marrow cell	CL:0002092	68.40	silver quality
ganglionic eminence	UBERON:0004023	64.64	gold quality
calcaneal tendon	UBERON:0003701	63.48	gold quality
bone marrow	UBERON:0002371	63.14	silver quality
lymph node	UBERON:0000029	60.91	gold quality
monocyte	CL:0000576	60.39	gold quality
leukocyte	CL:0000738	59.68	gold quality
duodenum	UBERON:0002114	55.89	gold quality
prefrontal cortex	UBERON:0000451	53.07	gold quality
blood	UBERON:0000178	53.03	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.94	gold quality
vermiform appendix	UBERON:0001154	51.64	gold quality
muscle of leg	UBERON:0001383	51.58	gold quality
corpus callosum	UBERON:0002336	49.72	silver quality
frontal cortex	UBERON:0001870	47.62	gold quality
gastrocnemius	UBERON:0001388	47.54	silver quality
granulocyte	CL:0000094	47.34	silver quality
right lobe of liver	UBERON:0001114	46.46	silver quality
thyroid gland	UBERON:0002046	45.51	gold quality
heart left ventricle	UBERON:0002084	45.13	gold quality
small intestine	UBERON:0002108	45.10	gold quality
adult mammalian kidney	UBERON:0000082	44.56	gold quality
spleen	UBERON:0002106	44.23	silver quality
body of pancreas	UBERON:0001150	44.20	silver quality
body of uterus	UBERON:0009853	44.10	gold quality
tibial artery	UBERON:0007610	43.98	silver quality
amygdala	UBERON:0001876	43.95	gold quality
small intestine Peyer’s patch	UBERON:0003454	43.94	gold quality
multicellular organism	UBERON:0000468	43.90	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.