CRBN

gene
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Also known as MRT2

Summary

CRBN (cereblon, HGNC:30185) is a protein-coding gene on chromosome 3p26.2, encoding Protein cereblon (Q96SW2). Substrate recognition component of a DCX (DDB1-CUL4-X-box) E3 protein ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins, such as MEIS2, ILF2 or GLUL. In precision oncology, CRBN Mutation is associated with resistance to Lenalidomide + Pomalidomide in Multiple Myeloma (CIViC Level C).

This gene encodes a protein related to the Lon protease protein family. In rodents and other mammals this gene product is found in the cytoplasm localized with a calcium channel membrane protein, and is thought to play a role in brain development. Mutations in this gene are associated with autosomal recessive nonsyndromic cognitive disability. Multiple transcript variants encoding different isoforms have been found for this gene.

Source: NCBI Gene 51185 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): intellectual disability (Moderate, ClinGen) — +2 more curated relationships
  • GWAS associations: 13
  • Clinical variants (ClinVar): 126 total — 5 pathogenic, 6 likely-pathogenic
  • Phenotypes (HPO): 10
  • Druggable target: yes — 18 molecules with ChEMBL bioactivity
  • Precision-oncology evidence (CIViC): 1 curated variant–drug association
  • MANE Select transcript: NM_016302

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:30185
Approved symbolCRBN
Namecereblon
Location3p26.2
Locus typegene with protein product
StatusApproved
AliasesMRT2
Ensembl geneENSG00000113851
Ensembl biotypeprotein_coding
OMIM609262
Entrez51185

Gene structure

Transcript identifiers

Ensembl transcripts: 25 — 16 protein_coding, 9 retained_intron

ENST00000231948, ENST00000424814, ENST00000432408, ENST00000450014, ENST00000459840, ENST00000478353, ENST00000480249, ENST00000482844, ENST00000488263, ENST00000491834, ENST00000492178, ENST00000498442, ENST00000498700, ENST00000639284, ENST00000866173, ENST00000866174, ENST00000866175, ENST00000866176, ENST00000866177, ENST00000925599, ENST00000925600, ENST00000925601, ENST00000925602, ENST00000970439, ENST00000970440

RefSeq mRNA: 2 — MANE Select: NM_016302 NM_001173482, NM_016302

CCDS: CCDS2562, CCDS54547

Canonical transcript exons

ENST00000231948 — 11 exons

ExonStartEnd
ENSE0000072092431547473154831
ENSE0000347298531562193156281
ENSE0000350730131751633175269
ENSE0000353738931500113151045
ENSE0000354632331676343167793
ENSE0000354890131524563152587
ENSE0000355134931727763172925
ENSE0000363788731539603154075
ENSE0000366035031534243153488
ENSE0000367524931740593174261
ENSE0000391043831796213179691

Expression profiles

Bgee: expression breadth ubiquitous, 288 present calls, max score 98.11.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 27.7755 / max 789.4488, expressed in 1798 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter IDTPM avgSamples expressed
4082227.77551798

Top tissues by expression

293 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
calcaneal tendonUBERON:000370198.11gold quality
Brodmann (1909) area 23UBERON:001355497.48gold quality
skin of hipUBERON:000155496.56gold quality
biceps brachiiUBERON:000150796.51gold quality
endothelial cellCL:000011596.50gold quality
skeletal muscle tissue of biceps brachiiUBERON:000450296.50gold quality
superficial temporal arteryUBERON:000161496.36gold quality
cauda epididymisUBERON:000436096.26gold quality
middle temporal gyrusUBERON:000277196.22gold quality
corpus callosumUBERON:000233696.21gold quality
postcentral gyrusUBERON:000258196.10gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047396.08gold quality
parietal pleuraUBERON:000240096.03gold quality
superior frontal gyrusUBERON:000266196.00gold quality
germinal epithelium of ovaryUBERON:000130495.85gold quality
dorsal root ganglionUBERON:000004495.77gold quality
entorhinal cortexUBERON:000272895.72gold quality
caput epididymisUBERON:000435895.67gold quality
upper leg skinUBERON:000426295.59gold quality
substantia nigra pars compactaUBERON:000196595.51gold quality
trabecular bone tissueUBERON:000248395.50gold quality
monocyteCL:000057695.49gold quality
sural nerveUBERON:001548895.47gold quality
skeletal muscle tissue of rectus abdominisUBERON:000451195.45gold quality
lateral nuclear group of thalamusUBERON:000273695.44gold quality
visceral pleuraUBERON:000240195.42gold quality
mononuclear cellCL:000084295.34gold quality
parietal lobeUBERON:000187295.34gold quality
seminal vesicleUBERON:000099895.24gold quality
leukocyteCL:000073895.21gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

ExperimentMarker?Max mean expression
E-ANND-3yes7.37
E-CURD-112yes6.74

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): NFE2L2

miRNA regulators (miRDB)

80 targeting CRBN, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-126-5P100.0072.713180
HSA-MIR-4533100.0069.482758
HSA-MIR-477599.9875.006394
HSA-MIR-569699.9872.364487
HSA-MIR-485-3P99.9870.681585
HSA-MIR-539-3P99.9870.741616
HSA-MIR-60799.9773.625593
HSA-MIR-23A-3P99.9574.243163
HSA-MIR-23B-3P99.9574.243163
HSA-MIR-23C99.9573.923192
HSA-MIR-55999.9572.283609
HSA-MIR-548AB99.9571.313488
HSA-MIR-144-3P99.9473.982698
HSA-MIR-548A-5P99.9471.273482
HSA-MIR-548AD-5P99.9471.233502
HSA-MIR-548AE-5P99.9471.233502
HSA-MIR-548AK99.9471.243488
HSA-MIR-548AM-5P99.9471.243488
HSA-MIR-548AP-5P99.9471.143489
HSA-MIR-548AQ-5P99.9471.343426
HSA-MIR-548AR-5P99.9471.283515
HSA-MIR-548AS-5P99.9471.223482
HSA-MIR-548AU-5P99.9471.243488
HSA-MIR-548AY-5P99.9471.233502
HSA-MIR-548B-5P99.9471.233502
HSA-MIR-548BB-5P99.9471.273509
HSA-MIR-548C-5P99.9471.243488
HSA-MIR-548D-5P99.9471.233502
HSA-MIR-548H-5P99.9471.243488
HSA-MIR-548I99.9471.253481

Literature-anchored findings (GeneRIF, showing 40)

  • A nonsense mutation causing a premature stop codon in CRBN was found in a large kindred with mild mental retardation. ATP-dependent degradation of proteins may play a role in memory and learning. (PMID:15557513)
  • This may suggest new functions of CRBN in cell nucleolus besides its mitochondria protease activity in cytoplasm. (PMID:17380424)
  • Nonsense mutation (R419X) CRBN disturbs the development of adult brain BK(Ca) isoforms. These changes are predicted to result in BK(Ca) channels with a higher intracellular Ca(2+) sensitivity, faster activation, and slower deactivation kinetics. (PMID:18414909)
  • The results suggest that mutCRBN may cause ARNSID by disrupting the developmental regulation of BK(Ca) in brain regions that are critical for memory and learning. (PMID:20131966)
  • CRBN directly interacts with the alpha1 subunit of AMP-activated protein kinase (AMPK alpha1) and inhibits the activation of AMPK activation. (PMID:21232561)
  • CRBN is an essential requirement for immunoregulatory drugs activity and a possible biomarker for the clinical assessment of antimyeloma efficacy. (PMID:21860026)
  • Data show that in a cereblon-dependent fashion, lenalidomide downregulates IRF4 and SPIB, transcription factors that together prevent IFNbeta production. (PMID:22698399)
  • These findings suggest that CRBN may modulate proteasome activity by directly interacting with the beta7 subunit. (PMID:23026050)
  • We conclude that CRBN expression may be associated with the clinical efficacy of thalidomide. (PMID:23233657)
  • We investigated the role of CRBN in response to lenalidomide in myelodysplastic syndrome infants without chromosome 5 deletion. (PMID:23434730)
  • Findings suggest an approach for the treatment of mental retardation associated with cereblon nonsense mutation. (PMID:23983124)
  • CRBN and IRF4 have been shown to be associated with response to lenalidomide in patients, these findings do not translate back to HMCLs, which could be attributable to factors present in the bone marrow microenvironment. (PMID:23992230)
  • CRBN expression may provide a biomarker to predict response to Immunomodulatory drugs in patients with MM and its high expression can serve as a marker of good prognosis. (PMID:24118365)
  • Data indicate that low cereblon (CRBN) expression can predict resistance to immunomodulatory drug (IMiD monotherapy and is a predictive biomarker for survival outcomes. (PMID:24129344)
  • In the three intrinsically IMiD-resistant cell lines that clearly express detectable levels of cereblon, the absence of CRBN and DDB1 mutations suggest that potential cereblon-independent mechanisms of resistance exist (PMID:24166296)
  • Presents a molecular model in which drug binding to cereblon results in the interaction of Ikaros and Aiolos to CRL4(CRBN) , leading to their ubiquitination, subsequent proteasomal degradation and T cell activation. (PMID:24328678)
  • CRBN expression in bone marrow myeloma cells is associated with superior treatment response to lenalidomide in refractory myeloma and thalidomide/dexamethasone in new patients. CRBN is a crucial factor for the anti-MM effect of immunomodulators. (PMID:24687382)
  • Data suggest that cereblon (CRBN) expression in peripheral blood chronic lymphocytic leukemia (CLL) cells is independent of prognostic factors and may be considered a potential biomarker. (PMID:24925210)
  • structures of the DDB1-CRBN complex bound to thalidomide, lenalidomide and pomalidomide (PMID:25043012)
  • The study presents the crystal structure of human CRBN bound to DDB1 and the drug lenalidomide. (PMID:25108355)
  • High levels of full-length CRBN mRNA in lower risk 5q deletion patients are necessary for the efficacy of lenalidomide. (PMID:25284710)
  • Studied the protein cereblon , which has been recently indentified as a primary target of thalidomide and its C-terminal part as responsible for binding thalidomide within a domain carrying several invariant cysteine and tryptophan residues. (PMID:25569776)
  • A copy number gain of CRBN gene might be responsible for developmental delay/intellectual disability. (PMID:25858704)
  • Our data are consistent with the idea that the CUL4A/B-DDB1-CRBN complex catalyses the polyubiquitination and thus controls the degradation of CLC-1 channels. (PMID:26021757)
  • Structural dynamics of the cereblon ligand binding domain. (PMID:26024445)
  • The anti-PEL effects of IMiDs involved cereblon-dependent suppression of IRF4 and rapid degradation of IKZF1, but not IKZF3. Small hairpin RNA-mediated knockdown of MYC enhanced the cytotoxicity of IMiDs (PMID:26119939)
  • dual assay demonstrated superior Cereblon IHC measurement in MM samples compared with the single IHC assay using a published commercial rabbit polyclonal Cereblon antibody and could be used to explore the potential utility of Cereblon as a biomarker in the clinic (PMID:26186254)
  • Although abnormal CRBN function may be associated with intellectual disability disease onset, its cellular mechanism is still unclear. Here, we examine the role of CRBN in aggresome formation and cytoprotection. (PMID:26188093)
  • GS is acetylated at lysines 11 and 14, yielding a degron that is necessary and sufficient for binding and ubiquitylation by CRL4(CRBN) and degradation by the proteasome. (PMID:26990986)
  • These results support the notion that the cereblon binding partner AGO2 plays an important role in regulating MM cell growth and survival and AGO2 could be considered as a novel drug target for overcoming IMiD resistance in MM cells. (PMID:27142104)
  • results suggest that CRBN binds to Ikaros via its N-terminal region and regulates transcriptional activities of Ikaros and its downstream target, enkephalin (PMID:27329811)
  • 45.2 of multiple myeloma patients were CRBN(+). Among patients treated with thalidomide-based regimens, CRBN(+) patients showed a better treatment response than did CRBN-negative patients. There was no significant difference in survival outcomes between thalidomide- and bortezomib-based regimens in CRBN(+) patients. (PMID:27365142)
  • mitochondrially expressed CRBN exhibited protease activity, and was induced by oxidative stress. (PMID:27417535)
  • Compared with newly diagnosed multiple myeloma, an increased prevalence of mutations in the Ras pathway genes KRAS, NRAS, and/or BRAF (72%), as well as TP53 (26%), CRBN (12%), and CRBN pathway genes (10%) was observed. (PMID:27458004)
  • overview of the current understanding of mechanism of action of Immunomodulatory drugs via CRBN and prospects for the development of new drugs that degrade protein of interest. (PMID:27460676)
  • CRBN negatively regulates TLR4 signaling via attenuation of TRAF6 and TAB2 ubiquitination. (PMID:27468689)
  • we identify Rabex-5 as a Immunomodulatory drugs (IMiDs) target molecule that functions to restrain TLR activated auto-immune promoting pathways. We propose that release of Rabex-5 from complex with Cereblon enables the suppression of immune responses, contributing to the antiinflammatory properties of IMiDs. (PMID:27601648)
  • CRBN expression is of prognostic value in MM patients ineligible for ASCT treated with thalidomide as an immunomodulatory drug. With low expression indicating a possible suboptimal treatment outcome, measurement of CRBN expression might serve as additional prognostic tool in the personalized treatment approach. (PMID:27618360)
  • We sequenced CRBN-thalidomide binding region in 38 thalidomide embryopathy individuals and 136 Brazilians without congenital anomalies, and performed in silico analyses. Eight variants were identified, seven intronic and one in 3’UTR. (PMID:27751757)
  • High CRBN expression is associated with multiple myeloma. (PMID:28017969)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_reriocrbnENSDARG00000054250
mus_musculusCrbnENSMUSG00000005362
rattus_norvegicusCrbnENSRNOG00000006534
drosophila_melanogasterohgtFBGN0037780
caenorhabditis_elegansWBGENE00010891

Protein

Protein identifiers

Protein cereblonQ96SW2 (reviewed: Q96SW2)

All UniProt accessions (4): Q96SW2, A0A1W2PPJ5, J3QT51, J3QT87

UniProt curated annotations — full annotation on UniProt →

Function. Substrate recognition component of a DCX (DDB1-CUL4-X-box) E3 protein ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins, such as MEIS2, ILF2 or GLUL. Normal degradation of key regulatory proteins is required for normal limb outgrowth and expression of the fibroblast growth factor FGF8. Maintains presynaptic glutamate release and consequently cognitive functions, such as memory and learning, by negatively regulating large-conductance calcium-activated potassium (BK) channels in excitatory neurons. Likely to function by regulating the assembly and neuronal surface expression of BK channels via its interaction with KCNT1. May also be involved in regulating anxiety-like behaviors via a BK channel-independent mechanism. Plays a negative role in TLR4 signaling by interacting with TRAF6 and ECSIT, leading to inhibition of ECSIT ubiquitination, an important step of the signaling.

Subunit / interactions. Interacts with KCNT1. Component of a DCX (DDB1-CUL4-X-box) protein ligase complex, at least composed of CRBN, CUL4A, DDB1 and RBX1. Interacts directly with DDB1. Interacts (in pomalidomide-bound form) with IKZF1 and IKZF3. Interacts with ILF2. Interacts with TRAF6 and ECSIT.

Subcellular location. Cytoplasm. Nucleus. Membrane.

Tissue specificity. Widely expressed. Highly expressed in brain.

Post-translational modifications. Ubiquitinated, ubiquitination is mediated by its own DCX protein ligase complex.

Disease relevance. Intellectual developmental disorder, autosomal recessive 2 (MRT2) [MIM:607417] A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. MRT2 patients display mild intellectual disability with a standard IQ ranged from 50 to 70. IQ scores are lower in males than females. Developmental milestones are mildly delayed. There are no dysmorphic or autistic features. The disease is caused by variants affecting the gene represented in this entry.

Domain organisation. The CULT domain binds thalidomide and related drugs, such as pomalidomide and lenalidomide. Drug binding leads to a change in substrate specificity of the human DCX (DDB1-CUL4-X-box) E3 protein ligase complex, while no such change is observed in rodents.

Pathway. Protein modification; protein ubiquitination.

Miscellaneous. Thalidomide was widely prescribed to pregnant women in the late 1950s as a sedative and as treatment against morning sickness. Thalidomide was found to be teratogenic, causing multiple birth defects. More recently, thalidomide use has increased for the treatment of multiple myeloma and erythema nodosum leprosum, a painful complication of leprosy. Binding of pomalidomide and other thalidomide-related drugs leads to a change in substrate specificity of the human DCX (DDB1-CUL4-X-box) E3 protein ligase complex, and this is probably the underlying cause of the teratogenic activity of thalidomide, possibly due to abnormal regulation of the BMP and FGF8 signaling pathways. The thalidomide-induced change in substrate specificity leads to decreased degradation of MEIS2 and other target proteins and increased degradation of MYC, IRF4, IKZF1 and IKZF3, and this is probably the reason for the anti-proliferative and immunomodulatory effects of thalidomide and related drugs. Thalidomide is also teratogenic in chicken and zebrafish, but not in mice.

Similarity. Belongs to the CRBN family.

Isoforms (2)

UniProt IDNamesCanonical?
Q96SW2-11yes
Q96SW2-22

RefSeq proteins (2): NP_001166953, NP_057386* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR003111Lon_prtase_NDomain
IPR004910Yippee/Mis18/CereblonDomain
IPR015947PUA-like_sfHomologous_superfamily
IPR034750CULTDomain
IPR046336Lon_prtase_N_sfHomologous_superfamily

Pfam: PF02190, PF03226

UniProt features (66 total): strand 22, helix 16, binding site 7, turn 6, sequence conflict 4, mutagenesis site 3, domain 2, chain 1, modified residue 1, splice variant 1, sequence variant 1, region of interest 1, compositionally biased region 1

Structure

Experimental structures (PDB)

90 structures, top 30 by resolution.

PDBMethodResolution (Å)
4M91X-RAY DIFFRACTION1.1
9CUOX-RAY DIFFRACTION1.6
9OHQX-RAY DIFFRACTION1.6
9DOMX-RAY DIFFRACTION1.69
7BQVX-RAY DIFFRACTION1.8
9O91X-RAY DIFFRACTION1.86
7BQUX-RAY DIFFRACTION1.9
9GAOX-RAY DIFFRACTION1.95
9FJXX-RAY DIFFRACTION2
8RQCX-RAY DIFFRACTION2.15
8RQ8X-RAY DIFFRACTION2.19
9OHRX-RAY DIFFRACTION2.34
9SFMX-RAY DIFFRACTION2.39
8TNQELECTRON MICROSCOPY2.41
9ODRX-RAY DIFFRACTION2.42
5FQDX-RAY DIFFRACTION2.45
8OIZX-RAY DIFFRACTION2.5
8RQAX-RAY DIFFRACTION2.5
8TNRELECTRON MICROSCOPY2.5
9GY3X-RAY DIFFRACTION2.5
9OS2ELECTRON MICROSCOPY2.5
9SAFELECTRON MICROSCOPY2.55
11MRELECTRON MICROSCOPY2.6
9ODSX-RAY DIFFRACTION2.61
9SAIELECTRON MICROSCOPY2.66
9OUKELECTRON MICROSCOPY2.69
9NWSELECTRON MICROSCOPY2.7
9NWTELECTRON MICROSCOPY2.7
8OJHX-RAY DIFFRACTION2.72
9D0XELECTRON MICROSCOPY2.84

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q96SW2-F186.870.72

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (7): 391; 394; 323; 326; 378; 380; 386

Post-translational modifications (1): 25

Mutagenesis-validated functional residues (3):

PositionPhenotype
384abolishes thalidomide-binding without affecting dcx protein ligase complex activity; when associated with a-386.
386abolishes thalidomide-binding without affecting dcx protein ligase complex activity; when associated with a-384. abolish
419–442fails to rescue increased bk channel activity and decreased probability of neurotransmission in a mouse hippocampal neur

Function

Pathways and Gene Ontology

Reactome pathways

1 pathways

IDPathway
R-HSA-9679191Potential therapeutics for SARS

MSigDB gene sets: 222 (showing top): GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_UP, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_CONTAINING_COMPLEX_ASSEMBLY, GOBP_NEGATIVE_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, GOBP_BEHAVIOR, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_REGULATION_OF_WNT_SIGNALING_PATHWAY, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_POSITIVE_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOBP_NEGATIVE_REGULATION_OF_TRANSPORT, MILI_PSEUDOPODIA_HAPTOTAXIS_UP, MODULE_480, GOBP_APPENDAGE_DEVELOPMENT, GOBP_REGULATION_OF_PROTEIN_CONTAINING_COMPLEX_ASSEMBLY, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION

GO Biological Process (8): protein ubiquitination (GO:0016567), positive regulation of Wnt signaling pathway (GO:0030177), negative regulation of protein-containing complex assembly (GO:0031333), positive regulation of protein-containing complex assembly (GO:0031334), negative regulation of monoatomic ion transmembrane transport (GO:0034766), locomotory exploration behavior (GO:0035641), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), limb development (GO:0060173)

GO Molecular Function (3): transmembrane transporter binding (GO:0044325), metal ion binding (GO:0046872), protein binding (GO:0005515)

GO Cellular Component (6): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), membrane (GO:0016020), Cul4A-RING E3 ubiquitin ligase complex (GO:0031464), perinuclear region of cytoplasm (GO:0048471)

Reactome top-level categories

Rollup of top-1 pathways:

CategoryPathways
SARS-CoV Infections1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure4
regulation of protein-containing complex assembly2
protein-containing complex assembly2
cytoplasm2
protein modification by small protein conjugation1
positive regulation of signal transduction1
Wnt signaling pathway1
regulation of Wnt signaling pathway1
negative regulation of cellular component organization1
positive regulation of cellular component biogenesis1
positive regulation of cellular component organization1
monoatomic ion transmembrane transport1
negative regulation of transmembrane transport1
regulation of monoatomic ion transmembrane transport1
negative regulation of monoatomic ion transport1
locomotory behavior1
exploration behavior1
ubiquitin-dependent protein catabolic process1
proteasomal protein catabolic process1
appendage development1
protein binding1
cation binding1
binding1
intracellular membrane-bounded organelle1
intracellular anatomical structure1
Cul4-RING E3 ubiquitin ligase complex1

Protein interactions and networks

STRING

1662 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
CRBNCUL4AQ13619999
CRBNDDB1Q16531999
CRBNRBX1P62877998
CRBNIKZF1Q13422997
CRBNIKZF3Q9UKT9997
CRBNCUL4BQ13620992
CRBNKCNMA1Q12791888
CRBNCSNK1A1P48729885
CRBNGSPT1P15170878
CRBNLONP2Q86WA8855
CRBNPRSS12P56730846
CRBNBTKQ06187836
CRBNLONP1P36776827
CRBNCC2D1AQ6P1N0802
CRBNBRD4O60885795

IntAct

68 interactions, top by confidence:

ABTypeScore
CUL4BCOPS2psi-mi:“MI:0914”(association)0.790
COPS6RHOBTB1psi-mi:“MI:0914”(association)0.730
CRBNDDB1psi-mi:“MI:0915”(physical association)0.720
PAK5CRBNpsi-mi:“MI:0915”(physical association)0.670
CRBNPAK5psi-mi:“MI:0915”(physical association)0.670
CRBNCUL4Apsi-mi:“MI:0914”(association)0.650
CRBNCSNK1A1psi-mi:“MI:0914”(association)0.640
CRBNCSNK1A1psi-mi:“MI:0915”(physical association)0.640
CUL4ACOPS2psi-mi:“MI:0914”(association)0.640
TGIF2LYPGPpsi-mi:“MI:0914”(association)0.640
RBPMSCRBNpsi-mi:“MI:0915”(physical association)0.560
MISPCRBNpsi-mi:“MI:0915”(physical association)0.560
CRBNpsi-mi:“MI:0915”(physical association)0.560
CRBNPMP22psi-mi:“MI:0915”(physical association)0.560
KLF11CRBNpsi-mi:“MI:0915”(physical association)0.560
COL26A1CRBNpsi-mi:“MI:0915”(physical association)0.560

BioGRID (471): CRBN (Two-hybrid), PAK7 (Two-hybrid), CLCN1 (Affinity Capture-Western), CRBN (Two-hybrid), CRBN (Two-hybrid), CRBN (Two-hybrid), CUL4A (Affinity Capture-Western), DDB1 (Affinity Capture-Western), CRBN (Affinity Capture-Western), DDB1 (Affinity Capture-Western), CUL4A (Affinity Capture-Western), CRBN (Affinity Capture-MS), CRBN (Affinity Capture-MS), CRBN (Affinity Capture-MS), CRBN (Affinity Capture-MS)

ESM2 similar proteins: A0JM23, A7E2V1, D2HRF1, E1BVR9, F1ND48, F6Y9J3, O02697, O94952, P0CF65, P0CI65, P42338, P48736, Q32PJ3, Q32PY6, Q3U3W5, Q3UMR0, Q4R3W5, Q4R6Y8, Q56AP7, Q5R5S1, Q5R6Y2, Q5R9R1, Q5REW9, Q5T8I9, Q5U2X1, Q5U2Z5, Q6AZT7, Q6P2P2, Q6P3K3, Q7TNH6, Q7Z494, Q80V94, Q8BGG7, Q8BK06, Q8BTI9, Q8C7D2, Q8CAE2, Q8CD92, Q8NEC7, Q8TF42

Diamond homologs: P0CF65, Q0P564, Q56AP7, Q5R6Y2, Q640S2, Q68EH9, Q8C7D2, Q96SW2

SIGNOR signaling

12 interactions.

AEffectBMechanism
2-(2,6-dioxopiperidin-3-yl)-1H-isoindole-1,3(2H)-dione“up-regulates activity”CRBN“chemical activation”
CRBN“form complex”Cullin4-RBX1-DDB1binding
lenalidomide“up-regulates activity”CRBN“chemical activation”
pomalidomide“down-regulates activity”CRBN“chemical inhibition”
lenalidomide“down-regulates activity”CRBN“chemical inhibition”
CRBN“down-regulates quantity by destabilization”SALL4ubiquitination
thalidomide“down-regulates activity”CRBN“chemical inhibition”
CRBN“down-regulates quantity by destabilization”SALL4binding
CRBN“down-regulates quantity by destabilization”TP63polyubiquitination
FBXO7“down-regulates quantity by destabilization”CRBNbinding
“Cullin 1-RBX1-Skp1”“down-regulates quantity by destabilization”CRBNpolyubiquitination
CRBN“down-regulates quantity by destabilization”IKZF3ubiquitination

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 49 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
DNA Damage Recognition in GG-NER760.6×4e-09
Formation of TC-NER Pre-Incision Complex744.9×2e-08
Neddylation811.5×3e-05

GO biological processes:

GO termPartnersFoldFDR
cellular response to UV534.4×8e-05
DNA damage response67.5×9e-03

Disease & clinical

Cancer significance

Clinical variants and AI predictions

ClinVar

126 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic5
Likely pathogenic6
Uncertain significance74
Likely benign17
Benign9

Top pathogenic / likely-pathogenic (11)

Variant IDHGVSClassification
1032731NM_016302.4(CRBN):c.433C>T (p.Arg145Ter)Pathogenic
1321315NM_016302.4(CRBN):c.129dup (p.Pro44fs)Pathogenic
4071608NM_016302.4(CRBN):c.846_847del (p.Tyr282_Arg283delinsTer)Pathogenic
984705NM_016302.4(CRBN):c.835+1G>APathogenic
987486NM_016302.4(CRBN):c.807dup (p.Asp270fs)Pathogenic
1180660NM_016302.4(CRBN):c.913_914dup (p.Gln306fs)Likely pathogenic
1196420NM_016302.4(CRBN):c.235C>T (p.Gln79Ter)Likely pathogenic
1684148NM_016302.4(CRBN):c.791G>A (p.Trp264Ter)Likely pathogenic
1690413NM_016302.4(CRBN):c.124A>T (p.Lys42Ter)Likely pathogenic
800320NM_016302.4(CRBN):c.1100A>T (p.Asn367Ile)Likely pathogenic
816985NM_016302.4(CRBN):c.641C>G (p.Ser214Ter)Likely pathogenic

SpliceAI

2982 predictions. Top by Δscore:

VariantEffectΔscore
3:3146532:GATT:Gdonor_gain1.0000
3:3151043:TAC:Tacceptor_gain1.0000
3:3151046:CTAAG:Cacceptor_loss1.0000
3:3153418:CCTTA:Cdonor_loss1.0000
3:3153419:CTTA:Cdonor_loss1.0000
3:3153420:TTA:Tdonor_loss1.0000
3:3153484:GTACA:Gacceptor_gain1.0000
3:3153485:TACA:Tacceptor_gain1.0000
3:3153486:ACA:Aacceptor_gain1.0000
3:3153487:CA:Cacceptor_gain1.0000
3:3153487:CAC:Cacceptor_gain1.0000
3:3153488:AC:Aacceptor_loss1.0000
3:3153489:C:CCacceptor_gain1.0000
3:3153489:C:Tacceptor_loss1.0000
3:3153958:A:ACdonor_gain1.0000
3:3153959:C:CCdonor_gain1.0000
3:3167633:CCTT:Cdonor_gain1.0000
3:3167792:TT:Tacceptor_gain1.0000
3:3167794:C:CCacceptor_gain1.0000
3:3167794:CTAAA:Cacceptor_loss1.0000
3:3172770:TCTTA:Tdonor_loss1.0000
3:3172771:CTTA:Cdonor_loss1.0000
3:3172772:TTA:Tdonor_loss1.0000
3:3172773:TA:Tdonor_loss1.0000
3:3172774:A:ACdonor_gain1.0000
3:3172774:A:AGdonor_loss1.0000
3:3172775:C:CCdonor_gain1.0000
3:3172775:CCCAT:Cdonor_gain1.0000
3:3172779:T:Cdonor_gain1.0000
3:3172795:G:Cdonor_gain1.0000

AlphaMissense

2926 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
3:3150988:A:CF402L1.000
3:3150988:A:TF402L1.000
3:3150990:A:GF402L1.000
3:3150994:C:AW400C1.000
3:3150994:C:GW400C1.000
3:3150996:A:GW400R1.000
3:3150996:A:TW400R1.000
3:3150998:C:TG399E1.000
3:3151023:A:GC391R1.000
3:3152466:A:GW380R1.000
3:3152466:A:TW380R1.000
3:3153988:A:GL308P1.000
3:3154069:G:AS281F1.000
3:3150944:A:GL417S0.999
3:3150951:A:GW415R0.999
3:3150951:A:TW415R0.999
3:3150952:A:CF414L0.999
3:3150952:A:TF414L0.999
3:3150953:A:GF414S0.999
3:3150954:A:GF414L0.999
3:3150989:A:GF402S0.999
3:3150995:C:GW400S0.999
3:3150998:C:AG399V0.999
3:3150999:C:GG399R0.999
3:3150999:C:TG399R0.999
3:3151014:A:GC394R0.999
3:3151021:A:CC391W0.999
3:3151022:C:GC391S0.999
3:3151022:C:TC391Y0.999
3:3151023:A:TC391S0.999

dbSNP variants (sampled 300 via entrez): RS1000042317 (3:3161373 T>C), RS1000079919 (3:3150141 T>C,G), RS1000102252 (3:3166882 G>C), RS1000229379 (3:3180946 A>C,T), RS1000721359 (3:3163932 T>C), RS1000869085 (3:3168566 A>G,T), RS1000898777 (3:3168310 A>C,G), RS1000905850 (3:3171923 C>T), RS1000961434 (3:3149261 A>ATACTT), RS1000967373 (3:3150267 TTCGTGGGCTCAA>T), RS1001032166 (3:3177198 C>T), RS1001131559 (3:3173213 A>G), RS1001232881 (3:3171338 A>G), RS1001460575 (3:3177010 A>T), RS1001567010 (3:3176604 T>C)

Disease associations

OMIM: gene MIM:609262 | disease phenotypes: MIM:607417, MIM:254500

GenCC curated gene-disease

DiseaseClassificationInheritance
autosomal recessive non-syndromic intellectual disabilitySupportiveAutosomal recessive
intellectual disability, autosomal recessive 2LimitedAutosomal recessive

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
intellectual disabilityModerateAR

Mondo (4): intellectual disability, autosomal recessive 2 (MONDO:0011828), intellectual disability (MONDO:0001071), plasma cell myeloma (MONDO:0009693), autosomal recessive non-syndromic intellectual disability (MONDO:0019502)

Orphanet (4): Autosomal recessive non-syndromic intellectual disability (Orphanet:88616), Multiple myeloma (Orphanet:29073), AL amyloidosis (Orphanet:85443), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)

HPO phenotypes

10 total (10 of 10 shown, HPO-id order):

HPOTerm
HP:0000007Autosomal recessive inheritance
HP:0001250Seizure
HP:0001256Mild intellectual disability
HP:0001263Global developmental delay
HP:0001344Absent speech
HP:0003593Infantile onset
HP:0007018Attention deficit hyperactivity disorder
HP:0010864Severe intellectual disability
HP:0031936Delayed ability to walk
HP:0100716Self-injurious behavior

GWAS associations

13 associations (top):

StudyTraitp-value
GCST001491_7Immune response to smallpox vaccine (IL-6)8.000000e-07
GCST001760_5White matter integrity6.000000e-06
GCST002337_146Amyotrophic lateral sclerosis (sporadic)4.000000e-06
GCST003820_6Knee osteoarthritis8.000000e-06
GCST004618_59White blood cell count (basophil)1.000000e-26
GCST004631_58Basophil percentage of white cells1.000000e-28
GCST004634_18Basophil percentage of granulocytes3.000000e-25
GCST005042_6Restless legs syndrome2.000000e-13
GCST005976_14White blood cell count (basophil)3.000000e-20
GCST010725_42Malaria5.000000e-07
GCST010725_55Malaria9.000000e-07
GCST90002379_35Basophil count7.000000e-17
GCST90002380_136Basophil percentage of white cells2.000000e-17

EFO canonical traits (5, from GWAS)

EFO IDTrait name
EFO:0004645response to vaccine
EFO:0004641white matter integrity
EFO:0005090basophil count
EFO:0007992basophil percentage of leukocytes
EFO:0007995basophil percentage of granulocytes

MeSH disease descriptors (3)

DescriptorNameTree numbers
D008607Intellectual DisabilityC10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539
D009101Multiple MyelomaC04.557.595.500; C14.907.454.460; C15.378.147.780.650; C15.378.463.515.460; C20.683.515.845; C20.683.780.650
C564404Mental Retardation, Autosomal Recessive 2 (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (303): CHEMBL3763008 (SINGLE PROTEIN), CHEMBL3833061 (PROTEIN COMPLEX), CHEMBL4296102 (PROTEIN COMPLEX), CHEMBL4296103 (PROTEIN COMPLEX), CHEMBL4296125 (PROTEIN-PROTEIN INTERACTION), CHEMBL4296126 (PROTEIN-PROTEIN INTERACTION), CHEMBL4296127 (PROTEIN-PROTEIN INTERACTION), CHEMBL4296128 (PROTEIN-PROTEIN INTERACTION), CHEMBL4296129 (PROTEIN-PROTEIN INTERACTION), CHEMBL4296130 (PROTEIN-PROTEIN INTERACTION)

Molecules with ChEMBL bioactivity

18 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 392,290 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL3137312DASABUVIR41,088
CHEMBL43452POMALIDOMIDE413,354
CHEMBL468THALIDOMIDE497,393
CHEMBL848LENALIDOMIDE45,256
CHEMBL1171837PONATINIB48,955
CHEMBL4208229ASCIMINIB4882
CHEMBL3545311BRIGATINIB45,634
CHEMBL601719CRIZOTINIB414,403
CHEMBL3989927IBERDOMIDE31,300
CHEMBL566URACIL3235,501
CHEMBL5095210VEPDEGESTRANT3336
CHEMBL4648616MEZIGDOMIDE3477
CHEMBL3989934AVADOMIDE21,506
CHEMBL4297376E-78202476
CHEMBL77517INDISULAM2799
CHEMBL1976040ADAVOSERTIB21,738
CHEMBL1230609FORETINIB23,096
CHEMBL4297459CC-11006196

Clinical evidence (CIViC)

Drug × variant × indication: 1 predictive associations from 1 curated evidence items.

VariantTherapyIndicationEffectLevelCIViC
CRBN MutationLenalidomide + PomalidomideMultiple MyelomaResistanceCIViC CEID1766

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB variants

1 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs1705814CRBN0.000

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — E3 ubiquitin ligase components

Most potent curated ligand interactions (21 total), top 21:

LigandActionAffinityParameter
AK-2292Binding9.77pKi
MG-277Binding8.51pIC50
thalidomideBinding8.07pKd
MD-222Binding8.0pIC50
TL12-186Binding7.92pIC50
SJ995973Binding7.77pIC50
compound 7f [PMID: 31251063]Binding7.7pKi
mezigdomideBinding7.52pIC50
dBRD9Binding7.5pIC50
avadomideBinding7.27pIC50
iberdomideBinding7.22pIC50
dTAG-13Binding7.19pIC50
PTD10Binding6.97pIC50
NVP-DKY709Binding6.89pIC50
SK5527Binding5.95pKi
pomalidomideBinding5.92pIC50
TX-16Binding5.85pKi
lenalidomideBinding5.82pIC50
CBPD-268Binding5.74pIC50
SB-405483Allosteric modulator5.6pKd
MS40Binding4.83pKd

Binding affinities (BindingDB)

998 measured of 1565 human assays (1876 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
3-[4-[[(1R)-1-(4-methoxyphenyl)ethyl]amino]-1,3-dihydroisoindol-2-yl]piperidine-2,6-dioneKD16 nMUS-20250129041: MOLECULAR GLUE AND USES THEREOF
3-(1-oxo-5-(7-(pyrrolidin-1- ylmethyl)imidazo[1,5-a]pyridin-5- yl)isoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(6-(((2,6-dichloro- phenethyl)amino)methyl)imi- dazo[1,2-a]pyridin-8-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(7-(azetidin-1- ylmethyl)imidazo[1,5-a]pyridin-5- yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(1-oxo-5-(7-(piperidin-1- ylmethyl)imidazo[1,5-a]pyridin-5- yl)isoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(6-(((2-chloro- phenethyl)amino)methyl)imi- dazo[1,2-a]pyridin-8-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(1-oxo-5-(6-(((1- phenylethyl)amino)methyl)imidazo [1,2-a]pyridin-8-yl)isoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(7-((3-methylpyrrolidin-1- yl)methyl)imidazo[1,5-a]pyridin-5- yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(1-oxo-5-(6-(((2-phenylpropan- 2-yl)amino)methyl)imidazo[1,2- a]pyridin-8-yl)isoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(1-oxo-5-(6-((2- phenylpyrrolidin-1- yl)methyl)imidazo[1,2-a]pyridin-8- yl)isoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(6-(((2- chlorophenethyl)amino)methyl)-1- methyl-1H-benzo[d]imidazol-4- yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(7-((diethylamino)methyl) imidazo[1,5-a]pyridin-5-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(7- ((benzylamino)methyl)imidazo[1,5- a]pyridin-5-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(1-oxo-5-(7-((((S*)-1- phenylethyl)amino)methyl)imidazo [1,5-a]pyridin-5-yl)isoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(1-methyl-4-(pyrrolidin-1- ylmethyl)-1H-pyrrolo[2,3- b]pyridin-6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(1-methyl-4-(piperidin-1- ylmethyl)-1H-pyrrolo[2,3- b]pyridin-6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(1-oxo-5-(4-(pyrrolidin-1- ylmethyl)-1H-pyrrolo[2,3- b]pyridin-6-yl)isoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(7-(((2- chlorophenethyl)amino)methyl)imi- dazo[1,5-a]pyridin-5-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(1-methyl-4- (thiomorpholinomethyl)-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(1-methyl-4-((tetrahydro-1H- furo[3,4-c]pyrrol-5(3H)- yl)methyl)-1H-pyrrolo[2,3- b]pyridin-6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4-((6-azaspiro[2.5]octan-6- yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(7-((((1-methyl-1H-indol-7- yl)methyl)amino)methyl)imi- dazo[1,5-a]pyridin-5-yl)-1- oxoisoindolin- 2-yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4-((3,4-dihydroisoquinolin- 2(1H)-yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(1-oxo-5-(7-((2- phenylpyrrolidin-1- yl)methyl)imidazo[1,5-a]pyridin-5- yl)isoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4-((3- azabicyclo[3.1.0]hexan-3- yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4-((7-azaspiro[3.5]nonan-7- yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(4-methoxy-1-oxo-5-(7- (pyrrolidin-1- ylmethyl)imidazo[1,5-a]pyridin-5- yl)isoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(1-methyl-4-((2- phenylazetidin-1-yl)methyl)-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(7-methoxy-1-oxo-5-(7- (pyrrolidin-1- ylmethyl)imidazo[1,5-a]pyridin-5- yl)isoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4- ((hexahydrocyclopenta[c]pyrrol- 2(1H)-yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(1-oxo-5-(6-(piperidin-1- ylmethyl)imidazo[1,2-a]pyridin-8- yl)isoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4-((2-oxa-7- azaspiro[3.5]nonan-7-yl)methyl)-1- methyl-1H-pyrrolo[2,3-b]pyridin- 6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(6-((4,4-difluoropiperidin-1- yl)methyl)imidazo[1,2-a]pyridin-8- yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(4-fluoro-5-(1-methyl-4- (pyrrolidin-1-ylmethyl)-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(6-((4,4-dimethylpiperidin-1- yl)methyl)imidazo[1,2-a]pyridin-8- yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(6-(((2-chloro- benzyl)amino)methyl)imidazo [1,2-a]pyridin-8-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(1-oxo-5-(4-(pyrrolidin-1- ylmethyl)-5,6,7,8- tetrahydroquinolin-2-yl)isoindolin- 2-yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(6-(((2,4-dichloro- phenethyl)amino)methyl)imi- dazo[1,2-a]pyridin-8-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(1-oxo-5-(4-(pyrrolidin-1- ylmethyl)-6,7-dihydro-5H- cyclopenta[b]pyridin-2- yl)isoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(1-oxo-5-(4-(pyrrolidin-1- ylmethyl)-1-(tetrahydro-2H-pyran- 4-yl)-1H-pyrrolo[2,3-b]pyridin-6- yl)isoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4-((3-methoxyazetidin-1- yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(1-methyl-4-(1-(pyrrolidin-1- yl)ethyl)-1H-pyrrolo[2,3-b]pyridin- 6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(1-methyl-4-((4- (trifluoromethyl)piperidin-1- yl)methyl)-1H-pyrrolo[2,3- b]pyridin-6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4-((3-methoxypyrrolidin-1- yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(1-(oxetan-3-yl)-4- ((tetrahydro-1H-furo[3,4-c]pyrrol- 5(3H)-yl)methyl)-1H-pyrrolo[2,3- b]pyridin-6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4-((4-fluoropiperidin-1- yl)methyl)-1-(oxetan-3-yl)-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4-((hexahydropyrrolo[1,2- a]pyrazin-2(1H)-yl)methyl)-1- methyl-1H-pyrrolo[2,3-b]pyridin- 6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4-((3- (hydroxymethyl)pyrrolidin-1- yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4-((4-methoxypiperidin-1- yl)methyl)-1-(oxetan-3-yl)-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS
3-(5-(4-((4- (dimethylamino)piperidin-1- yl)methyl)-1-(oxetan-3-yl)-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dioneIC5020 nMUS-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS

ChEMBL bioactivities

1297 potent at pChembl≥5 of 1585 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
10.73EC500.0187nMCHEMBL5076100
10.70IC500.02nMCHEMBL5090416
10.66EC500.022nMCHEMBL5414378
10.62EC500.0238nMCHEMBL5207946
10.56EC500.0276nMCHEMBL5200341
10.15EC500.0714nMCHEMBL5193611
10.00EC500.1nMCHEMBL4645677
10.00EC500.1nMCHEMBL4640365
10.00EC500.1nMCHEMBL4638224
10.00EC500.1nMCHEMBL4636670
10.00EC500.1nMCHEMBL4647905
10.00EC500.1nMCHEMBL4647587
10.00EC500.1nMCHEMBL4637801
10.00EC500.1nMCHEMBL4645982
10.00EC500.1nMCHEMBL4636184
10.00EC500.1nMCHEMBL4644660
10.00EC500.1nMCHEMBL4637622
10.00EC500.1nMCHEMBL4879244
10.00EC500.1nMCHEMBL5094191
9.96Kd0.11nMCHEMBL4748640
9.89Kd0.13nMCHEMBL4742867
9.85Kd0.14nMCHEMBL5561819
9.70EC500.2nMCHEMBL4641034
9.70EC500.2nMCHEMBL4642904
9.70EC500.2nMCHEMBL4741262
9.70EC500.2nMCHEMBL4747369
9.66Kd0.22nMCHEMBL5563992
9.64Kd0.23nMCHEMBL4747034
9.61IC500.244nMCHEMBL5178566
9.59Kd0.26nMCHEMBL4747034
9.55Kd0.28nMCHEMBL4748640
9.52EC500.3nMCHEMBL4645692
9.52EC500.3nMCHEMBL4642197
9.52EC500.3nMCHEMBL4646021
9.52EC500.3nMCHEMBL4648954
9.52EC500.3nMCHEMBL4877348
9.52IC500.3nMCHEMBL6133093
9.51IC500.31nMCHEMBL4744617
9.49Kd0.32nMCHEMBL4642168
9.47Kd0.34nMCHEMBL5561261
9.43Kd0.37nMCHEMBL5567457
9.42Kd0.38nMCHEMBL4742867
9.42Kd0.38nMCHEMBL5567766
9.40EC500.4nMCHEMBL4642361
9.40EC500.4nMCHEMBL4639846
9.40IC500.4nMCHEMBL4760508
9.40IC500.4nMCHEMBL4745409
9.40IC500.4nMCHEMBL4800591
9.40IC500.4nMCHEMBL4745755
9.40IC500.4nMCHEMBL4754618

PubChem BioAssay actives

389 with measured affinity, of 6100 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
N-[4-[4-[4-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]piperazine-1-carbonyl]piperidin-1-yl]phenyl]-2-phenoxypyrimidine-5-carboxamide1858479: PROTAC activity at CRBN/H-PGDS in human KU812 cells assessed as reduction in H-PGDS levels incubated for 24 hrs by Western blotting analysisec50<0.0001uM
4-[[4-[1-[3-(cyanomethyl)-1-ethylsulfonylazetidin-3-yl]pyrazol-4-yl]-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]-N-[3-[4-[4-(2,6-dioxopiperidin-3-yl)phenyl]piperazin-1-yl]propyl]benzamide1827294: Binding affinity to CRBN (unknown origin) measured by Fluorescent Polarization assayic50<0.0001uM
N-[4-[4-[4-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-5-yl]piperazine-1-carbonyl]piperidin-1-yl]phenyl]-2-phenoxypyrimidine-5-carboxamide1858479: PROTAC activity at CRBN/H-PGDS in human KU812 cells assessed as reduction in H-PGDS levels incubated for 24 hrs by Western blotting analysisec50<0.0001uM
N-[4-[4-[4-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-5-yl]piperazine-1-carbonyl]piperidin-1-yl]phenyl]-4-(1-methylpyrrole-2-carbonyl)piperazine-1-carboxamide1858479: PROTAC activity at CRBN/H-PGDS in human KU812 cells assessed as reduction in H-PGDS levels incubated for 24 hrs by Western blotting analysisec50<0.0001uM
2-[2-[2-[2-[2-[2-[6-[4-[3-[3-cyano-4-(2,4-dichloro-5-methoxyanilino)-6-methoxyquinolin-7-yl]oxypropyl]piperazin-1-yl]hexoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]-N-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]acetamide1678549: Protac binding affinity at CRBN/BCR-ABL (unknown origin) assessed as binding to phosphorylated c-ABL kinase domain by Kinomescan assaykd0.0001uM
2-[2-[6-[4-[3-[3-cyano-4-(2,4-dichloro-5-methoxyanilino)-6-methoxyquinolin-7-yl]oxypropyl]piperazin-1-yl]hexoxy]ethoxy]-N-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]acetamide1678549: Protac binding affinity at CRBN/BCR-ABL (unknown origin) assessed as binding to phosphorylated c-ABL kinase domain by Kinomescan assaykd0.0001uM
4-[4-[[4-[[2-(2,6-dioxopiperidin-3-yl)-1-oxo-3H-isoindol-4-yl]oxymethyl]phenyl]methyl]piperazin-1-yl]-3-fluorobenzonitrile1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0001uM
N-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-5-yl]-2-(trifluoromethoxy)benzenesulfonamide1814549: PROTAC activity at human CRBN/HiBiT-fused GSPT1 transfected in HEK293T cells assessed as induction of GSPT1 degradation measured after 4 hrs by Nano-Glo HiBiT lytic assayec500.0001uM
3-[7-[[4-[[4-(3-fluorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0001uM
3-[7-[[4-[4-(2,4-dichlorophenyl)piperazine-1-carbonyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0001uM
3-[7-[[4-[[4-(4-chlorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0001uM
3-[7-[[4-[4-(2,4-difluorophenyl)piperazine-1-carbonyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0001uM
3-[7-[[4-[4-(4-chlorophenyl)piperazine-1-carbonyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0001uM
(3S)-3-[7-[[4-[[4-(2,4-difluorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0001uM
N-[4-[4-[4-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]piperazine-1-carbonyl]piperidin-1-yl]phenyl]-4-(1-methylpyrrole-2-carbonyl)piperazine-1-carboxamide1858479: PROTAC activity at CRBN/H-PGDS in human KU812 cells assessed as reduction in H-PGDS levels incubated for 24 hrs by Western blotting analysisec500.0001uM
N-(2-chloro-6-methylphenyl)-2-[[6-[4-[6-[2-[2-[2-[2-[2-[2-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]-2-oxoethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]hexyl]piperazin-1-yl]-2-methylpyrimidin-4-yl]amino]-1,3-thiazole-5-carboxamide1678549: Protac binding affinity at CRBN/BCR-ABL (unknown origin) assessed as binding to phosphorylated c-ABL kinase domain by Kinomescan assaykd0.0002uM
N-[4-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]butyl]-4-[[4-(1-propylpyrazol-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]benzamide1710172: PROTAC activity at CRBN/JAK2 in human MHHCALL4 cells assessed as protein degradation by immunoblot analysisec500.0002uM
3-[7-[[4-[[4-(2-fluorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0002uM
3-[7-[[4-[[4-(2,4-dichlorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0002uM
(4S)-1-[4-[4-[3-[2-[2-[2-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]ethoxy]ethoxy]ethoxy]propanoyl]piperazin-1-yl]phenyl]-7,8-dimethoxy-N,4-dimethyl-4,5-dihydro-2,3-benzodiazepine-3-carboxamide1852448: Protac activity at His-tagged CRBN/FLAG-tagged DDB1 (unknown origin) in presence of Cy5-labeled thalidomide incubated for 60 min by TR-FRET assayic500.0002uM
N-(2-chloro-6-methylphenyl)-2-[[6-[4-[6-[2-[2-[6-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]-6-oxohexoxy]ethoxy]ethoxy]hexyl]piperazin-1-yl]-2-methylpyrimidin-4-yl]amino]-1,3-thiazole-5-carboxamide1678549: Protac binding affinity at CRBN/BCR-ABL (unknown origin) assessed as binding to phosphorylated c-ABL kinase domain by Kinomescan assaykd0.0003uM
4-[[4-[1-[3-(cyanomethyl)-1-ethylsulfonylazetidin-3-yl]pyrazol-4-yl]-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]-N-[2-[4-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-5-yl]piperazin-1-yl]ethyl]benzamide1827294: Binding affinity to CRBN (unknown origin) measured by Fluorescent Polarization assayic500.0003uM
3-[7-[[4-[[4-(2,6-difluorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0003uM
3-[7-[[4-[4-(4-fluorophenyl)piperazine-1-carbonyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0003uM
N-[2-[4-[[3-[3-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]cyclobutyl]oxypropyl-methylamino]methyl]cyclohexyl]-6-(2-hydroxypropan-2-yl)indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide2085323: Binding affinity to CRBN/IRAK4 in human OCI-Ly10 cells assessed as dissociation constant by DiscoverX Kd Elect assaykd0.0003uM
(1R,9S,12S,15R,16E,18R,19S,21R,23S,24E,26E,28E,30S,32S,35R)-12-[(2S)-1-[(1S,3R,4R)-4-[2-[[1-[2-[2-[2-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]ethoxy]ethoxy]ethyl]triazol-4-yl]methoxy]ethoxy]-3-methoxycyclohexyl]propan-2-yl]-1,18-dihydroxy-19,30-dimethoxy-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.04,9]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone1849962: PROTAC activity at CRBN/FKBP12 in human Jurkat cells assessed as induction of FKBP12 degradation incubated for 12 hrs by Western blot analysisec500.0003uM
N-[2-[4-(hydroxymethyl)cyclohexyl]-6-(2-hydroxypropan-2-yl)indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide2085323: Binding affinity to CRBN/IRAK4 in human OCI-Ly10 cells assessed as dissociation constant by DiscoverX Kd Elect assaykd0.0004uM
3-[6-[9-[2-[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]ethyl]-3,9-diazaspiro[5.5]undecan-3-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assayic500.0004uM
3-[6-[2-[[7-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]-7-azaspiro[3.5]nonan-2-yl]methyl]-2,7-diazaspiro[3.5]nonan-7-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assayic500.0004uM
3-[6-[10-[[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]methyl]-7-oxa-3,10-diazaspiro[5.6]dodecan-3-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assayic500.0004uM
3-[6-[4-[2-[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]ethyl]piperazin-1-yl]-4-methoxy-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assayic500.0004uM
3-[6-[4-[[9-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]oxy-3-azaspiro[5.5]undecan-3-yl]methyl]piperidin-1-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assayic500.0004uM
5-[4-[[4-[[2-(2,6-dioxopiperidin-3-yl)-1-oxo-3H-isoindol-4-yl]oxymethyl]phenyl]methyl]piperazin-1-yl]pyridine-2-carboxamide1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0004uM
4-[[4-[1-[3-(cyanomethyl)-1-ethylsulfonylazetidin-3-yl]pyrazol-4-yl]-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]-N-[2-[4-[4-(2,6-dioxopiperidin-3-yl)phenyl]piperazin-1-yl]ethyl]benzamide1827294: Binding affinity to CRBN (unknown origin) measured by Fluorescent Polarization assayic500.0004uM
N-[2-[4-[[3-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]propyl-methylamino]methyl]cyclohexyl]-6-(2-hydroxypropan-2-yl)indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide2085323: Binding affinity to CRBN/IRAK4 in human OCI-Ly10 cells assessed as dissociation constant by DiscoverX Kd Elect assaykd0.0004uM
3-[6-[10-[2-[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]ethyl]-7-oxa-3,10-diazaspiro[5.6]dodecan-3-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assayic500.0005uM
3-[6-[4-[2-[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]ethyl]piperazin-1-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assayic500.0005uM
3-[6-[4-[2-[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]oxyethyl]piperazin-1-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assayic500.0005uM
N-[3-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]propyl]-4-[[4-(1-propylpyrazol-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]benzamide1710172: PROTAC activity at CRBN/JAK2 in human MHHCALL4 cells assessed as protein degradation by immunoblot analysisec500.0005uM
4-[[4-[1-[3-(cyanomethyl)-1-ethylsulfonylazetidin-3-yl]pyrazol-4-yl]-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]-N-[4-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]butyl]benzamide1710172: PROTAC activity at CRBN/JAK2 in human MHHCALL4 cells assessed as protein degradation by immunoblot analysisec500.0005uM
(3R)-3-[7-[[4-[[4-(2,4-difluorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0005uM
3-[7-[[4-[[4-(4-methoxyphenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0005uM
N-[5-[[2-(2,6-dioxopiperidin-3-yl)-1-oxo-3H-isoindol-4-yl]amino]pentyl]-4-[[4-(1-propylpyrazol-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]benzamide1710172: PROTAC activity at CRBN/JAK2 in human MHHCALL4 cells assessed as protein degradation by immunoblot analysisec500.0005uM
6-[2-[2-[6-[4-[3-[3-cyano-4-(2,4-dichloro-5-methoxyanilino)-6-methoxyquinolin-7-yl]oxypropyl]piperazin-1-yl]hexoxy]ethoxy]ethoxy]-N-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]hexanamide1678549: Protac binding affinity at CRBN/BCR-ABL (unknown origin) assessed as binding to phosphorylated c-ABL kinase domain by Kinomescan assaykd0.0006uM
3-[6-[4-[[4-[[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]methyl]piperazin-1-yl]methyl]piperidin-1-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assayic500.0006uM
3-[6-[4-[5-[3,5-difluoro-4-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]phenoxy]pentyl]piperazin-1-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assayic500.0006uM
3-[7-[[4-[[4-(2,4-dichlorophenyl)-2-oxopiperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0006uM
4-[4-[[[2-[(9S)-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.02,6]trideca-2(6),4,7,10,12-pentaen-9-yl]acetyl]amino]methyl]piperidin-1-yl]-N-(2,6-dioxopiperidin-3-yl)-2-methoxybenzamide2021014: Protac activity at BRD4 in human MOLT-4 cells assessed as BRD4 protein degradation incubated for 24 hrs by immunoblotting analysisec500.0006uM
3-[6-[4-[[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]methyl]piperazin-1-yl]-4-methoxy-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assayic500.0007uM
3-[7-[[4-[[4-(5-fluoro-2-pyridinyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assayec500.0007uM

CTD chemical–gene interactions

42 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
pomalidomideincreases response to substance, affects binding, affects cotreatment, increases expression, decreases reaction (+2 more)4
Lenalidomideincreases response to substance, affects binding, decreases reaction, increases degradation, increases ubiquitination4
Thalidomideaffects response to substance, affects binding, decreases reaction, increases degradation, increases ubiquitination3
cobaltous chlorideincreases expression2
Air Pollutantsdecreases expression, affects expression, increases abundance2
Valproic Aciddecreases expression, increases expression2
GSK-J4increases expression1
afuresertibaffects cotreatment, increases expression1
ginger extractaffects cotreatment, affects expression, increases abundance1
dicrotophosdecreases expression1
methylmercuric chloridedecreases expression1
triphenyl phosphateaffects expression1
bisphenol Aaffects cotreatment, affects expression, increases abundance1
mono-(2-ethylhexyl)phthalatedecreases expression1
sodium arseniteincreases abundance, increases expression1
tobacco tardecreases expression1
4-aminophenylarsenoxideaffects binding, decreases reaction1
cylindrospermopsinincreases expression1
tri-isobutylphosphateaffects expression1
K 7174increases expression1
abrineincreases expression1
2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidineincreases expression, increases response to substance1
jinfukangdecreases expression1
3-(2-hydroxy-4-(2-methylnonan-2-yl)phenyl)cyclohexan-1-oldecreases expression1
Sunitinibincreases expression1
Arsenic Trioxideaffects binding, decreases reaction1
Arsenicincreases abundance, increases expression1
Benzo(a)pyreneincreases methylation1
Dexamethasoneaffects cotreatment, increases expression1
Formaldehydeincreases expression1

ChEMBL screening assays

5948 unique, capped per target: 5779 binding, 154 functional, 15 admet

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL3768094BindingBinding affinity to human CRBN (delta 1 to 315) by FRET assayA FRET-Based Assay for the Identification and Characterization of Cereblon Ligands. — J Med Chem
CHEMBL5346088FunctionalIn vivo protac activity at CRBN/IKZF1 in CB17-SCID mouse xenografted with human TMD8 cells assessed as degradation of IKZF1 protein in tumor at 10 to 90 mg/kg,po administration for 25 days by flow cytomteryDiscovery and Preclinical Pharmacology of NX-2127, an Orally Bioavailable Degrader of Bruton’s Tyrosine Kinase with Immunomodulatory Activity for the Treatment of Patients with B Cell Malignancies. — J Med Chem
CHEMBL4610576ADMETProtac activity at cereblon/cullin4A/BRD3 in human MV4-11 cells assessed as induction of BRD3 degradation at 50 nM measured after 18 hrs by Western blot analysisDiscovery of novel small molecule induced selective degradation of the bromodomain and extra-terminal (BET) bromodomain protein BRD4 and BRD2 with cellular potencies. — Bioorg Med Chem

Cellosaurus cell lines

12 cell lines: 11 cancer cell line, 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B8E0Abcam HCT 116 CRBN KOCancer cell lineMale
CVCL_B9G8Abcam A-549 CRBN KOCancer cell lineMale
CVCL_D2EKAbcam MCF-7 CRBN KOCancer cell lineFemale
CVCL_D7G8Ubigene HEK293T CRBN KOTransformed cell lineFemale
CVCL_D7MTUbigene A-549 CRBN KOCancer cell lineMale
CVCL_E0ATUbigene HeLa CRBN KOCancer cell lineFemale
CVCL_E0TWUbigene Hep G2 CRBN KOCancer cell lineMale
CVCL_E8T6MCF7 CRBN KO clone 2A3Cancer cell lineFemale
CVCL_F1UWHyCyte U-937 KO-hCRBNCancer cell lineMale
CVCL_SJ69HAP1 CRBN (-) 1Cancer cell lineMale

Clinical trials (associated diseases)

300 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT05657860PHASE4COMPLETEDGuanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome
NCT05744479PHASE4RECRUITINGMetformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability
NCT06107829PHASE4WITHDRAWNValbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities
NCT06997198PHASE4NOT_YET_RECRUITINGDeutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities
NCT00029224PHASE4COMPLETEDTreatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions
NCT00104104PHASE4COMPLETEDA Multiple Myeloma Trial in Patients With Bone Metastases
NCT00211211PHASE4COMPLETEDFREE Study - Fracture Reduction Evaluation
NCT00242528PHASE4WITHDRAWNOpen-label Study, to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Bone Lesions Secondary to Multiple Myeloma.
NCT00257114PHASE4COMPLETEDEvaluation of VELCADE Given as Retreatment to Multiple Myeloma Patients for Efficacy, Safety and Tolerability
NCT00352703PHASE4COMPLETEDPROMPT - Palifermin in Reduction of Oral Mucositis in PBSC Transplantation
NCT00361140PHASE4COMPLETEDBusulfan Safety/Efficacy as Conditioning Prior to Hematopoietic Cell Transplantation (HCT)
NCT00622505PHASE4COMPLETEDZoledronic Acid Treatment (Every 4 or 12 Weeks) to Prevent Skeletal Complications in Advanced Multiple Myeloma Participants
NCT00652041PHASE4COMPLETEDBortezomib/Adriamycine/Melfalan/Prednisone (VAMP)/Thalidomide/Cyclophosphamide/Dexamethasone (TaCyDex) or Bortezomib/Melfalan/Prednisone (V-MP)/TaCyDex) in Refractary or Relapsed Multiple Myeloma
NCT00733538PHASE4COMPLETEDStage I Multiple Myeloma Treatment
NCT01087008PHASE4COMPLETEDZoledronic Acid in Patients With Multiple Myeloma and Asymptomatic Biochemical Relapse
NCT01249690PHASE4UNKNOWNEfficacy Study of PAD and TAD in Newly Diagnosed Multiple Myeloma
NCT01410929PHASE4WITHDRAWNEvaluation of Vertebral Compression Fracture Fixation With RF Kyphoplasty in Patients With Multiple Myeloma
NCT01731886PHASE4COMPLETEDLenalidomide and Dexamethasone With/Without Stem Cell Transplant in Patients With Multiple Myeloma
NCT01868828PHASE4UNKNOWNA Study of PAD Versus Velcade, Cyclophosphamide and Dexamethasone (VCD) Treatment in Subjects With Multiple Myeloma
NCT02268890PHASE4COMPLETEDA Pharmacokinetic Study of Bortezomib in Taiwanese Participants With Multiple Myeloma
NCT02286830PHASE4COMPLETEDProlonged Protection From Bone Disease in Multiple Myeloma
NCT02559154PHASE4UNKNOWNModified Bortezomib-based Combination Therapy for Multiple Myeloma
NCT02577783PHASE4UNKNOWNPDD vs PAD to Treat Initially Diagnosed MM
NCT02773550PHASE4TERMINATEDTreatment With a Scheme With Low Doses of Bortezomib / Melphalan / Prednisone (MPV) in Patients With Multiple Myeloma
NCT02958969PHASE4COMPLETEDApixaban for Primary Prevention of Venous Thromboembolism in Patients With Multiple Myeloma
NCT03173092PHASE4TERMINATEDA Study of Ixazomib (NINLARO®) in Combination With Lenalidomide and Dexamethasone (IRD) for the Treatment of Participants With Multiple Myeloma (MM)
NCT03619252PHASE4COMPLETEDPneumococcal Vaccination of Multiple Myeloma Patients on Novel Agents
NCT03768960PHASE4COMPLETEDA Study of DARZALEX (Daratumumab) In Indian Participants With Relapsed and Refractory Multiple Myeloma, Whose Prior Therapy Included a Proteasome Inhibitor and an Immunomodulatory Agent
NCT03829371PHASE4ACTIVE_NOT_RECRUITINGSTUDY COMPARING TWO STANDARD TREATMENTS IN AUTOLOGOUS STEM CELL TRANSPLANTATION INELIGIBLE POPULATION AFFECTED BY MULTIPLE MYELOMA
NCT03908138PHASE4UNKNOWNRDD Versus VDD in Newly Diagnosed Patients With Multiple Myeloma
NCT04217967PHASE4COMPLETEDIxazomib, Lenalidomide, and Combination for Maintenance in NDMM Patients
NCT04952766PHASE4COMPLETEDStudy Evaluating SARS-CoV-2 (COVID-19) Humoral Response After BNT162b2 Vaccine in Immunocompromised Adults Compared to Healthy Adults
NCT04989140PHASE4UNKNOWNStudy of Pomalidomide, Oral Dexamethasone and Ixazomib in Patients With Relapsed MM Who Have Received Lenalidomide
NCT05183139PHASE4WITHDRAWNA Multicenter In-class Transition Study of Ixazomib Combined With Pomalidomide and Dexamethasone or With Lenalidomide and Dexamethasone in Adults With Relapsed/Refractory Multiple Myeloma
NCT05201781PHASE4RECRUITINGA Long-term Study for Participants Previously Treated With Ciltacabtagene Autoleucel
NCT05429515PHASE4NOT_YET_RECRUITINGEffect of HFR-SUPRA in the Treatment of Multiple Myeloma-related Acute Kidney Injury
NCT05511428PHASE4COMPLETEDHome Based Daratumumab Administration for Patients With Multiple Myeloma
NCT05545202PHASE4UNKNOWNA Randomized, Comparative, Double-blind Trial of Pentaisomaltose and Dimethyl Sulphoxide for Cryoprotection of Hematopoietic Stem Cells in Subjects With Multiple Myeloma or Malignant Lymphoma With a Need for Autologous Transplantation
NCT05555329PHASE4COMPLETEDAlternative Dosing Scheme of Pomalidomide 4 mg Every Other Day Versus Pomalidomide 2 mg and 4 mg Every Day; the POMAlternative Study
NCT05722405PHASE4RECRUITINGIxazomib Plus Low-dose Lenalidomide Versus Ixazomib Alone for Maintenance Treatment of High Risk Multiple Myeloma