CRACR2A
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Also known as MGC4266RAB46
Summary
CRACR2A (calcium release activated channel regulator 2A, HGNC:28657) is a protein-coding gene on chromosome 12p13.32, encoding EF-hand calcium-binding domain-containing protein 4B (Q9BSW2). Ca(2+)-binding protein that plays a key role in store-operated Ca(2+) entry (SOCE) in T-cells by regulating CRAC channel activation.
Enables GTPase activity and calcium ion binding activity. Involved in several processes, including activation of store-operated calcium channel activity; positive regulation of JNK cascade; and store-operated calcium entry. Located in several cellular components, including Golgi apparatus; Weibel-Palade body; and immunological synapse.
Source: NCBI Gene 84766 — RefSeq curated summary.
At a glance
- Gene–disease (curated): combined immunodeficiency (Limited, ClinGen)
- GWAS associations: 8
- Clinical variants (ClinVar): 159 total — 1 pathogenic
- Phenotypes (HPO): 1
- Druggable target: yes
- MANE Select transcript:
NM_001144958
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28657 |
| Approved symbol | CRACR2A |
| Name | calcium release activated channel regulator 2A |
| Location | 12p13.32 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC4266, RAB46 |
| Ensembl gene | ENSG00000130038 |
| Ensembl biotype | protein_coding |
| OMIM | 614178 |
| Entrez | 84766 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 10 protein_coding, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000252322, ENST00000333750, ENST00000440314, ENST00000514026, ENST00000535292, ENST00000535507, ENST00000893446, ENST00000893447, ENST00000893448, ENST00000944630, ENST00000944631, ENST00000944632, ENST00000944633
RefSeq mRNA: 2 — MANE Select: NM_001144958
NM_001144958, NM_032680
CCDS: CCDS44803, CCDS8522
Canonical transcript exons
ENST00000440314 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001366638 | 3732942 | 3733210 |
| ENSE00001371869 | 3713237 | 3713317 |
| ENSE00001631456 | 3615328 | 3615439 |
| ENSE00001649455 | 3654212 | 3654399 |
| ENSE00001683288 | 3656311 | 3656406 |
| ENSE00001685207 | 3678915 | 3679098 |
| ENSE00001710471 | 3673446 | 3673592 |
| ENSE00001744975 | 3680238 | 3680349 |
| ENSE00001746411 | 3638124 | 3638454 |
| ENSE00001750198 | 3659564 | 3659654 |
| ENSE00001764797 | 3648542 | 3648613 |
| ENSE00002214377 | 3753015 | 3753109 |
| ENSE00002260533 | 3696772 | 3697035 |
| ENSE00003472836 | 3627625 | 3627706 |
| ENSE00003474880 | 3619271 | 3619372 |
| ENSE00003499076 | 3627436 | 3627550 |
| ENSE00003529690 | 3644595 | 3644640 |
| ENSE00003649080 | 3641732 | 3641838 |
| ENSE00003678552 | 3616954 | 3617030 |
| ENSE00003681013 | 3633604 | 3633736 |
Expression profiles
Bgee: expression breadth ubiquitous, 210 present calls, max score 97.54.
FANTOM5 (CAGE): breadth broad, TPM avg 2.8524 / max 193.3725, expressed in 852 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 128994 | 1.9841 | 627 |
| 128995 | 0.5029 | 265 |
| 128996 | 0.1774 | 77 |
| 128997 | 0.1515 | 53 |
| 128992 | 0.0365 | 11 |
Top tissues by expression
244 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| parotid gland | UBERON:0001831 | 97.54 | gold quality |
| ileal mucosa | UBERON:0000331 | 96.07 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 94.12 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 93.45 | gold quality |
| colonic mucosa | UBERON:0000317 | 91.97 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 91.54 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 88.45 | gold quality |
| rectum | UBERON:0001052 | 88.44 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 88.28 | gold quality |
| trachea | UBERON:0003126 | 87.00 | gold quality |
| minor salivary gland | UBERON:0001830 | 86.09 | gold quality |
| bone marrow cell | CL:0002092 | 85.85 | gold quality |
| bronchial epithelial cell | CL:0002328 | 85.41 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 85.40 | gold quality |
| bronchus | UBERON:0002185 | 85.08 | gold quality |
| pancreatic ductal cell | CL:0002079 | 84.86 | silver quality |
| colonic epithelium | UBERON:0000397 | 84.56 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 84.34 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 83.22 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 83.01 | gold quality |
| granulocyte | CL:0000094 | 82.74 | gold quality |
| mouth mucosa | UBERON:0003729 | 82.69 | gold quality |
| thymus | UBERON:0002370 | 82.48 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 81.74 | gold quality |
| tonsil | UBERON:0002372 | 81.49 | gold quality |
| blood | UBERON:0000178 | 81.44 | gold quality |
| upper leg skin | UBERON:0004262 | 81.11 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 80.86 | gold quality |
| amniotic fluid | UBERON:0000173 | 80.52 | gold quality |
| small intestine | UBERON:0002108 | 80.26 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.40 |
| E-MTAB-7606 | no | 1080.02 |
| E-GEOD-100618 | no | 436.44 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
31 targeting CRACR2A, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-9718 | 99.94 | 68.91 | 918 |
| HSA-MIR-3682-5P | 99.93 | 67.97 | 1163 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-3059-5P | 99.70 | 69.93 | 2491 |
| HSA-MIR-545-5P | 99.66 | 70.18 | 2308 |
| HSA-MIR-1287-3P | 99.63 | 66.93 | 492 |
| HSA-MIR-6126 | 99.62 | 68.09 | 996 |
| HSA-MIR-6758-3P | 99.57 | 67.55 | 1078 |
| HSA-MIR-18A-3P | 99.56 | 65.68 | 1092 |
| HSA-MIR-7159-5P | 99.53 | 72.12 | 2472 |
| HSA-MIR-4316 | 99.37 | 65.75 | 1360 |
| HSA-MIR-8070 | 99.07 | 69.30 | 1303 |
| HSA-MIR-3619-5P | 99.00 | 68.87 | 2308 |
| HSA-MIR-421 | 98.90 | 67.04 | 1883 |
| HSA-MIR-3124-3P | 98.87 | 68.95 | 2123 |
| HSA-MIR-214-3P | 98.71 | 68.12 | 2128 |
| HSA-MIR-761 | 98.71 | 68.07 | 2051 |
| HSA-MIR-4700-5P | 98.63 | 67.43 | 1915 |
| HSA-MIR-628-5P | 98.36 | 67.74 | 844 |
| HSA-MIR-8089 | 97.74 | 66.21 | 1698 |
| HSA-MIR-3144-5P | 97.64 | 65.45 | 646 |
| HSA-MIR-4667-5P | 97.61 | 66.67 | 1683 |
| HSA-MIR-1910-5P | 97.42 | 66.36 | 844 |
| HSA-MIR-3616-3P | 96.96 | 65.45 | 983 |
| HSA-MIR-874-5P | 96.93 | 63.92 | 1014 |
| HSA-MIR-3126-5P | 96.87 | 65.83 | 912 |
| HSA-MIR-6875-5P | 96.87 | 65.49 | 958 |
| HSA-MIR-3907 | 96.76 | 65.04 | 662 |
Literature-anchored findings (GeneRIF, showing 7)
- CRACR2A interacts directly with Orai1 and STIM1, forming a ternary complex that dissociates at elevated Ca(2+) concentrations; is a key regulator of CRAC channel-mediated SOCE (PMID:20418871)
- endothelial cells contain a long variant of CRACR2A which is an EF-hand-containing Rab protein that lacks impact on CRAC channels (PMID:25475730)
- GTP binding and prenylation of CRACR2A were associated with its localization near the Golgi and its stability (PMID:27016526)
- Results show the characterization of CRACR2A protein which encodes a large Rab GTPase containing multiple functional domains contrary to small Rab GTPases. It was found to play an unexpected role in regulating intracellular signaling pathways important for T cell activation. (PMID:27221160)
- There is a significant association between the EFCAB4B gene and localized periodontitis. (PMID:30284742)
- Vigorous physical activity before diagnosis is associated with epigenetic alterations of CRACR2A and prostate cancer metastatic-lethal progression. (PMID:30464020)
- These data demonstrate for the first time that a Rab GTPase, Rab46, integrates G protein and Ca(2+) signals to couple on-demand histamine signals to selective Weibel-Palade bodies (WPBs) trafficking. (PMID:31092558)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cracr2ab | ENSDARG00000045758 |
| danio_rerio | CRACR2A | ENSDARG00000068231 |
| mus_musculus | Cracr2a | ENSMUSG00000061414 |
| rattus_norvegicus | Cracr2a | ENSRNOG00000053449 |
Paralogs (1): CRACR2B (ENSG00000177685)
Protein
Protein identifiers
EF-hand calcium-binding domain-containing protein 4B — Q9BSW2 (reviewed: Q9BSW2)
Alternative names: Calcium release-activated calcium channel regulator 2A, Calcium release-activated channel regulator 2A, Ras-related protein Rab-46
All UniProt accessions (3): Q9BSW2, H0YFI5, H7BXT2
UniProt curated annotations — full annotation on UniProt →
Function. Ca(2+)-binding protein that plays a key role in store-operated Ca(2+) entry (SOCE) in T-cells by regulating CRAC channel activation. Acts as a cytoplasmic calcium-sensor that facilitates the clustering of ORAI1 and STIM1 at the junctional regions between the plasma membrane and the endoplasmic reticulum upon low Ca(2+) concentration. It thereby regulates CRAC channel activation, including translocation and clustering of ORAI1 and STIM1. Upon increase of cytoplasmic Ca(2+) resulting from opening of CRAC channels, dissociates from ORAI1 and STIM1, thereby destabilizing the ORAI1-STIM1 complex. Rab GTPase that mediates the trafficking of Weibel-Palade bodies (WPBs) to microtubule organizing center (MTOC) in endothelial cells in response to acute inflammatory stimuli. During histamine (but not thrombin) stimulation of endothelial cells, the dynein-bound form induces retrograde transport of a subset of WPBs along microtubules to the MTOC in a Ca(2+)-independent manner and its GTPase activity is essential for this function. Ca(2+)-regulated dynein adapter protein that activates dynein-mediated transport and dynein-dynactin motility on microtubules and regulates endosomal trafficking of CD47. Acts as an intracellular signaling module bridging two important T-cell receptor (TCR) signaling pathways, Ca(2+)-NFAT and JNK, to affect T-cell activation. In resting T-cells, is predominantly localized near TGN network in a GTP-bound form, upon TCR stimulation, localizes at the immunological synapse via interaction with VAV1 to activate downstream Ca(2+)-NFAT and JNK signaling pathways. Plays a role in T-helper 1 (Th1) cell differentiation and T-helper 17 (Th17) cell effector function. Plays a role in store-operated Ca(2+) entry (SOCE) in T-cells by regulating CRAC channel activation.
Subunit / interactions. Interacts with ORAI1 and STIM1; the interaction is direct and takes place in absence of Ca(2+). Forms a complex with ORAI1 and STIM1 at low concentration of Ca(2+), the complex dissociates at elevated Ca(2+) concentrations. Interacts with ORAI2 and ORAI3. Interacts with DYNC1H1. Interacts with the dynein-dynactin complex in a Ca(2+)-dependent manner. Interacts with VAV1.
Subcellular location. Cytoplasm Cytoplasm. Cytoplasm. Cytoskeleton. Microtubule organizing center. Cell membrane. Golgi apparatus membrane. Golgi apparatus. trans-Golgi network membrane. Vesicle.
Tissue specificity. Expressed in the Jurkat T-cell line. Expressed in endothelial cells. Expressed in Weibel-Palade bodies (which are P-selectin/SELP negative) in endothelial cells. Expressed in the Jurkat T-cell line.
Similarity. Belongs to the EFCAB4 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9BSW2-2 | 2, CRACR2A-L, CRACR2A-A | yes |
| Q9BSW2-1 | 1, CRACR2A-S, CRACR2A-C |
RefSeq proteins (2): NP_001138430, NP_116069 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001806 | Small_GTPase | Family |
| IPR002048 | EF_hand_dom | Domain |
| IPR005225 | Small_GTP-bd | Domain |
| IPR011992 | EF-hand-dom_pair | Homologous_superfamily |
| IPR018247 | EF_Hand_1_Ca_BS | Binding_site |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR050227 | Rab | Family |
Pfam: PF00071, PF13499
Catalyzed reactions (Rhea), 1 shown:
- GTP + H2O = GDP + phosphate + H(+) (RHEA:19669)
UniProt features (58 total): binding site 22, mutagenesis site 9, region of interest 6, sequence variant 6, helix 5, strand 3, splice variant 2, chain 1, domain 1, lipid moiety-binding region 1, sequence conflict 1, coiled-coil region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6PSD | X-RAY DIFFRACTION | 2.66 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BSW2-F1 | 70.34 | 0.36 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (22): 99; 101; 103; 108; 554; 556; 557; 558; 559; 559; 560; 571 …
Post-translational modifications (1): 729
Mutagenesis-validated functional residues (9):
| Position | Phenotype |
|---|---|
| 63 | loss of calcium-binding and interaction with the dynein-dynactin complex; when associated with a-65; a-97 and a-99. |
| 65 | loss of calcium-binding and interaction with the dynein-dynactin complex; when associated with a-63; a-97 and a-99. |
| 97–99 | in ef2mut; enhanced stim1 clustering and elevated cytoplasmic ca2+, thereby causing cell death in t-cells. loss of calci |
| 97 | loss of calcium-binding and interaction with the dynein-dynactin complex; when associated with a-63; a-65 and a-99. |
| 99 | loss of calcium-binding and interaction with the dynein-dynactin complex; when associated with a-63; a-65 and a-97. |
| 559 | gdp-binding mutant with reduced gtpase activity and protein stability. reduced ability to activate jnk signaling pathway |
| 604 | gtp-binding mutant with reduced gtpase activity but increased protein stability. increased ability to activate jnk signa |
| 658 | gtp/gdp-binding defective mutant with reduced gtpase activity and protein stability. failure to localize to the microtub |
| 729–731 | failure to localize to the golgi membrane. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-6798695 | Neutrophil degranulation |
MSigDB gene sets: 118 (showing top):
GSE37336_LY6C_POS_VS_NEG_NAIVE_CD4_TCELL_UP, GOBP_POSITIVE_REGULATION_OF_CALCIUM_ION_TRANSPORT, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_POSITIVE_REGULATION_OF_CATION_CHANNEL_ACTIVITY, GOCC_SECRETORY_GRANULE, GOBP_T_CELL_ACTIVATION_INVOLVED_IN_IMMUNE_RESPONSE, GOBP_POSITIVE_REGULATION_OF_TRANSPORTER_ACTIVITY, GOBP_ALPHA_BETA_T_CELL_DIFFERENTIATION, GOZGIT_ESR1_TARGETS_DN, GOBP_POSITIVE_REGULATION_OF_MAPK_CASCADE, GOBP_VESICLE_MEDIATED_TRANSPORT, CAGCTG_AP4_Q5, GOBP_POSITIVE_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, GOCC_MICROTUBULE_ORGANIZING_CENTER
GO Biological Process (13): store-operated calcium entry (GO:0002115), adaptive immune response (GO:0002250), intracellular protein localization (GO:0008104), vesicle-mediated transport (GO:0016192), endosomal transport (GO:0016197), activation of store-operated calcium channel activity (GO:0032237), response to histamine (GO:0034776), T-helper 1 cell differentiation (GO:0045063), positive regulation of JNK cascade (GO:0046330), positive regulation of calcium ion transport (GO:0051928), immune system process (GO:0002376), monoatomic ion transport (GO:0006811), calcium ion transport (GO:0006816)
GO Molecular Function (8): GTPase activity (GO:0003924), G protein activity (GO:0003925), calcium ion binding (GO:0005509), GTP binding (GO:0005525), nucleotide binding (GO:0000166), protein binding (GO:0005515), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)
GO Cellular Component (14): Golgi membrane (GO:0000139), immunological synapse (GO:0001772), extracellular region (GO:0005576), cytoplasm (GO:0005737), microtubule organizing center (GO:0005815), plasma membrane (GO:0005886), membrane (GO:0016020), vesicle (GO:0031982), trans-Golgi network membrane (GO:0032588), Weibel-Palade body (GO:0033093), specific granule lumen (GO:0035580), Golgi apparatus (GO:0005794), cytoskeleton (GO:0005856), specific granule (GO:0042581)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Innate Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| calcium ion transport | 2 |
| transport | 2 |
| secretory granule | 2 |
| immune response | 1 |
| macromolecule localization | 1 |
| cellular process | 1 |
| vesicle-mediated transport | 1 |
| intracellular transport | 1 |
| positive regulation of store-operated calcium channel activity | 1 |
| response to nitrogen compound | 1 |
| alpha-beta T cell activation involved in immune response | 1 |
| T cell differentiation involved in immune response | 1 |
| T-helper 1 type immune response | 1 |
| T-helper cell differentiation | 1 |
| JNK cascade | 1 |
| positive regulation of MAPK cascade | 1 |
| regulation of JNK cascade | 1 |
| positive regulation of monoatomic ion transport | 1 |
| regulation of calcium ion transport | 1 |
| biological_process | 1 |
| metal ion transport | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| GTPase activity | 1 |
| molecular function regulator activity | 1 |
| metal ion binding | 1 |
| guanyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| Golgi apparatus | 1 |
| bounding membrane of organelle | 1 |
| plasma membrane | 1 |
| intracellular anatomical structure | 1 |
| microtubule cytoskeleton | 1 |
| membrane | 1 |
| cell periphery | 1 |
Protein interactions and networks
STRING
818 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CRACR2A | STIM1 | Q13586 | 922 |
| CRACR2A | ORAI1 | Q96D31 | 766 |
| CRACR2A | SARAF | Q96BY9 | 745 |
| CRACR2A | STIMATE | Q86TL2 | 698 |
| CRACR2A | EFHB | Q8N7U6 | 619 |
| CRACR2A | C11orf97 | A0A1B0GVM6 | 583 |
| CRACR2A | STIM2 | Q9P246 | 558 |
| CRACR2A | CALM1 | P02593 | 530 |
| CRACR2A | BICDL1 | Q6ZP65 | 490 |
| CRACR2A | ORAI2 | Q96SN7 | 482 |
| CRACR2A | SLC35G1 | Q2M3R5 | 480 |
| CRACR2A | BICDL2 | A1A5D9 | 466 |
| CRACR2A | RAB11FIP3 | O75154 | 457 |
| CRACR2A | ORAI3 | Q9BRQ5 | 456 |
| CRACR2A | ASPH | Q12797 | 447 |
IntAct
158 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ORAI1 | STIM1 | psi-mi:“MI:0914”(association) | 0.960 |
| TLE5 | CRACR2A | psi-mi:“MI:0915”(physical association) | 0.670 |
| CRACR2A | TLE5 | psi-mi:“MI:0915”(physical association) | 0.670 |
| CLUAP1 | CRACR2A | psi-mi:“MI:0915”(physical association) | 0.590 |
| ORAI1 | CRACR2A | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| CRACR2A | ORAI1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| ORAI1 | CRACR2A | psi-mi:“MI:0915”(physical association) | 0.590 |
| CRACR2A | Hoxa1 | psi-mi:“MI:0915”(physical association) | 0.570 |
| MKRN3 | CRACR2A | psi-mi:“MI:0915”(physical association) | 0.560 |
| CRACR2A | NOTCH2NLA | psi-mi:“MI:0915”(physical association) | 0.560 |
| CDC23 | CRACR2A | psi-mi:“MI:0915”(physical association) | 0.560 |
| CRACR2A | MKRN3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NOTCH2NLA | CRACR2A | psi-mi:“MI:0915”(physical association) | 0.560 |
| CRACR2A | LRIF1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CRACR2A | SLAIN1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TRAF1 | CRACR2A | psi-mi:“MI:0915”(physical association) | 0.560 |
| SORBS3 | CRACR2A | psi-mi:“MI:0915”(physical association) | 0.560 |
| DDIT3 | CRACR2A | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRT75 | CRACR2A | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (82): CRACR2A (Two-hybrid), CRACR2A (Two-hybrid), CRACR2A (Two-hybrid), NOTCH2NL (Two-hybrid), CRACR2A (Affinity Capture-MS), EIF1AX (Affinity Capture-MS), MCPH1 (Affinity Capture-MS), CRACR2A (Two-hybrid), CRACR2A (PCA), Hoxa1 (Affinity Capture-Western), CRACR2A (Affinity Capture-MS), CRACR2A (Affinity Capture-MS), MCPH1 (Affinity Capture-MS), PLS1 (Affinity Capture-MS), CRACR2A (Two-hybrid)
ESM2 similar proteins: A0JMQ7, A0JP75, A1A600, A2BGP7, B1A193, B1WBU8, B2RPU2, G9G127, H2MTR9, O88869, Q0VFN8, Q2TAA8, Q32LC2, Q3ULW6, Q3UP38, Q4R7V1, Q4V7B0, Q5EB20, Q5JU67, Q5PQQ9, Q5RDE3, Q5U4W1, Q5XIR4, Q61043, Q6AXZ4, Q6IP02, Q6IQY5, Q6IRU7, Q6NRK1, Q6NRX3, Q6PA69, Q6ZQ12, Q7Z3E5, Q86YF9, Q86YS3, Q8BIJ7, Q8BQP8, Q8CGZ2, Q8CJ96, Q8K342
Diamond homologs: A0JP75, A1A600, B0BNK9, Q3UP38, Q7Z6P3, Q80ZJ8, Q8CB87, Q8N4Y2, Q9BSW2, Q619T5, A4FV54, A5WW21, C4YL11, F1PTE3, O24466, O42819, P07560, P0CY30, P0CY31, P10536, P11620, P16976, P17609, P17610, P20790, P20791, P22125, P22127, P22128, P24409, P28186, P28187, P28188, P31584, P33723, P34139, P34140, P35280, P35286, P36861
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
159 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 119 |
| Likely benign | 9 |
| Benign | 19 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1047901 | GRCh37/hg19 12p13.32(chr12:3619010-5221363) | Pathogenic |
SpliceAI
4741 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:3615439:CCT:C | acceptor_loss | 1.0000 |
| 12:3615440:C:CC | acceptor_gain | 1.0000 |
| 12:3615441:T:G | acceptor_loss | 1.0000 |
| 12:3617029:TCC:T | acceptor_loss | 1.0000 |
| 12:3617031:C:CC | acceptor_gain | 1.0000 |
| 12:3617031:C:G | acceptor_loss | 1.0000 |
| 12:3617032:T:C | acceptor_loss | 1.0000 |
| 12:3619222:C:A | donor_gain | 1.0000 |
| 12:3619371:TCCTG:T | acceptor_loss | 1.0000 |
| 12:3619373:C:CG | acceptor_loss | 1.0000 |
| 12:3619374:T:A | acceptor_loss | 1.0000 |
| 12:3627430:GCTCA:G | donor_loss | 1.0000 |
| 12:3627431:CTCA:C | donor_loss | 1.0000 |
| 12:3627432:TCA:T | donor_loss | 1.0000 |
| 12:3627433:CACCT:C | donor_loss | 1.0000 |
| 12:3627434:A:C | donor_loss | 1.0000 |
| 12:3654205:GACTC:G | donor_loss | 1.0000 |
| 12:3654206:ACTCA:A | donor_loss | 1.0000 |
| 12:3654207:C:CG | donor_loss | 1.0000 |
| 12:3654208:TCACA:T | donor_loss | 1.0000 |
| 12:3654209:CAC:C | donor_loss | 1.0000 |
| 12:3654210:A:AC | donor_gain | 1.0000 |
| 12:3654210:A:AG | donor_loss | 1.0000 |
| 12:3654211:C:CA | donor_gain | 1.0000 |
| 12:3654211:CAT:C | donor_gain | 1.0000 |
| 12:3654211:CATCT:C | donor_gain | 1.0000 |
| 12:3654212:ATCT:A | donor_gain | 1.0000 |
| 12:3654215:T:TA | donor_gain | 1.0000 |
| 12:3654395:TCCAG:T | acceptor_gain | 1.0000 |
| 12:3654396:CCAG:C | acceptor_gain | 1.0000 |
AlphaMissense
4825 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:3617001:G:C | S688R | 0.993 |
| 12:3617001:G:T | S688R | 0.993 |
| 12:3617003:T:G | S688R | 0.993 |
| 12:3680299:A:C | F93L | 0.993 |
| 12:3680299:A:T | F93L | 0.993 |
| 12:3680301:A:G | F93L | 0.993 |
| 12:3627643:T:G | D600A | 0.992 |
| 12:3627647:A:G | W599R | 0.991 |
| 12:3627647:A:T | W599R | 0.991 |
| 12:3627495:A:C | Y625D | 0.989 |
| 12:3627644:C:G | D600H | 0.989 |
| 12:3627643:T:A | D600V | 0.988 |
| 12:3680251:G:C | F109L | 0.988 |
| 12:3680251:G:T | F109L | 0.988 |
| 12:3680253:A:G | F109L | 0.988 |
| 12:3633666:T:A | K558M | 0.987 |
| 12:3633685:C:G | G552R | 0.987 |
| 12:3680252:A:G | F109S | 0.987 |
| 12:3633669:C:T | G557E | 0.986 |
| 12:3633684:C:A | G552V | 0.986 |
| 12:3680267:A:G | L104P | 0.986 |
| 12:3619328:C:A | K659N | 0.985 |
| 12:3619328:C:G | K659N | 0.985 |
| 12:3619331:A:C | N658K | 0.985 |
| 12:3619331:A:T | N658K | 0.985 |
| 12:3627642:G:C | D600E | 0.985 |
| 12:3627642:G:T | D600E | 0.985 |
| 12:3633667:T:G | K558Q | 0.985 |
| 12:3633669:C:A | G557V | 0.985 |
| 12:3627453:A:G | W639R | 0.984 |
dbSNP variants (sampled 300 via entrez): RS1000029054 (12:3732915 C>A,G,T), RS1000033142 (12:3743243 T>A), RS1000070178 (12:3725178 C>T), RS1000107562 (12:3744429 T>A), RS1000169471 (12:3638956 G>A), RS1000185441 (12:3720042 C>T), RS1000194428 (12:3697811 T>A), RS1000221973 (12:3723475 C>T), RS1000232502 (12:3679707 G>A,T), RS1000271139 (12:3710680 C>A,T), RS1000285487 (12:3636608 A>C), RS1000294996 (12:3645282 G>A,C), RS1000299566 (12:3632690 C>A,G), RS1000393544 (12:3685842 G>A), RS1000422729 (12:3713798 G>A)
Disease associations
OMIM: gene MIM:614178 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| combined immunodeficiency | Limited | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| combined immunodeficiency | Limited | AR |
Mondo (2): microcephaly (MONDO:0001149), combined immunodeficiency (MONDO:0015131)
Orphanet (0):
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000252 | Microcephaly |
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000412_4 | Male infertility | 4.000000e-06 |
| GCST000766_9 | Non-alcoholic fatty liver disease histology (lobular) | 8.000000e-07 |
| GCST001272_5 | Cytomegalovirus antibody response | 5.000000e-06 |
| GCST002248_9 | Fasting insulin (dietary factor interaction) | 8.000000e-06 |
| GCST002253_1 | Homeostasis model assessment of insulin resistance (dietary factor interaction) | 9.000000e-06 |
| GCST007197_1 | Chronic periodontitis (localised) | 2.000000e-08 |
| GCST012490_378 | Femur bone mineral density x serum urate levels interaction | 3.000000e-08 |
| GCST90026413_2 | Severe insulin-deficient type 2 diabetes | 4.000000e-06 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008111 | diet measurement |
| EFO:0004501 | HOMA-IR |
| EFO:0004531 | urate measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3638353 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
56 measured of 56 human assays (56 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]phenyl]-3-fluoropyridine-4-carboxamide | IC50 | 20.4 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-fluorophenyl]-5-methyl-1,2-oxazole-4-carboxamide | IC50 | 20.8 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[6-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-pyridinyl]-2-methylbenzamide | IC50 | 23 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-fluorophenyl]-2,3-difluorobenzamide | IC50 | 32.6 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| 4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-N-(4-methyl-1,3-thiazol-5-yl)benzamide | IC50 | 34.1 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-fluorophenyl]-4-methylthiadiazole-5-carboxamide | IC50 | 35.7 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-(3,5-dicyclopropylpyrazol-1-yl)phenyl]-2-methylbenzamide | IC50 | 36.4 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[6-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-pyridinyl]-3-fluoropyridine-4-carboxamide | IC50 | 37.6 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[6-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-pyridinyl]pyridine-3-carboxamide | IC50 | 47.2 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| 4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-N-[(4-methyl-1,3-thiazol-5-yl)methyl]aniline | IC50 | 48 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-fluorophenyl]-4-methyl-1,3-thiazole-5-carboxamide | IC50 | 48.2 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]phenyl]-2-pyridin-3-ylacetamide | IC50 | 48.2 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[6-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-pyridinyl]-2,6-difluorobenzamide | IC50 | 50.6 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-(difluoromethyl)-3-(trifluoromethyl)pyrazol-1-yl]phenyl]-4-methyl-1,3-thiazole-5-carboxamide | IC50 | 52.6 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[6-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-pyridinyl]-2-fluorobenzamide | IC50 | 60 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-(3,5-dicyclopropylpyrazol-1-yl)-3-fluorophenyl]-4-methylthiadiazole-5-carboxamide | IC50 | 60.3 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-(3,5-dicyclopropylpyrazol-1-yl)phenyl]-4-methylthiadiazole-5-carboxamide | IC50 | 62.4 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[6-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-pyridinyl]pyridine-4-carboxamide | IC50 | 62.6 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]phenyl]-5-methyl-1,2-oxazole-4-carboxamide | IC50 | 63.2 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| 3,5-dichloro-N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]phenyl]pyridine-4-carboxamide | IC50 | 65.5 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[6-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-pyridinyl]-2,3-difluorobenzamide | IC50 | 70.3 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]phenyl]-4-methyl-1,3-thiazole-5-carboxamide | IC50 | 72 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| 6-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-N-(2,6-difluorophenyl)pyridine-3-carboxamide | IC50 | 72.1 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-fluorophenyl]-4-methylpyrimidine-5-carboxamide | IC50 | 81.2 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-fluorophenyl]-2,6-difluorobenzamide | IC50 | 98.6 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| 4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-N-(2,6-difluorophenyl)-3-fluorobenzamide | IC50 | 99.7 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]phenyl]-2-methylbenzamide | IC50 | 120 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| 4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-N-(2,6-difluorophenyl)benzamide | IC50 | 124 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]phenyl]-3,5-dimethyl-1,2-oxazole-4-carboxamide | IC50 | 124 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| 3,5-dichloro-N-[4-(3,5-dicyclopropylpyrazol-1-yl)phenyl]pyridine-4-carboxamide | IC50 | 130 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-(3,5-dicyclopropylpyrazol-1-yl)phenyl]pyridine-4-carboxamide | IC50 | 141 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-(3,5-dicyclopropylpyrazol-1-yl)-3-fluorophenyl]-2,6-difluorobenzamide | IC50 | 145 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-fluorophenyl]-2-methylbenzamide | IC50 | 147 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[6-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-pyridinyl]-4-methylthiadiazole-5-carboxamide | IC50 | 150 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-fluorophenyl]-3-fluoropyridine-4-carboxamide | IC50 | 159 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| 3,5-dichloro-N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-fluorophenyl]pyridine-4-carboxamide | IC50 | 159 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-(4-chloro-3,5-dicyclopropylpyrazol-1-yl)-3-fluorophenyl]-4-methylthiadiazole-5-carboxamide | IC50 | 181 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]phenyl]-4-methylthiadiazole-5-carboxamide | IC50 | 184 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-(3,5-dicyclopropylpyrazol-1-yl)-3-fluorophenyl]pyridine-4-carboxamide | IC50 | 185 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[4-chloro-5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]phenyl]-4-methyl-1,3-thiazole-5-carboxamide | IC50 | 194 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-fluorophenyl]pyridine-3-carboxamide | IC50 | 206 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-(3,5-dicyclopropylpyrazol-1-yl)phenyl]-4-methyl-1,3-thiazole-5-carboxamide | IC50 | 207 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-(3,5-dicyclopropylpyrazol-1-yl)-3-fluorophenyl]-4-methylpyrimidine-5-carboxamide | IC50 | 224 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]-3-fluorophenyl]pyridine-4-carboxamide | IC50 | 232 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-(3,5-dicyclopropylpyrazol-1-yl)phenyl]-3-fluoropyridine-4-carboxamide | IC50 | 244 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]phenyl]pyridine-4-carboxamide | IC50 | 255 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-(3,5-dicyclopropylpyrazol-1-yl)phenyl]-5-methyl-1,2-oxazole-4-carboxamide | IC50 | 256 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| 1-[4-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]phenyl]-3-(4-methyl-1,3-thiazol-5-yl)urea | IC50 | 269 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[2-[5-cyclopropyl-3-(trifluoromethyl)pyrazol-1-yl]pyrimidin-5-yl]-2,6-difluorobenzamide | IC50 | 295 nM | US-8921364: Modulators of calcium release-activated calcium channel |
| N-[4-[5-(fluoromethyl)-3-(trifluoromethyl)pyrazol-1-yl]phenyl]-4-methyl-1,3-thiazole-5-carboxamide | IC50 | 373 nM | US-8921364: Modulators of calcium release-activated calcium channel |
ChEMBL bioactivities
56 potent at pChembl≥5 of 56 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.69 | IC50 | 20.37 | nM | CHEMBL3666849 |
| 7.68 | IC50 | 20.79 | nM | CHEMBL3666859 |
| 7.64 | IC50 | 22.96 | nM | CHEMBL3666871 |
| 7.49 | IC50 | 32.59 | nM | CHEMBL3666861 |
| 7.47 | IC50 | 34.11 | nM | CHEMBL3666854 |
| 7.45 | IC50 | 35.72 | nM | CHEMBL3666857 |
| 7.44 | IC50 | 36.35 | nM | CHEMBL3666830 |
| 7.42 | IC50 | 37.58 | nM | CHEMBL3666877 |
| 7.33 | IC50 | 47.21 | nM | CHEMBL3666875 |
| 7.32 | IC50 | 48.22 | nM | CHEMBL3666851 |
| 7.32 | IC50 | 48.02 | nM | CHEMBL3666852 |
| 7.32 | IC50 | 48.17 | nM | CHEMBL3666858 |
| 7.30 | IC50 | 50.58 | nM | CHEMBL3666874 |
| 7.28 | IC50 | 52.62 | nM | CHEMBL3666881 |
| 7.22 | IC50 | 60.31 | nM | CHEMBL3639657 |
| 7.22 | IC50 | 60 | nM | CHEMBL3666872 |
| 7.21 | IC50 | 62.44 | nM | CHEMBL3666827 |
| 7.20 | IC50 | 63.17 | nM | CHEMBL3666845 |
| 7.20 | IC50 | 62.56 | nM | CHEMBL3666876 |
| 7.18 | IC50 | 65.49 | nM | CHEMBL3666842 |
| 7.15 | IC50 | 70.32 | nM | CHEMBL3666873 |
| 7.14 | IC50 | 72.03 | nM | CHEMBL3666844 |
| 7.14 | IC50 | 72.11 | nM | CHEMBL3666878 |
| 7.09 | IC50 | 81.25 | nM | CHEMBL3666867 |
| 7.01 | IC50 | 98.58 | nM | CHEMBL3666862 |
| 7.00 | IC50 | 99.71 | nM | CHEMBL3666869 |
| 6.92 | IC50 | 119.7 | nM | CHEMBL3666847 |
| 6.91 | IC50 | 124.5 | nM | CHEMBL3666846 |
| 6.91 | IC50 | 123.8 | nM | CHEMBL3666855 |
| 6.89 | IC50 | 129.6 | nM | CHEMBL3666833 |
| 6.85 | IC50 | 141.3 | nM | CHEMBL3666831 |
| 6.84 | IC50 | 145.1 | nM | CHEMBL3666836 |
| 6.83 | IC50 | 147.2 | nM | CHEMBL3666860 |
| 6.83 | IC50 | 149.6 | nM | CHEMBL3666870 |
| 6.80 | IC50 | 159.1 | nM | CHEMBL3666865 |
| 6.80 | IC50 | 159.3 | nM | CHEMBL3666866 |
| 6.74 | IC50 | 181.1 | nM | CHEMBL3666839 |
| 6.74 | IC50 | 183.6 | nM | CHEMBL3666843 |
| 6.73 | IC50 | 184.6 | nM | CHEMBL3666837 |
| 6.71 | IC50 | 194 | nM | CHEMBL3666856 |
| 6.69 | IC50 | 205.7 | nM | CHEMBL3666863 |
| 6.68 | IC50 | 206.7 | nM | CHEMBL3666828 |
| 6.65 | IC50 | 223.5 | nM | CHEMBL3666838 |
| 6.63 | IC50 | 232 | nM | CHEMBL3666864 |
| 6.61 | IC50 | 243.9 | nM | CHEMBL3666832 |
| 6.59 | IC50 | 256.1 | nM | CHEMBL3666829 |
| 6.59 | IC50 | 254.7 | nM | CHEMBL3666848 |
| 6.57 | IC50 | 269 | nM | CHEMBL3666853 |
| 6.53 | IC50 | 295.4 | nM | CHEMBL3666879 |
| 6.43 | IC50 | 373.4 | nM | CHEMBL3666880 |
CTD chemical–gene interactions
26 total (human), top 26 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Aflatoxin B1 | increases methylation | 2 |
| aristolochic acid I | decreases expression | 1 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| beta-lapachone | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| potassium chromate(VI) | increases expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| pentanal | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| entinostat | increases expression | 1 |
| abrine | decreases expression | 1 |
| 2,3,5-trichloro-6-phenyl-(1,4)benzoquinone | increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Fulvestrant | increases methylation, affects cotreatment | 1 |
| Ethyl Methanesulfonate | decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Methapyrilene | increases methylation | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Vanadates | decreases expression | 1 |
| Antirheumatic Agents | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3705678 | Binding | In-Vitro Inhibition Assay: Inhibition of CRAC channels was determined following thapsigargin (Sigma, Cat # T9033) induced endoplasmic calcium release in Jurkat cells. (see Yasurio Yonetoky et. al Bio. & Med. Chem. 14 (2006) 4750-4760). Cell | Modulators of calcium release-activated calcium channel |
Clinical trials (associated diseases)
21 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02737384 | PHASE2 | TERMINATED | Hematopoietic Stem Cells Transplantation in Children With Combined Immunodeficiency (CID) |
| NCT02915406 | Not specified | NO_LONGER_AVAILABLE | cliniMACs HUD for T Cell Depletion |
| NCT04902807 | Not specified | RECRUITING | Conception of a Diagnosis, Prognosis and Therapeutic Decision Tool for Patients With Autoimmunity and Inflammation |
| NCT06659588 | Not specified | RECRUITING | Study of Populations at Risk of Developing Chronic Hepatitis Linked to Chronic Enteric Virus Infection in Patients With Primary Immunodeficiency and Secondary Humoral Deficiency |
| NCT05518188 | PHASE1/PHASE2 | RECRUITING | Melpida: Recombinant Adeno-associated Virus (serotype 9) Encoding a Codon Optimized Human AP4M1 Transgene (hAP4M1opt) |
| NCT00001639 | Not specified | COMPLETED | Evaluation of Patients With Unresolved Chromosome Abnormalities |
| NCT01151462 | Not specified | WITHDRAWN | Postnatal HCMV Infection in Very Preterm Infants. Implications, Morbidity, Growth and Neurodevelopmental Outcomes. |
| NCT01565005 | Not specified | COMPLETED | Microcephaly Genetic Deficiency in Neural Progenitors |
| NCT02510170 | Not specified | COMPLETED | Fetal and Maternal Head Circumference During Pregnancy in Israeli Population |
| NCT02741882 | Not specified | COMPLETED | Zika and Microcephaly: Case-control Study |
| NCT02943304 | Not specified | COMPLETED | Neurodevelopment Outcome of Newborns Exposed to Zika Virus (ZIKV) in Utero |
| NCT03255369 | Not specified | UNKNOWN | Vertical Exposure to Zika Virus and Its Consequences for Child Neurodevelopment (ZIKVIRUSIFF) |
| NCT03325946 | Not specified | RECRUITING | The FBRI VTC Neuromotor Research Clinic |
| NCT03330600 | Not specified | COMPLETED | Efficacy of Aquatic Physiotherapy in Children With Microcephaly by Zika Virus Congenital Syndrome |
| NCT03548779 | Not specified | COMPLETED | North Carolina Genomic Evaluation by Next-generation Exome Sequencing, 2 |
| NCT03651687 | Not specified | COMPLETED | Guangzhou Surveillance and Clinical Study in Microcephaly (GSCSM) |
| NCT03922594 | Not specified | TERMINATED | Surveillance of Zika-related Microcephaly in Sub-Saharan Africa and Asia |
| NCT04816175 | Not specified | COMPLETED | Intensive Therapy for Children With Microcephaly, Hyperkinetic Movements, or Global Developmental Delay |
| NCT05322980 | Not specified | COMPLETED | Summary of Infants Weighing 500 Grams or Less |
| NCT06019182 | Not specified | RECRUITING | MEHMO Natural History and Biomarkers |
| NCT06566066 | Not specified | RECRUITING | Register for Patients With Thyroid Hormone Resistance. |
Related Atlas pages
- Associated diseases: combined immunodeficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cirrhosis of liver, combined immunodeficiency, male infertility, metabolic dysfunction-associated steatotic liver disease