CRB1
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Also known as LCA8
Summary
CRB1 (crumbs cell polarity complex component 1, HGNC:2343) is a protein-coding gene on chromosome 1q31.3, encoding Protein crumbs homolog 1 (P82279). Plays a role in photoreceptor morphogenesis in the retina.
This gene encodes a protein which is similar to the Drosophila crumbs protein and localizes to the inner segment of mammalian photoreceptors. In Drosophila crumbs localizes to the stalk of the fly photoreceptor and may be a component of the molecular scaffold that controls proper development of polarity in the eye. Mutations in this gene are associated with a severe form of retinitis pigmentosa, RP12, and with Leber congenital amaurosis. Alternate splicing results in multiple transcript variants, some protein coding and some non-protein coding.
Source: NCBI Gene 23418 — RefSeq curated summary.
At a glance
- Gene–disease (curated): inherited retinal dystrophy (Definitive, ClinGen) — +7 more curated relationships
- GWAS associations: 24
- Clinical variants (ClinVar): 2,218 total — 265 pathogenic, 224 likely-pathogenic
- Phenotypes (HPO): 69
- MANE Select transcript:
NM_201253
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2343 |
| Approved symbol | CRB1 |
| Name | crumbs cell polarity complex component 1 |
| Location | 1q31.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LCA8 |
| Ensembl gene | ENSG00000134376 |
| Ensembl biotype | protein_coding |
| OMIM | 604210 |
| Entrez | 23418 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 9 protein_coding, 2 protein_coding_CDS_not_defined, 1 retained_intron, 1 nonsense_mediated_decay
ENST00000367397, ENST00000367399, ENST00000367400, ENST00000448952, ENST00000475659, ENST00000476483, ENST00000480086, ENST00000484075, ENST00000535699, ENST00000538660, ENST00000638467, ENST00000681519, ENST00000946298
RefSeq mRNA: 4 — MANE Select: NM_201253
NM_001193640, NM_001257965, NM_001257966, NM_201253
CCDS: CCDS1390, CCDS53454, CCDS58052, CCDS58053
Canonical transcript exons
ENST00000367400 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000959562 | 197356831 | 197357013 |
| ENSE00000959564 | 197427454 | 197428001 |
| ENSE00000959565 | 197429449 | 197429614 |
| ENSE00000959566 | 197434706 | 197435612 |
| ENSE00002349541 | 197442166 | 197442292 |
| ENSE00002725400 | 197438547 | 197438675 |
| ENSE00003500204 | 197421000 | 197421956 |
| ENSE00003519398 | 197344281 | 197344476 |
| ENSE00003540072 | 197347340 | 197347479 |
| ENSE00003575422 | 197328422 | 197329003 |
| ENSE00003665813 | 197477664 | 197478455 |
| ENSE00003844961 | 197268252 | 197268482 |
Expression profiles
Bgee: expression breadth ubiquitous, 163 present calls, max score 90.26.
FANTOM5 (CAGE): breadth broad, TPM avg 4.0459 / max 209.7555, expressed in 817 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 7517 | 1.9304 | 746 |
| 7520 | 1.8891 | 195 |
| 7519 | 0.1027 | 47 |
| 7518 | 0.0685 | 36 |
| 7521 | 0.0237 | 3 |
| 7523 | 0.0195 | 4 |
| 7522 | 0.0120 | 2 |
Top tissues by expression
271 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ganglionic eminence | UBERON:0004023 | 90.26 | gold quality |
| ventricular zone | UBERON:0003053 | 89.30 | gold quality |
| endothelial cell | CL:0000115 | 87.33 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 81.73 | gold quality |
| cerebellar cortex | UBERON:0002129 | 81.56 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 81.15 | gold quality |
| amygdala | UBERON:0001876 | 80.90 | gold quality |
| caudate nucleus | UBERON:0001873 | 80.75 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 80.25 | gold quality |
| cingulate cortex | UBERON:0003027 | 80.14 | gold quality |
| cerebellum | UBERON:0002037 | 80.09 | gold quality |
| right frontal lobe | UBERON:0002810 | 79.18 | gold quality |
| nucleus accumbens | UBERON:0001882 | 78.77 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 78.67 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 77.65 | gold quality |
| primary visual cortex | UBERON:0002436 | 76.90 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 76.84 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 76.83 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 76.39 | gold quality |
| putamen | UBERON:0001874 | 76.38 | gold quality |
| Ammon’s horn | UBERON:0001954 | 75.95 | gold quality |
| temporal lobe | UBERON:0001871 | 75.92 | gold quality |
| telencephalon | UBERON:0001893 | 75.92 | gold quality |
| corpus callosum | UBERON:0002336 | 75.90 | gold quality |
| neocortex | UBERON:0001950 | 75.83 | gold quality |
| prefrontal cortex | UBERON:0000451 | 75.54 | gold quality |
| cerebral cortex | UBERON:0000956 | 75.31 | gold quality |
| frontal cortex | UBERON:0001870 | 74.54 | gold quality |
| cortical plate | UBERON:0005343 | 74.52 | gold quality |
| embryo | UBERON:0000922 | 74.28 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-93593 | yes | 8.17 |
| E-MTAB-6108 | no | 144.57 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
58 targeting CRB1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-450B-5P | 99.92 | 71.48 | 3175 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
| HSA-MIR-3681-3P | 99.88 | 70.46 | 2254 |
| HSA-MIR-8080 | 99.82 | 67.52 | 1342 |
| HSA-MIR-4639-5P | 99.81 | 67.37 | 1028 |
| HSA-MIR-4516 | 99.61 | 67.78 | 3390 |
| HSA-MIR-7152-5P | 99.60 | 69.33 | 2094 |
Literature-anchored findings (GeneRIF, showing 40)
- intracellular domain of CRB1 behaves similarly to its Drosophila counterpart when overexpressed in the fly eye (PMID:11850624)
- Mutation disrupting the cytoplasmic domain of CRB1 is associated with Leber congenital amaurosis in arabs (PMID:12567265)
- REVIEW–overview of the currently known CRB1 sequence variants and prediction of their effects: a genotype-phenotype correlation model for CRB1 mutations (PMID:15459956)
- The PPCRA (Pigmented paravenous chorioretinal atrophy) phenotype is associated with a Val162Met mutation in CRB1 which is likely to affect the structure of the CRB1 protein. (PMID:15623792)
- AIPL1, CRB1, GUCY2D, RPE65, and RPGRIP1 mutations may have roles in juvenile retinitis pigmentosa (PMID:16272259)
- Microarray-based mutation detection allowed the identification of 32% of LCA sequence variants and represents an efficient first-pass screening tool. Mutations in CRB1, and to a lesser extent, in GUCY2D, underlie most LCA cases in this cohort (PMID:16505055)
- Mutation in CRB1 is co-inherited with high hyperopia and Leber congenital amau (PMID:16543197)
- In human heterozygotes of CRB1 mutations (parents of offspring with Leber congenital amaurosis), distinctive regional retinal dysfunctions were found by multifocal ERG (electroretinography) measurements (PMID:16936081)
- overexpression of human CRB1 and related isoforms, CRB2 and CRB3, had no effect on the levels of presenilin complex components, on NCT maturation or on presenilin endoproteolysis (PMID:17988153)
- Two distinct retinal dystrophies with mutations affecting two different genes ABCA4 and CRB1 genes cosegregated in this family. (PMID:18334942)
- This study presents the case of a compound heterozygous fetus for two mutations in CRB1 (1q3.1-q32.2). (PMID:18682814)
- Although the results cannot exclude other gene mutations, they suggest that LCA patients with a CRB1 mutation may have a particular susceptibility to keratoconus. (PMID:19407021)
- The corneas of human carriers of CRB1 mutations display shape deviations compared with what has been observed in normal individuals (PMID:20805571)
- Mutations in CRB1 are associated with a range of recessively inherited retinal dystrophies, including Leber congenital amaurosis, childhood- and juvenile-onset rod-cone and cone-rod dystrophies. (PMID:20956273)
- CRB1 mutations lead to early-onset severe loss of vision with thickened, disorganized, nonseeing retina. Impaired peripheral vision can persist in late disease stages. (PMID:21757580)
- A review of seven novel mutations and classification of over 150 reported CRB1 sequence variants that were found in more that 240 patients with inherited retinal dystrophies. (PMID:22065545)
- Digenic and triallelic mutations of CRB1 and SPATA7 were detected in a Chinese family with Leber congenital amaurosis. The results imply that CRB1 and SPATA7 may not interact with each other directly. (PMID:22219627)
- Mutation in CRB1 gene is associated with Stargardt Disease. (PMID:22863181)
- CRB1 (c.2548 G>A) is the likely disease-causing gene in one non-consanguineous Australian pedigree with autosomal recessive retinitis pigmentosa. (PMID:22876132)
- there is no clear genotype-phenotype correlation for CRB1 mutations, which suggests that other components of the CRB complex may influence the severity of retinal disease (PMID:23001562)
- A novel homozygous missense mutation (p.Gly833Asp) in the CRB1 gene is responsible for retinitis pigmentosa, nanophthalmos, and optic disc drusen in a Turkish family. (PMID:23077403)
- We report a novel CRB1 mutation in inherited retinal dystrophy in a Lebanese family. (PMID:23362850)
- study represents the most complete mutational screening of CRB1 in a Spanish LCA and EORP cohort, allowing us to establish gene-specific frequencies and to provide a wide spectrum of CRB1 mutations in the Spanish population (PMID:23379534)
- Four patients with Leber congenital amaurosis were homozygous for a novel mutation in the CRB1 gene, while of two cases with Stargardt disease, one was homozygous for c.5461-10T>C in the ABCA4 gene and another was carrier of the same mutation. (PMID:23443024)
- we showed that mutations in CRB1 are a common cause of eary onset retinal degeneration among the Jewish and Arab-Muslim populations in Israel and the Palestinian Territories (PMID:23449718)
- R764H is a novel mutation associated with CRB1-related autosomal recessive retinitis pigmentosa. (PMID:23592920)
- The phenotypic spectrum of recessive CRB1 mutation includes childhood cone-rod dystrophy with macular cystic degeneration and the associated ERG can be electronegative. (PMID:23767994)
- We report the case of a 15-year-old girl affected by CRB1 gene-negative retinitis pigmentosa and Coats-like exudative vasculopathy (PMID:23871396)
- Retinal degenerations associated with nanophthalmos and hyperopia, or with keratoconus, can serve as further clinical cues to mutations in CRB1. (PMID:24138049)
- the mammalian apical CRB1 complex might control retinogenesis and prevents onset of Leber congenital amaurosis or retinitis pigmentosa. (PMID:24508727)
- CRB1 mutations may be associated with intraretinal cystoid spaces. The use of carbonic anhydrase inhibitors can result in improved visual acuity in some patients. (PMID:24512366)
- Macular nummular pigmentation is a gene-specific indication for CRB1associated retinal dystrophy. (PMID:24535598)
- Study showed that CRB1 and CRB2 in human retinas have an opposite pattern of expression in Muller glia and photoreceptor cells compared with mouse retinas, and that Crb2 influences the severity of the murine Crb1-linked retinal dystrophies. (PMID:24565864)
- Mutations in CRB1 and ABCA4 were found in a Swedish family with Leber congenital amaurosis and Stargardt disease. (PMID:24664696)
- The results from this study show that patients with Leber congenital amaurosis carry CRB1 null mutations more frequently than patients with retinitis pigmentosa. (PMID:24715753)
- This report illustrates a novel presentation of a macular dystrophy caused by CRB1 mutations affecting 2 siblings exhibiting a relatively well-developed retinal structure and preservation of generalized retinal function. (PMID:24811962)
- The phenotypes of these novel mutations for early-onset retinal dystrophy (EORD) are typical of CRB1-associated EORD (PMID:25323024)
- Removal of this side chain enhances the binding affinity by more than fivefold, suggesting that access of Crb to Pals1 may be regulated by intradomain contacts or by protein-protein interaction. (PMID:25760605)
- Two novel variants were detected: c.2536G>T (p.G846X) in the CRB1 gene and c.4929delA (p.Lys1643fsX2) in the CEP290 gene. (PMID:26165328)
- Comprehensive retinal dystrophy panel revealed a homozygous mutation in CRB1 (p.Pro836Thr:c.2506C>A) in both twins. (PMID:26312378)
Cross-species orthologs
10 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | crb1 | ENSDARG00000100506 |
| mus_musculus | Crb1 | ENSMUSG00000063681 |
| rattus_norvegicus | Crb1 | ENSRNOG00000010903 |
| drosophila_melanogaster | uif | FBGN0031879 |
| caenorhabditis_elegans | WBGENE00000792 | |
| caenorhabditis_elegans | WBGENE00008194 | |
| caenorhabditis_elegans | WBGENE00012134 | |
| caenorhabditis_elegans | WBGENE00013118 | |
| caenorhabditis_elegans | WBGENE00018547 | |
| caenorhabditis_elegans | WBGENE00018607 |
Protein
Protein identifiers
Protein crumbs homolog 1 — P82279 (reviewed: P82279)
All UniProt accessions (6): A0A075B6G4, A0A0C4DG35, A0A7D6VLH9, A0A7D6VM04, F5H0L2, P82279
UniProt curated annotations — full annotation on UniProt →
Function. Plays a role in photoreceptor morphogenesis in the retina. May maintain cell polarization and adhesion.
Subunit / interactions. Component of a complex composed of PALS1, CRB1 and EPB41L5. Within the complex, interacts (via intracellular domain) with PALS1 and EPB41L5 (via FERM domain). Forms a complex with MPP4 and PALS1. Interacts with MPDZ/MUPP1 and MPP4.
Subcellular location. Apical cell membrane. Secreted. Cell projection. Cilium. Photoreceptor outer segment. Photoreceptor inner segment Secreted.
Tissue specificity. Preferential expression in retina, also expressed in brain, testis, fetal brain and fetal eye. Expressed at the outer limiting membrane and apical to adherens junctions in the retina.
Post-translational modifications. Extensively glycosylated.
Disease relevance. CRB1 mutations have been found in various retinal dystrophies, chronic and disabling disorders of visual function. They predominantly involve the posterior portion of the ocular fundus, due to degeneration in the sensory layer of the retina, retinal pigment epithelium, Bruch membrane, choroid, or a combination of these tissues. Onset of inherited retinal dystrophies is painless, bilateral and typically progressive. Most people experience gradual peripheral vision loss or tunnel vision, and difficulties with poor illumination and night vision. Central vision is usually unaffected, so the person may still be able to read. However, it can also deteriorate to cause total blindness. Examples of retinal dystrophies are retinitis pigmentosa, Leber congenital amaurosis, cone-rod dystrophy among others. Retinitis pigmentosa 12 (RP12) [MIM:600105] A retinal dystrophy belonging to the group of pigmentary retinopathies. Retinitis pigmentosa is characterized by retinal pigment deposits visible on fundus examination and primary loss of rod photoreceptor cells followed by secondary loss of cone photoreceptors. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. RP12 is an autosomal recessive, severe form often manifesting in early childhood. Patients experiment progressive visual field loss with severe visual impairment before the age of twenty. Some patients have a preserved paraarteriolar retinal pigment epithelium (PPRPE) and hypermetropia. The disease is caused by variants affecting the gene represented in this entry. Leber congenital amaurosis 8 (LCA8) [MIM:613835] A severe dystrophy of the retina, typically becoming evident in the first years of life. Visual function is usually poor and often accompanied by nystagmus, sluggish or near-absent pupillary responses, photophobia, high hyperopia and keratoconus. The disease is caused by variants affecting the gene represented in this entry. Pigmented paravenous chorioretinal atrophy (PPCRA) [MIM:172870] Unusual retinal degeneration characterized by accumulation of pigmentation along retinal veins. PPCRA is dominantly inherited, but exhibited variable expressivity. Males are more likely to exhibit a severe phenotype, whereas females may remain virtually asymptomatic even in later years. The PPCRA phenotype is associated with a mutation in CRB1 gene which is likely to affect the structure of the CRB1 protein. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the Crumbs protein family.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P82279-1 | 1 | yes |
| P82279-2 | 2 | |
| P82279-3 | 3 | |
| P82279-4 | 4 | |
| P82279-5 | 5 |
RefSeq proteins (4): NP_001180569, NP_001244894, NP_001244895, NP_957705* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000152 | EGF-type_Asp/Asn_hydroxyl_site | PTM |
| IPR000742 | EGF | Domain |
| IPR001791 | Laminin_G | Domain |
| IPR001881 | EGF-like_Ca-bd_dom | Domain |
| IPR009030 | Growth_fac_rcpt_cys_sf | Homologous_superfamily |
| IPR013032 | EGF-like_CS | Conserved_site |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR018097 | EGF_Ca-bd_CS | Conserved_site |
Pfam: PF00008, PF02210, PF12661
UniProt features (220 total): sequence variant 99, disulfide bond 59, glycosylation site 23, domain 22, splice variant 7, topological domain 2, mutagenesis site 2, signal peptide 1, chain 1, turn 1, strand 1, region of interest 1, transmembrane region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4UU5 | X-RAY DIFFRACTION | 1.23 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P82279-F1 | 75.19 | 0.14 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (59): 1202–1211, 1218–1229, 1223–1238, 1240–1249, 1259–1274, 1268–1283, 1285–1294, 1301–1312, 1306–1321, 1323–1332, 34–45, 39–54, 56–67, 74–85, 79–96, 98–107, 114–125, 119–134, 136–145, 152–163 …
Glycosylation sites (23): 30, 41, 42, 215, 287, 313, 322, 418, 427, 453, 550, 561, 657, 757, 871, 880, 968, 975, 1000, 1190 …
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 1377–1379 | abolishes interaction with epb41l5. no effection on interaction wtih pals1. |
| 1403–1406 | abolishes interaction with pals1. not required for interaction with epb41l5. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 258 (showing top):
MODULE_92, GOBP_HETEROPHILIC_CELL_CELL_ADHESION, GOBP_ESTABLISHMENT_OR_MAINTENANCE_OF_CELL_POLARITY, GCANCTGNY_MYOD_Q6, GOBP_CELLULAR_RESPONSE_TO_LIGHT_STIMULUS, GOBP_PLASMA_MEMBRANE_ORGANIZATION, GOBP_NEUROGENESIS, FOXO4_01, GOBP_NEURAL_RETINA_DEVELOPMENT, FOXO1_01, ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_UP, CAGCTG_AP4_Q5, GOBP_CELL_CELL_SIGNALING, GOBP_CELL_CELL_ADHESION, GOBP_ESTABLISHMENT_OF_CELL_POLARITY
GO Biological Process (26): blood vessel remodeling (GO:0001974), plasma membrane organization (GO:0007009), heterophilic cell-cell adhesion (GO:0007157), establishment or maintenance of cell polarity (GO:0007163), cell-cell signaling (GO:0007267), intracellular protein localization (GO:0008104), glial cell differentiation (GO:0010001), gene expression (GO:0010467), retina layer formation (GO:0010842), photoreceptor cell outer segment organization (GO:0035845), establishment or maintenance of epithelial cell apical/basal polarity (GO:0045197), photoreceptor cell maintenance (GO:0045494), detection of light stimulus involved in visual perception (GO:0050908), post-embryonic retina morphogenesis in camera-type eye (GO:0060060), establishment of bipolar cell polarity involved in cell morphogenesis (GO:0061159), camera-type eye photoreceptor cell development (GO:0062139), cellular response to light stimulus (GO:0071482), retina homeostasis (GO:0001895), cell communication (GO:0007154), visual perception (GO:0007601), signaling (GO:0023052), photoreceptor cell development (GO:0042461), eye photoreceptor cell development (GO:0042462), retina development in camera-type eye (GO:0060041), retina morphogenesis in camera-type eye (GO:0060042), membrane organization (GO:0061024)
GO Molecular Function (2): calcium ion binding (GO:0005509), protein binding (GO:0005515)
GO Cellular Component (15): photoreceptor outer segment (GO:0001750), photoreceptor inner segment (GO:0001917), extracellular region (GO:0005576), plasma membrane (GO:0005886), microvillus (GO:0005902), adherens junction (GO:0005912), apical plasma membrane (GO:0016324), protein-containing complex (GO:0032991), subapical complex (GO:0035003), apical junction complex (GO:0043296), glial cell projection (GO:0097386), cell-cell junction (GO:0005911), membrane (GO:0016020), cell projection (GO:0042995), apical part of cell (GO:0045177)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| cellular process | 2 |
| retina morphogenesis in camera-type eye | 2 |
| cell-cell junction | 2 |
| tissue remodeling | 1 |
| endomembrane system organization | 1 |
| membrane organization | 1 |
| cell-cell adhesion | 1 |
| cell communication | 1 |
| signaling | 1 |
| macromolecule localization | 1 |
| cell differentiation | 1 |
| gliogenesis | 1 |
| macromolecule biosynthetic process | 1 |
| neural retina development | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| cellular component organization | 1 |
| photoreceptor cell development | 1 |
| establishment or maintenance of apical/basal cell polarity | 1 |
| retina homeostasis | 1 |
| multicellular organismal process | 1 |
| visual perception | 1 |
| detection of light stimulus involved in sensory perception | 1 |
| post-embryonic animal morphogenesis | 1 |
| cell morphogenesis | 1 |
| establishment of bipolar cell polarity | 1 |
| eye photoreceptor cell development | 1 |
| camera-type eye development | 1 |
| response to light stimulus | 1 |
| cellular response to radiation | 1 |
| tissue homeostasis | 1 |
| sensory perception of light stimulus | 1 |
| metal ion binding | 1 |
| binding | 1 |
| photoreceptor cell cilium | 1 |
| membrane | 1 |
| cell periphery | 1 |
| actin filament bundle | 1 |
| actin-based cell projection | 1 |
| apical part of cell | 1 |
Protein interactions and networks
STRING
1029 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CRB1 | PALS1 | Q8N3R9 | 997 |
| CRB1 | PATJ | Q8NI35 | 993 |
| CRB1 | EPB41 | P11171 | 656 |
| CRB1 | CRB3 | Q9BUF7 | 634 |
| CRB1 | PARD3 | Q8TEW0 | 584 |
| CRB1 | MSN | P26038 | 552 |
| CRB1 | FRMD6 | Q96NE9 | 540 |
| CRB1 | SCRIB | Q14160 | 499 |
| CRB1 | LLGL2 | Q6P1M3 | 447 |
| CRB1 | KIF3A | Q9Y496 | 441 |
| CRB1 | KCNT2 | Q6UVM3 | 420 |
| CRB1 | ASPM | Q8IZT6 | 368 |
| CRB1 | A0A096LNW4 | A0A096LNW4 | 354 |
| CRB1 | B3GALT2 | O43825 | 348 |
| CRB1 | RAB14 | P35287 | 348 |
IntAct
32 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CRB1 | PALS1 | psi-mi:“MI:0915”(physical association) | 0.780 |
| PALS1 | CRB1 | psi-mi:“MI:0407”(direct interaction) | 0.780 |
| CRB1 | PALS1 | psi-mi:“MI:0403”(colocalization) | 0.780 |
| CRB1 | PALS1 | psi-mi:“MI:0914”(association) | 0.780 |
| CRB1 | PALS1 | psi-mi:“MI:0914”(association) | 0.630 |
| CRB1 | PALS1 | psi-mi:“MI:0915”(physical association) | 0.630 |
| C1QBP | DDX6 | psi-mi:“MI:0915”(physical association) | 0.620 |
| CRB1 | EPB41L5 | psi-mi:“MI:0915”(physical association) | 0.570 |
| MPP4 | CRB1 | psi-mi:“MI:0915”(physical association) | 0.520 |
| CRB1 | EPB41L5 | psi-mi:“MI:0915”(physical association) | 0.500 |
| PATJ | CRB1 | psi-mi:“MI:0915”(physical association) | 0.500 |
| YWHAE | HNRNPA1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| C1QBP | RPS3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| EIF4ENIF1 | RPLP0 | psi-mi:“MI:0915”(physical association) | 0.400 |
| EIF4ENIF1 | PABPC1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CRB1 | EPB41L4B | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRB1 | MSN | psi-mi:“MI:0915”(physical association) | 0.370 |
| ALB | F2 | psi-mi:“MI:0914”(association) | 0.350 |
| TSC22D1 | CRB1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| PSMD13 | CRB1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| PRKAR1A | CRB1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| CD2BP2 | CRB1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| CRB1 | DDX56 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (14): CRB1 (Affinity Capture-MS), CRB1 (Affinity Capture-MS), MIB1 (Affinity Capture-Western), EPB41L5 (Affinity Capture-Western), CRB1 (Co-localization), CRB1 (Affinity Capture-MS), CRB1 (Affinity Capture-RNA), CRB1 (Proximity Label-MS), CRB1 (Affinity Capture-RNA), CRB1 (Affinity Capture-MS), CRB1 (Affinity Capture-RNA), HSP90AA1 (Cross-Linking-MS (XL-MS)), CRB1 (Co-fractionation), CRB1 (Affinity Capture-MS)
ESM2 similar proteins: A0A2K5V015, A1YIY0, A8MUZ8, A8MWA4, B8JI71, O08569, P01133, P0DJ43, P14370, P14585, P17630, P19070, P48357, P82279, P97435, Q07444, Q0D2K5, Q28066, Q28660, Q29RU2, Q4KUS1, Q5G872, Q5R6R1, Q5RCW9, Q5T1H1, Q5UKY4, Q5Z5Q3, Q60736, Q63515, Q63722, Q6DFV8, Q6GMZ9, Q6V0K7, Q6ZN79, Q7TSY4, Q811Q4, Q8N2E2, Q8VHS2, Q90Y54, Q95MI4
Diamond homologs: A1A5Y0, A2VCU8, A4IGL7, A5A8Y8, A6QR11, B5DFC9, O75095, O88322, P07996, P10493, P14585, P35441, P35448, P82279, P98118, Q14112, Q20911, Q24025, Q28178, Q2PC93, Q2VWQ2, Q3MHH9, Q5FW85, Q5R3Z7, Q61220, Q62918, Q62919, Q6AZ60, Q6GUQ1, Q6MG84, Q75N90, Q7T3Q2, Q7ZXL5, Q80T14, Q8AVH7, Q8AWW5, Q8VHS2, Q90827, Q90ZD5, Q91X17
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
2218 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 265 |
| Likely pathogenic | 224 |
| Uncertain significance | 706 |
| Likely benign | 729 |
| Benign | 30 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1039551 | NM_201253.3(CRB1):c.1522T>C (p.Cys508Arg) | Pathogenic |
| 1068576 | NM_201253.3(CRB1):c.2942_2943del (p.Arg981fs) | Pathogenic |
| 1069427 | NM_201253.3(CRB1):c.1974_1990del (p.Ser659fs) | Pathogenic |
| 1069458 | NM_201253.3(CRB1):c.1078_1081del (p.Glu360fs) | Pathogenic |
| 1070332 | NM_201253.3(CRB1):c.2767G>T (p.Glu923Ter) | Pathogenic |
| 1070751 | NM_201253.3(CRB1):c.3134del (p.Leu1045fs) | Pathogenic |
| 1071809 | NM_201253.3(CRB1):c.3860del (p.Pro1287fs) | Pathogenic |
| 1072460 | NM_201253.3(CRB1):c.2818C>T (p.Gln940Ter) | Pathogenic |
| 1073128 | NM_201253.3(CRB1):c.3887del (p.Lys1296fs) | Pathogenic |
| 1073987 | NM_201253.3(CRB1):c.718C>T (p.Gln240Ter) | Pathogenic |
| 1074341 | NM_201253.3(CRB1):c.1700G>A (p.Trp567Ter) | Pathogenic |
| 1074495 | NM_201253.3(CRB1):c.4005+1G>C | Pathogenic |
| 1074853 | NM_201253.3(CRB1):c.962_966del (p.Asp321fs) | Pathogenic |
| 1075122 | NM_201253.3(CRB1):c.3325dup (p.Tyr1109fs) | Pathogenic |
| 1075887 | NM_201253.3(CRB1):c.770dup (p.Asp257fs) | Pathogenic |
| 1076361 | NC_000001.10:g.(?197407677)(197411422_?)del | Pathogenic |
| 1076362 | NC_000001.10:g.(?197297542)(197326153_?)del | Pathogenic |
| 1076902 | NM_201253.3(CRB1):c.4006-1G>T | Pathogenic |
| 1172709 | NM_201253.3(CRB1):c.2630_2631dup (p.Leu878fs) | Pathogenic |
| 1190977 | NM_201253.3(CRB1):c.3144del (p.Ser1049fs) | Pathogenic |
| 1213984 | NM_201253.3(CRB1):c.750T>A (p.Cys250Ter) | Pathogenic |
| 1275767 | NM_201253.3(CRB1):c.134_135del (p.Thr44_Cys45insTer) | Pathogenic |
| 1283919 | NM_201253.3(CRB1):c.20_23del (p.Asn7fs) | Pathogenic |
| 1298444 | NM_201253.3(CRB1):c.2118del (p.Cys707fs) | Pathogenic |
| 1349280 | NC_000001.10:g.(?197407491)(197411316_?)del | Pathogenic |
| 1358615 | NM_201253.3(CRB1):c.3102G>A (p.Trp1034Ter) | Pathogenic |
| 1364895 | NM_201253.3(CRB1):c.4142_4147del (p.Pro1381_Ser1382del) | Pathogenic |
| 1364997 | NM_201253.3(CRB1):c.852T>A (p.Tyr284Ter) | Pathogenic |
| 1369922 | NC_000001.10:g.(?197237324)(197326153_?)del | Pathogenic |
| 1373006 | NM_201253.3(CRB1):c.848+1G>A | Pathogenic |
SpliceAI
3243 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:197328968:G:GT | donor_gain | 1.0000 |
| 1:197344266:T:A | acceptor_gain | 1.0000 |
| 1:197344279:A:AT | acceptor_loss | 1.0000 |
| 1:197344280:G:GA | acceptor_loss | 1.0000 |
| 1:197427439:A:AG | acceptor_gain | 1.0000 |
| 1:197427439:ATTTT:A | acceptor_gain | 1.0000 |
| 1:197427443:T:TA | acceptor_gain | 1.0000 |
| 1:197442293:G:GG | donor_gain | 1.0000 |
| 1:197268416:GCACT:G | donor_gain | 0.9900 |
| 1:197268483:G:GG | donor_gain | 0.9900 |
| 1:197328800:A:G | donor_gain | 0.9900 |
| 1:197329000:TCTGG:T | donor_loss | 0.9900 |
| 1:197329001:CTGG:C | donor_loss | 0.9900 |
| 1:197329002:TGG:T | donor_loss | 0.9900 |
| 1:197329005:T:TC | donor_loss | 0.9900 |
| 1:197344261:T:A | acceptor_gain | 0.9900 |
| 1:197344263:T:TA | acceptor_gain | 0.9900 |
| 1:197344276:A:AG | acceptor_gain | 0.9900 |
| 1:197344276:AAAAG:A | acceptor_gain | 0.9900 |
| 1:197344277:A:G | acceptor_gain | 0.9900 |
| 1:197344279:A:G | acceptor_gain | 0.9900 |
| 1:197344280:GGT:G | acceptor_gain | 0.9900 |
| 1:197344280:GGTGT:G | acceptor_gain | 0.9900 |
| 1:197344472:AACAG:A | donor_loss | 0.9900 |
| 1:197344473:ACAGG:A | donor_loss | 0.9900 |
| 1:197344474:CAG:C | donor_loss | 0.9900 |
| 1:197344475:AG:A | donor_loss | 0.9900 |
| 1:197344476:GG:G | donor_loss | 0.9900 |
| 1:197344477:GT:G | donor_loss | 0.9900 |
| 1:197344478:T:G | donor_loss | 0.9900 |
AlphaMissense
9362 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:197328919:T:A | C190S | 0.989 |
| 1:197328920:G:C | C190S | 0.989 |
| 1:197421887:T:A | C687S | 0.989 |
| 1:197421888:G:C | C687S | 0.989 |
| 1:197328898:T:A | C183S | 0.988 |
| 1:197328899:G:C | C183S | 0.988 |
| 1:197328899:G:A | C183Y | 0.984 |
| 1:197421266:T:A | C480S | 0.984 |
| 1:197421267:G:C | C480S | 0.984 |
| 1:197435014:T:A | W1051R | 0.984 |
| 1:197435014:T:C | W1051R | 0.984 |
| 1:197328934:T:A | C195S | 0.983 |
| 1:197328935:G:C | C195S | 0.983 |
| 1:197328899:G:T | C183F | 0.980 |
| 1:197328838:T:A | C163S | 0.978 |
| 1:197328839:G:C | C163S | 0.978 |
| 1:197328900:C:G | C183W | 0.977 |
| 1:197328952:T:A | C201S | 0.977 |
| 1:197328953:G:C | C201S | 0.977 |
| 1:197328872:G:A | C174Y | 0.976 |
| 1:197421887:T:C | C687R | 0.976 |
| 1:197421889:C:G | C687W | 0.976 |
| 1:197328871:T:A | C174S | 0.975 |
| 1:197328872:G:C | C174S | 0.975 |
| 1:197435016:G:C | W1051C | 0.975 |
| 1:197435016:G:T | W1051C | 0.975 |
| 1:197435237:T:C | F1125S | 0.973 |
| 1:197328919:T:C | C190R | 0.972 |
| 1:197435237:T:G | F1125C | 0.972 |
| 1:197421267:G:A | C480Y | 0.971 |
dbSNP variants (sampled 300 via entrez): RS1000011937 (1:197352560 C>G), RS1000022838 (1:197358791 C>G,T), RS1000035475 (1:197400658 C>G), RS1000036652 (1:197305687 G>A), RS1000057028 (1:197361277 T>G), RS1000064756 (1:197220600 C>G), RS1000070569 (1:197311697 TAGTG>T), RS1000072595 (1:197439751 C>T), RS1000076909 (1:197478695 C>T), RS1000089368 (1:197346426 T>A), RS1000106626 (1:197270216 T>C), RS1000112575 (1:197373239 C>T), RS1000115225 (1:197353923 A>G), RS1000128293 (1:197220042 AT>A,ATT), RS1000134263 (1:197472149 G>A,T)
Disease associations
OMIM: gene MIM:604210 | disease phenotypes: MIM:172870, MIM:600105, MIM:613835, MIM:204000, MIM:268000, MIM:120970, MIM:181500, MIM:248200, MIM:500004, MIM:611809, MIM:600059
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| retinitis pigmentosa 12 | Definitive | Autosomal recessive |
| Leber congenital amaurosis 8 | Definitive | Autosomal recessive |
| hereditary macular dystrophy | Definitive | Autosomal recessive |
| pigmented paravenous retinochoroidal atrophy | Supportive | Autosomal dominant |
| nanophthalmia | Supportive | Autosomal dominant |
| Leber congenital amaurosis | Supportive | Autosomal dominant |
| retinitis pigmentosa | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| inherited retinal dystrophy | Definitive | AR |
Mondo (20): pigmented paravenous retinochoroidal atrophy (MONDO:0008246), retinitis pigmentosa 12 (MONDO:0010818), Leber congenital amaurosis 8 (MONDO:0013453), Leber congenital amaurosis (MONDO:0018998), retinitis pigmentosa (MONDO:0019200), inherited retinal dystrophy (MONDO:0019118), cone-rod dystrophy (MONDO:0015993), schizophrenia (MONDO:0005090), severe early-childhood-onset retinal dystrophy (MONDO:0009549), hereditary macular dystrophy (MONDO:0020242), optic atrophy (MONDO:0003608), Leber congenital amaurosis 1 (MONDO:0008764), cone dystrophy (MONDO:0000455), intellectual disability (MONDO:0001071), Stargardt disease (MONDO:0019353)
Orphanet (12): Pigmented paravenous retinochoroidal atrophy (Orphanet:251295), Leber congenital amaurosis (Orphanet:65), Retinitis pigmentosa (Orphanet:791), OBSOLETE: Inherited retinal disorder (Orphanet:71862), Cone rod dystrophy (Orphanet:1872), Severe early-childhood-onset retinal dystrophy (Orphanet:364055), Stargardt disease (Orphanet:827), Progressive cone dystrophy (Orphanet:1871), Autosomal recessive bestrophinopathy (Orphanet:139455), NON RARE IN EUROPE: Schizophrenia (Orphanet:3140), OBSOLETE: Genetic macular dystrophy (Orphanet:98664), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
69 total (30 of 69 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000365 | Hearing impairment |
| HP:0000405 | Conductive hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000486 | Strabismus |
| HP:0000490 | Deeply set eye |
| HP:0000501 | Glaucoma |
| HP:0000505 | Visual impairment |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000512 | Abnormal electroretinogram |
| HP:0000518 | Cataract |
| HP:0000533 | Chorioretinal atrophy |
| HP:0000540 | Hypermetropia |
| HP:0000543 | Optic disc pallor |
| HP:0000546 | Retinal degeneration |
| HP:0000550 | Undetectable electroretinogram |
| HP:0000551 | Color vision defect |
| HP:0000563 | Keratoconus |
| HP:0000565 | Esotropia |
| HP:0000568 | Microphthalmia |
| HP:0000577 | Exotropia |
| HP:0000580 | Pigmentary retinopathy |
| HP:0000602 | Ophthalmoplegia |
| HP:0000610 | Abnormal choroid morphology |
| HP:0000613 | Photophobia |
| HP:0000618 | Blindness |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000662 | Nyctalopia |
GWAS associations
24 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000548_1 | Asthma | 2.000000e-13 |
| GCST000548_2 | Asthma | 9.000000e-11 |
| GCST002479_5 | Lupus nephritis in systemic lupus erythematosus | 5.000000e-06 |
| GCST003097_4 | Pediatric autoimmune diseases | 2.000000e-07 |
| GCST003989_6 | Chin dimples | 1.000000e-38 |
| GCST004131_92 | Inflammatory bowel disease | 4.000000e-11 |
| GCST004132_61 | Crohn’s disease | 5.000000e-11 |
| GCST004904_250 | Body mass index | 8.000000e-09 |
| GCST006624_13 | Systolic blood pressure | 6.000000e-11 |
| GCST006940_42 | Neurociticism | 2.000000e-09 |
| GCST006950_46 | Feeling worry | 8.000000e-13 |
| GCST006951_33 | Feeling hurt | 1.000000e-10 |
| GCST006979_964 | Heel bone mineral density | 3.000000e-17 |
| GCST008163_20 | Height | 4.000000e-06 |
| GCST010697_27 | Cortical surface area (min-P) | 2.000000e-08 |
| GCST010698_5 | Subcortical volume (min-P) | 5.000000e-08 |
| GCST010699_10 | Brain morphology (min-P) | 2.000000e-10 |
| GCST010700_57 | Cortical thickness (MOSTest) | 7.000000e-10 |
| GCST010701_135 | Cortical surface area (MOSTest) | 5.000000e-10 |
| GCST010702_59 | Subcortical volume (MOSTest) | 5.000000e-12 |
| GCST010703_246 | Brain morphology (MOSTest) | 1.000000e-11 |
| GCST012696_4 | Anorexia nervosa | 3.000000e-06 |
| GCST90013466_62 | Height | 2.000000e-06 |
| GCST90013468_30 | Height | 5.000000e-10 |
EFO canonical traits (8, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0006335 | systolic blood pressure |
| EFO:0007660 | neuroticism measurement |
| EFO:0009589 | worry measurement |
| EFO:0009599 | feeling emotionally hurt measurement |
| EFO:0009270 | heel bone mineral density |
| EFO:0004346 | neuroimaging measurement |
| EFO:0004840 | cortical thickness |
MeSH disease descriptors (13)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000077765 | Cone Dystrophy | C11.270.151; C11.768.216 |
| D000071700 | Cone-Rod Dystrophies | C11.270.152; C11.768.585.658.250; C16.320.290.152 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D057130 | Leber Congenital Amaurosis | C11.270.516; C11.768.364 |
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D012164 | Retinal Diseases | C11.768 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| D012174 | Retinitis Pigmentosa | C11.270.684; C11.768.585.658.500; C16.320.290.684 |
| D000080362 | Stargardt Disease | C11.270.872; C11.768.585.439.339; C16.320.290.724 |
| C567518 | Bestrophinopathy (supp.) | |
| C566801 | Pigmented Paravenous Chorioretinal Atrophy (supp.) | |
| C563999 | Retinitis Pigmentosa 12 (supp.) | |
| C564008 | Retinitis Pigmentosa 13 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
24 total (human), top 24 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 7 |
| Benzo(a)pyrene | affects methylation, decreases expression | 3 |
| methyleugenol | decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| ethyl-p-hydroxybenzoate | decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| benzo(e)pyrene | affects methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | decreases expression, decreases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment | 1 |
| belinostat | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| MRK 003 | increases expression | 1 |
| Lycopene | decreases expression | 1 |
| Vorinostat | increases expression | 1 |
| Lipopolysaccharides | decreases expression, decreases reaction | 1 |
| Methapyrilene | affects methylation | 1 |
| N-Nitrosopyrrolidine | decreases expression | 1 |
| Tetrachlorodibenzodioxin | increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Aflatoxin B1 | affects methylation | 1 |
| Okadaic Acid | decreases expression | 1 |
Cellosaurus cell lines
16 cell lines: 15 induced pluripotent stem cell, 1 embryonic stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A1ZA | ESi082-A | Induced pluripotent stem cell | Male |
| CVCL_A4DV | WAe009-A-38 | Embryonic stem cell | Female |
| CVCL_A8MG | LEIi016-A | Induced pluripotent stem cell | Male |
| CVCL_A8MH | LEIi016-B | Induced pluripotent stem cell | Male |
| CVCL_F1JI | LUMCi054-A | Induced pluripotent stem cell | Male |
| CVCL_F1JJ | LUMCi054-A-1 | Induced pluripotent stem cell | Male |
| CVCL_F1JK | LUMCi054-A-2 | Induced pluripotent stem cell | Male |
| CVCL_F1JL | LUMCi055-A | Induced pluripotent stem cell | Male |
| CVCL_F1JM | LUMCi056-A | Induced pluripotent stem cell | Male |
| CVCL_F1W9 | LUMCi054-A-3 | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
268 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00717080 | PHASE4 | COMPLETED | The Role of Capsular Tension Ring (CTR) in Anterior Capsular Contraction |
| NCT00999609 | PHASE3 | ACTIVE_NOT_RECRUITING | Safety and Efficacy Study in Subjects With Leber Congenital Amaurosis |
| NCT06891443 | PHASE3 | RECRUITING | Study to Evaluate Sepofarsen in Subjects With Leber Congenital Amaurosis (LCA) Type 10 (HYPERION) |
| NCT00000114 | PHASE3 | COMPLETED | Randomized Trial of Vitamin A and Vitamin E Supplementation for Retinitis Pigmentosa |
| NCT00000116 | PHASE3 | COMPLETED | Randomized Trial of DHA for Retinitis Pigmentosa Patients Receiving Vitamin A |
| NCT00346333 | PHASE3 | COMPLETED | Clinical Trial of Lutein for Patients With Retinitis Pigmentosa Receiving Vitamin A |
| NCT01786395 | PHASE3 | TERMINATED | Phase III Efficacy and Safety Clinical Study of UF-021 for Treatment of Retinitis Pigmentosa |
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT04636853 | PHASE3 | COMPLETED | CB-PRP in Retinitis Pigmentosa and Dry Age-related Macular Degeneration |
| NCT05537220 | PHASE3 | ACTIVE_NOT_RECRUITING | Oral N-acetylcysteine for Retinitis Pigmentosa |
| NCT05800301 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa Via Combination of Wharton’s Jelly-derived Mesenchymal Stem Cells and Magnovision |
| NCT05926583 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of AAV5-hRKp.RPGR for the Treatment of Japanese Participants With X-linked Retinitis Pigmentosa |
| NCT06388200 | PHASE3 | ACTIVE_NOT_RECRUITING | A Phase 3 Study Of OCU400 Gene Therapy for the Treatment Of Retinitis Pigmentosa |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT07290530 | PHASE3 | NOT_YET_RECRUITING | 24-Month Trial of NPI-001 for the Preservation of Photoreceptors in Retinitis Pigmentosa Associated With Usher Syndrome |
| NCT00100230 | PHASE2 | COMPLETED | DHA and X-Linked Retinitis Pigmentosa |
| NCT00447980 | PHASE2 | COMPLETED | A Study of Encapsulated Cell Technology (ECT) Implant for Participants With Early Stage Retinitis Pigmentosa |
| NCT00447993 | PHASE2 | COMPLETED | A Study of Encapsulated Cell Technology (ECT) Implant for Patients With Late Stage Retinitis Pigmentosa |
| NCT01233609 | PHASE2 | COMPLETED | Trial of Oral Valproic Acid for Retinitis Pigmentosa |
| NCT01399515 | PHASE2 | COMPLETED | Efficacy and Safety of Oral Valproic Acid for Retinitis Pigmentosa |
| NCT01530659 | PHASE2 | COMPLETED | Retinal Imaging in CNTF -Releasing Encapsulated Cell Implant Treated Patients for Early-stage Retinitis Pigmentosa |
| NCT01560715 | PHASE2 | COMPLETED | Autologous Bone Marrow-Derived Stem Cells Transplantation For Retinitis Pigmentosa |
| NCT02609165 | PHASE2 | COMPLETED | Nerve Growth Factor Eye Drops Treatment in Patients With Retinitis Pigmentosa and Cystoid Macular Edema |
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| NCT02837640 | PHASE2 | UNKNOWN | Studying a Potential Protective Effect of L-Dopa on Retinitis Pigmentosa |
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Related Atlas pages
- Associated diseases: retinitis pigmentosa 12, Leber congenital amaurosis 8, pigmented paravenous retinochoroidal atrophy, nanophthalmia, Leber congenital amaurosis, retinitis pigmentosa 1, hereditary macular dystrophy, inherited retinal dystrophy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autoimmune disease, autoimmune thyroid disease, autosomal recessive bestrophinopathy, common variable immunodeficiency, cone dystrophy, cone-rod dystrophy, hereditary macular dystrophy, juvenile idiopathic arthritis, Leber congenital amaurosis, Leber congenital amaurosis 1, Leber congenital amaurosis 8, lupus nephritis, nanophthalmia, pigmented paravenous retinochoroidal atrophy, retinal disorder, retinitis pigmentosa, retinitis pigmentosa 12, retinitis pigmentosa 13, retinitis pigmentosa-deafness syndrome, severe early-childhood-onset retinal dystrophy, Stargardt disease