CRBN
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Also known as MRT2
Summary
CRBN (cereblon, HGNC:30185) is a protein-coding gene on chromosome 3p26.2, encoding Protein cereblon (Q96SW2). Substrate recognition component of a DCX (DDB1-CUL4-X-box) E3 protein ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins, such as MEIS2, ILF2 or GLUL. In precision oncology, CRBN Mutation is associated with resistance to Lenalidomide + Pomalidomide in Multiple Myeloma (CIViC Level C).
This gene encodes a protein related to the Lon protease protein family. In rodents and other mammals this gene product is found in the cytoplasm localized with a calcium channel membrane protein, and is thought to play a role in brain development. Mutations in this gene are associated with autosomal recessive nonsyndromic cognitive disability. Multiple transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 51185 — RefSeq curated summary.
At a glance
- Gene–disease (curated): intellectual disability (Moderate, ClinGen) — +2 more curated relationships
- GWAS associations: 13
- Clinical variants (ClinVar): 126 total — 5 pathogenic, 6 likely-pathogenic
- Phenotypes (HPO): 10
- Druggable target: yes — 18 molecules with ChEMBL bioactivity
- Precision-oncology evidence (CIViC): 1 curated variant–drug association
- MANE Select transcript:
NM_016302
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30185 |
| Approved symbol | CRBN |
| Name | cereblon |
| Location | 3p26.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MRT2 |
| Ensembl gene | ENSG00000113851 |
| Ensembl biotype | protein_coding |
| OMIM | 609262 |
| Entrez | 51185 |
Gene structure
Transcript identifiers
Ensembl transcripts: 25 — 16 protein_coding, 9 retained_intron
ENST00000231948, ENST00000424814, ENST00000432408, ENST00000450014, ENST00000459840, ENST00000478353, ENST00000480249, ENST00000482844, ENST00000488263, ENST00000491834, ENST00000492178, ENST00000498442, ENST00000498700, ENST00000639284, ENST00000866173, ENST00000866174, ENST00000866175, ENST00000866176, ENST00000866177, ENST00000925599, ENST00000925600, ENST00000925601, ENST00000925602, ENST00000970439, ENST00000970440
RefSeq mRNA: 2 — MANE Select: NM_016302
NM_001173482, NM_016302
CCDS: CCDS2562, CCDS54547
Canonical transcript exons
ENST00000231948 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000720924 | 3154747 | 3154831 |
| ENSE00003472985 | 3156219 | 3156281 |
| ENSE00003507301 | 3175163 | 3175269 |
| ENSE00003537389 | 3150011 | 3151045 |
| ENSE00003546323 | 3167634 | 3167793 |
| ENSE00003548901 | 3152456 | 3152587 |
| ENSE00003551349 | 3172776 | 3172925 |
| ENSE00003637887 | 3153960 | 3154075 |
| ENSE00003660350 | 3153424 | 3153488 |
| ENSE00003675249 | 3174059 | 3174261 |
| ENSE00003910438 | 3179621 | 3179691 |
Expression profiles
Bgee: expression breadth ubiquitous, 288 present calls, max score 98.11.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 27.7755 / max 789.4488, expressed in 1798 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 40822 | 27.7755 | 1798 |
Top tissues by expression
293 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 98.11 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 97.48 | gold quality |
| skin of hip | UBERON:0001554 | 96.56 | gold quality |
| biceps brachii | UBERON:0001507 | 96.51 | gold quality |
| endothelial cell | CL:0000115 | 96.50 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 96.50 | gold quality |
| superficial temporal artery | UBERON:0001614 | 96.36 | gold quality |
| cauda epididymis | UBERON:0004360 | 96.26 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 96.22 | gold quality |
| corpus callosum | UBERON:0002336 | 96.21 | gold quality |
| postcentral gyrus | UBERON:0002581 | 96.10 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 96.08 | gold quality |
| parietal pleura | UBERON:0002400 | 96.03 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 96.00 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 95.85 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 95.77 | gold quality |
| entorhinal cortex | UBERON:0002728 | 95.72 | gold quality |
| caput epididymis | UBERON:0004358 | 95.67 | gold quality |
| upper leg skin | UBERON:0004262 | 95.59 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 95.51 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 95.50 | gold quality |
| monocyte | CL:0000576 | 95.49 | gold quality |
| sural nerve | UBERON:0015488 | 95.47 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 95.45 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 95.44 | gold quality |
| visceral pleura | UBERON:0002401 | 95.42 | gold quality |
| mononuclear cell | CL:0000842 | 95.34 | gold quality |
| parietal lobe | UBERON:0001872 | 95.34 | gold quality |
| seminal vesicle | UBERON:0000998 | 95.24 | gold quality |
| leukocyte | CL:0000738 | 95.21 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.37 |
| E-CURD-112 | yes | 6.74 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NFE2L2
miRNA regulators (miRDB)
80 targeting CRBN, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548AS-5P | 99.94 | 71.22 | 3482 |
| HSA-MIR-548AU-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AY-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548B-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548BB-5P | 99.94 | 71.27 | 3509 |
| HSA-MIR-548C-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548D-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548H-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548I | 99.94 | 71.25 | 3481 |
Literature-anchored findings (GeneRIF, showing 40)
- A nonsense mutation causing a premature stop codon in CRBN was found in a large kindred with mild mental retardation. ATP-dependent degradation of proteins may play a role in memory and learning. (PMID:15557513)
- This may suggest new functions of CRBN in cell nucleolus besides its mitochondria protease activity in cytoplasm. (PMID:17380424)
- Nonsense mutation (R419X) CRBN disturbs the development of adult brain BK(Ca) isoforms. These changes are predicted to result in BK(Ca) channels with a higher intracellular Ca(2+) sensitivity, faster activation, and slower deactivation kinetics. (PMID:18414909)
- The results suggest that mutCRBN may cause ARNSID by disrupting the developmental regulation of BK(Ca) in brain regions that are critical for memory and learning. (PMID:20131966)
- CRBN directly interacts with the alpha1 subunit of AMP-activated protein kinase (AMPK alpha1) and inhibits the activation of AMPK activation. (PMID:21232561)
- CRBN is an essential requirement for immunoregulatory drugs activity and a possible biomarker for the clinical assessment of antimyeloma efficacy. (PMID:21860026)
- Data show that in a cereblon-dependent fashion, lenalidomide downregulates IRF4 and SPIB, transcription factors that together prevent IFNbeta production. (PMID:22698399)
- These findings suggest that CRBN may modulate proteasome activity by directly interacting with the beta7 subunit. (PMID:23026050)
- We conclude that CRBN expression may be associated with the clinical efficacy of thalidomide. (PMID:23233657)
- We investigated the role of CRBN in response to lenalidomide in myelodysplastic syndrome infants without chromosome 5 deletion. (PMID:23434730)
- Findings suggest an approach for the treatment of mental retardation associated with cereblon nonsense mutation. (PMID:23983124)
- CRBN and IRF4 have been shown to be associated with response to lenalidomide in patients, these findings do not translate back to HMCLs, which could be attributable to factors present in the bone marrow microenvironment. (PMID:23992230)
- CRBN expression may provide a biomarker to predict response to Immunomodulatory drugs in patients with MM and its high expression can serve as a marker of good prognosis. (PMID:24118365)
- Data indicate that low cereblon (CRBN) expression can predict resistance to immunomodulatory drug (IMiD monotherapy and is a predictive biomarker for survival outcomes. (PMID:24129344)
- In the three intrinsically IMiD-resistant cell lines that clearly express detectable levels of cereblon, the absence of CRBN and DDB1 mutations suggest that potential cereblon-independent mechanisms of resistance exist (PMID:24166296)
- Presents a molecular model in which drug binding to cereblon results in the interaction of Ikaros and Aiolos to CRL4(CRBN) , leading to their ubiquitination, subsequent proteasomal degradation and T cell activation. (PMID:24328678)
- CRBN expression in bone marrow myeloma cells is associated with superior treatment response to lenalidomide in refractory myeloma and thalidomide/dexamethasone in new patients. CRBN is a crucial factor for the anti-MM effect of immunomodulators. (PMID:24687382)
- Data suggest that cereblon (CRBN) expression in peripheral blood chronic lymphocytic leukemia (CLL) cells is independent of prognostic factors and may be considered a potential biomarker. (PMID:24925210)
- structures of the DDB1-CRBN complex bound to thalidomide, lenalidomide and pomalidomide (PMID:25043012)
- The study presents the crystal structure of human CRBN bound to DDB1 and the drug lenalidomide. (PMID:25108355)
- High levels of full-length CRBN mRNA in lower risk 5q deletion patients are necessary for the efficacy of lenalidomide. (PMID:25284710)
- Studied the protein cereblon , which has been recently indentified as a primary target of thalidomide and its C-terminal part as responsible for binding thalidomide within a domain carrying several invariant cysteine and tryptophan residues. (PMID:25569776)
- A copy number gain of CRBN gene might be responsible for developmental delay/intellectual disability. (PMID:25858704)
- Our data are consistent with the idea that the CUL4A/B-DDB1-CRBN complex catalyses the polyubiquitination and thus controls the degradation of CLC-1 channels. (PMID:26021757)
- Structural dynamics of the cereblon ligand binding domain. (PMID:26024445)
- The anti-PEL effects of IMiDs involved cereblon-dependent suppression of IRF4 and rapid degradation of IKZF1, but not IKZF3. Small hairpin RNA-mediated knockdown of MYC enhanced the cytotoxicity of IMiDs (PMID:26119939)
- dual assay demonstrated superior Cereblon IHC measurement in MM samples compared with the single IHC assay using a published commercial rabbit polyclonal Cereblon antibody and could be used to explore the potential utility of Cereblon as a biomarker in the clinic (PMID:26186254)
- Although abnormal CRBN function may be associated with intellectual disability disease onset, its cellular mechanism is still unclear. Here, we examine the role of CRBN in aggresome formation and cytoprotection. (PMID:26188093)
- GS is acetylated at lysines 11 and 14, yielding a degron that is necessary and sufficient for binding and ubiquitylation by CRL4(CRBN) and degradation by the proteasome. (PMID:26990986)
- These results support the notion that the cereblon binding partner AGO2 plays an important role in regulating MM cell growth and survival and AGO2 could be considered as a novel drug target for overcoming IMiD resistance in MM cells. (PMID:27142104)
- results suggest that CRBN binds to Ikaros via its N-terminal region and regulates transcriptional activities of Ikaros and its downstream target, enkephalin (PMID:27329811)
- 45.2 of multiple myeloma patients were CRBN(+). Among patients treated with thalidomide-based regimens, CRBN(+) patients showed a better treatment response than did CRBN-negative patients. There was no significant difference in survival outcomes between thalidomide- and bortezomib-based regimens in CRBN(+) patients. (PMID:27365142)
- mitochondrially expressed CRBN exhibited protease activity, and was induced by oxidative stress. (PMID:27417535)
- Compared with newly diagnosed multiple myeloma, an increased prevalence of mutations in the Ras pathway genes KRAS, NRAS, and/or BRAF (72%), as well as TP53 (26%), CRBN (12%), and CRBN pathway genes (10%) was observed. (PMID:27458004)
- overview of the current understanding of mechanism of action of Immunomodulatory drugs via CRBN and prospects for the development of new drugs that degrade protein of interest. (PMID:27460676)
- CRBN negatively regulates TLR4 signaling via attenuation of TRAF6 and TAB2 ubiquitination. (PMID:27468689)
- we identify Rabex-5 as a Immunomodulatory drugs (IMiDs) target molecule that functions to restrain TLR activated auto-immune promoting pathways. We propose that release of Rabex-5 from complex with Cereblon enables the suppression of immune responses, contributing to the antiinflammatory properties of IMiDs. (PMID:27601648)
- CRBN expression is of prognostic value in MM patients ineligible for ASCT treated with thalidomide as an immunomodulatory drug. With low expression indicating a possible suboptimal treatment outcome, measurement of CRBN expression might serve as additional prognostic tool in the personalized treatment approach. (PMID:27618360)
- We sequenced CRBN-thalidomide binding region in 38 thalidomide embryopathy individuals and 136 Brazilians without congenital anomalies, and performed in silico analyses. Eight variants were identified, seven intronic and one in 3’UTR. (PMID:27751757)
- High CRBN expression is associated with multiple myeloma. (PMID:28017969)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | crbn | ENSDARG00000054250 |
| mus_musculus | Crbn | ENSMUSG00000005362 |
| rattus_norvegicus | Crbn | ENSRNOG00000006534 |
| drosophila_melanogaster | ohgt | FBGN0037780 |
| caenorhabditis_elegans | WBGENE00010891 |
Protein
Protein identifiers
Protein cereblon — Q96SW2 (reviewed: Q96SW2)
All UniProt accessions (4): Q96SW2, A0A1W2PPJ5, J3QT51, J3QT87
UniProt curated annotations — full annotation on UniProt →
Function. Substrate recognition component of a DCX (DDB1-CUL4-X-box) E3 protein ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins, such as MEIS2, ILF2 or GLUL. Normal degradation of key regulatory proteins is required for normal limb outgrowth and expression of the fibroblast growth factor FGF8. Maintains presynaptic glutamate release and consequently cognitive functions, such as memory and learning, by negatively regulating large-conductance calcium-activated potassium (BK) channels in excitatory neurons. Likely to function by regulating the assembly and neuronal surface expression of BK channels via its interaction with KCNT1. May also be involved in regulating anxiety-like behaviors via a BK channel-independent mechanism. Plays a negative role in TLR4 signaling by interacting with TRAF6 and ECSIT, leading to inhibition of ECSIT ubiquitination, an important step of the signaling.
Subunit / interactions. Interacts with KCNT1. Component of a DCX (DDB1-CUL4-X-box) protein ligase complex, at least composed of CRBN, CUL4A, DDB1 and RBX1. Interacts directly with DDB1. Interacts (in pomalidomide-bound form) with IKZF1 and IKZF3. Interacts with ILF2. Interacts with TRAF6 and ECSIT.
Subcellular location. Cytoplasm. Nucleus. Membrane.
Tissue specificity. Widely expressed. Highly expressed in brain.
Post-translational modifications. Ubiquitinated, ubiquitination is mediated by its own DCX protein ligase complex.
Disease relevance. Intellectual developmental disorder, autosomal recessive 2 (MRT2) [MIM:607417] A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. MRT2 patients display mild intellectual disability with a standard IQ ranged from 50 to 70. IQ scores are lower in males than females. Developmental milestones are mildly delayed. There are no dysmorphic or autistic features. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The CULT domain binds thalidomide and related drugs, such as pomalidomide and lenalidomide. Drug binding leads to a change in substrate specificity of the human DCX (DDB1-CUL4-X-box) E3 protein ligase complex, while no such change is observed in rodents.
Pathway. Protein modification; protein ubiquitination.
Miscellaneous. Thalidomide was widely prescribed to pregnant women in the late 1950s as a sedative and as treatment against morning sickness. Thalidomide was found to be teratogenic, causing multiple birth defects. More recently, thalidomide use has increased for the treatment of multiple myeloma and erythema nodosum leprosum, a painful complication of leprosy. Binding of pomalidomide and other thalidomide-related drugs leads to a change in substrate specificity of the human DCX (DDB1-CUL4-X-box) E3 protein ligase complex, and this is probably the underlying cause of the teratogenic activity of thalidomide, possibly due to abnormal regulation of the BMP and FGF8 signaling pathways. The thalidomide-induced change in substrate specificity leads to decreased degradation of MEIS2 and other target proteins and increased degradation of MYC, IRF4, IKZF1 and IKZF3, and this is probably the reason for the anti-proliferative and immunomodulatory effects of thalidomide and related drugs. Thalidomide is also teratogenic in chicken and zebrafish, but not in mice.
Similarity. Belongs to the CRBN family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96SW2-1 | 1 | yes |
| Q96SW2-2 | 2 |
RefSeq proteins (2): NP_001166953, NP_057386* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003111 | Lon_prtase_N | Domain |
| IPR004910 | Yippee/Mis18/Cereblon | Domain |
| IPR015947 | PUA-like_sf | Homologous_superfamily |
| IPR034750 | CULT | Domain |
| IPR046336 | Lon_prtase_N_sf | Homologous_superfamily |
Pfam: PF02190, PF03226
UniProt features (66 total): strand 22, helix 16, binding site 7, turn 6, sequence conflict 4, mutagenesis site 3, domain 2, chain 1, modified residue 1, splice variant 1, sequence variant 1, region of interest 1, compositionally biased region 1
Structure
Experimental structures (PDB)
90 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4M91 | X-RAY DIFFRACTION | 1.1 |
| 9CUO | X-RAY DIFFRACTION | 1.6 |
| 9OHQ | X-RAY DIFFRACTION | 1.6 |
| 9DOM | X-RAY DIFFRACTION | 1.69 |
| 7BQV | X-RAY DIFFRACTION | 1.8 |
| 9O91 | X-RAY DIFFRACTION | 1.86 |
| 7BQU | X-RAY DIFFRACTION | 1.9 |
| 9GAO | X-RAY DIFFRACTION | 1.95 |
| 9FJX | X-RAY DIFFRACTION | 2 |
| 8RQC | X-RAY DIFFRACTION | 2.15 |
| 8RQ8 | X-RAY DIFFRACTION | 2.19 |
| 9OHR | X-RAY DIFFRACTION | 2.34 |
| 9SFM | X-RAY DIFFRACTION | 2.39 |
| 8TNQ | ELECTRON MICROSCOPY | 2.41 |
| 9ODR | X-RAY DIFFRACTION | 2.42 |
| 5FQD | X-RAY DIFFRACTION | 2.45 |
| 8OIZ | X-RAY DIFFRACTION | 2.5 |
| 8RQA | X-RAY DIFFRACTION | 2.5 |
| 8TNR | ELECTRON MICROSCOPY | 2.5 |
| 9GY3 | X-RAY DIFFRACTION | 2.5 |
| 9OS2 | ELECTRON MICROSCOPY | 2.5 |
| 9SAF | ELECTRON MICROSCOPY | 2.55 |
| 11MR | ELECTRON MICROSCOPY | 2.6 |
| 9ODS | X-RAY DIFFRACTION | 2.61 |
| 9SAI | ELECTRON MICROSCOPY | 2.66 |
| 9OUK | ELECTRON MICROSCOPY | 2.69 |
| 9NWS | ELECTRON MICROSCOPY | 2.7 |
| 9NWT | ELECTRON MICROSCOPY | 2.7 |
| 8OJH | X-RAY DIFFRACTION | 2.72 |
| 9D0X | ELECTRON MICROSCOPY | 2.84 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96SW2-F1 | 86.87 | 0.72 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (7): 391; 394; 323; 326; 378; 380; 386
Post-translational modifications (1): 25
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 384 | abolishes thalidomide-binding without affecting dcx protein ligase complex activity; when associated with a-386. |
| 386 | abolishes thalidomide-binding without affecting dcx protein ligase complex activity; when associated with a-384. abolish |
| 419–442 | fails to rescue increased bk channel activity and decreased probability of neurotransmission in a mouse hippocampal neur |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-9679191 | Potential therapeutics for SARS |
MSigDB gene sets: 222 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_UP, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_CONTAINING_COMPLEX_ASSEMBLY, GOBP_NEGATIVE_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, GOBP_BEHAVIOR, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_REGULATION_OF_WNT_SIGNALING_PATHWAY, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_POSITIVE_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOBP_NEGATIVE_REGULATION_OF_TRANSPORT, MILI_PSEUDOPODIA_HAPTOTAXIS_UP, MODULE_480, GOBP_APPENDAGE_DEVELOPMENT, GOBP_REGULATION_OF_PROTEIN_CONTAINING_COMPLEX_ASSEMBLY, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION
GO Biological Process (8): protein ubiquitination (GO:0016567), positive regulation of Wnt signaling pathway (GO:0030177), negative regulation of protein-containing complex assembly (GO:0031333), positive regulation of protein-containing complex assembly (GO:0031334), negative regulation of monoatomic ion transmembrane transport (GO:0034766), locomotory exploration behavior (GO:0035641), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), limb development (GO:0060173)
GO Molecular Function (3): transmembrane transporter binding (GO:0044325), metal ion binding (GO:0046872), protein binding (GO:0005515)
GO Cellular Component (6): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), membrane (GO:0016020), Cul4A-RING E3 ubiquitin ligase complex (GO:0031464), perinuclear region of cytoplasm (GO:0048471)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| SARS-CoV Infections | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| regulation of protein-containing complex assembly | 2 |
| protein-containing complex assembly | 2 |
| cytoplasm | 2 |
| protein modification by small protein conjugation | 1 |
| positive regulation of signal transduction | 1 |
| Wnt signaling pathway | 1 |
| regulation of Wnt signaling pathway | 1 |
| negative regulation of cellular component organization | 1 |
| positive regulation of cellular component biogenesis | 1 |
| positive regulation of cellular component organization | 1 |
| monoatomic ion transmembrane transport | 1 |
| negative regulation of transmembrane transport | 1 |
| regulation of monoatomic ion transmembrane transport | 1 |
| negative regulation of monoatomic ion transport | 1 |
| locomotory behavior | 1 |
| exploration behavior | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| proteasomal protein catabolic process | 1 |
| appendage development | 1 |
| protein binding | 1 |
| cation binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| Cul4-RING E3 ubiquitin ligase complex | 1 |
Protein interactions and networks
STRING
1662 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CRBN | CUL4A | Q13619 | 999 |
| CRBN | DDB1 | Q16531 | 999 |
| CRBN | RBX1 | P62877 | 998 |
| CRBN | IKZF1 | Q13422 | 997 |
| CRBN | IKZF3 | Q9UKT9 | 997 |
| CRBN | CUL4B | Q13620 | 992 |
| CRBN | KCNMA1 | Q12791 | 888 |
| CRBN | CSNK1A1 | P48729 | 885 |
| CRBN | GSPT1 | P15170 | 878 |
| CRBN | LONP2 | Q86WA8 | 855 |
| CRBN | PRSS12 | P56730 | 846 |
| CRBN | BTK | Q06187 | 836 |
| CRBN | LONP1 | P36776 | 827 |
| CRBN | CC2D1A | Q6P1N0 | 802 |
| CRBN | BRD4 | O60885 | 795 |
IntAct
68 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CUL4B | COPS2 | psi-mi:“MI:0914”(association) | 0.790 |
| COPS6 | RHOBTB1 | psi-mi:“MI:0914”(association) | 0.730 |
| CRBN | DDB1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| PAK5 | CRBN | psi-mi:“MI:0915”(physical association) | 0.670 |
| CRBN | PAK5 | psi-mi:“MI:0915”(physical association) | 0.670 |
| CRBN | CUL4A | psi-mi:“MI:0914”(association) | 0.650 |
| CRBN | CSNK1A1 | psi-mi:“MI:0914”(association) | 0.640 |
| CRBN | CSNK1A1 | psi-mi:“MI:0915”(physical association) | 0.640 |
| CUL4A | COPS2 | psi-mi:“MI:0914”(association) | 0.640 |
| TGIF2LY | PGP | psi-mi:“MI:0914”(association) | 0.640 |
| RBPMS | CRBN | psi-mi:“MI:0915”(physical association) | 0.560 |
| MISP | CRBN | psi-mi:“MI:0915”(physical association) | 0.560 |
| CRBN | psi-mi:“MI:0915”(physical association) | 0.560 | |
| CRBN | PMP22 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KLF11 | CRBN | psi-mi:“MI:0915”(physical association) | 0.560 |
| COL26A1 | CRBN | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (471): CRBN (Two-hybrid), PAK7 (Two-hybrid), CLCN1 (Affinity Capture-Western), CRBN (Two-hybrid), CRBN (Two-hybrid), CRBN (Two-hybrid), CUL4A (Affinity Capture-Western), DDB1 (Affinity Capture-Western), CRBN (Affinity Capture-Western), DDB1 (Affinity Capture-Western), CUL4A (Affinity Capture-Western), CRBN (Affinity Capture-MS), CRBN (Affinity Capture-MS), CRBN (Affinity Capture-MS), CRBN (Affinity Capture-MS)
ESM2 similar proteins: A0JM23, A7E2V1, D2HRF1, E1BVR9, F1ND48, F6Y9J3, O02697, O94952, P0CF65, P0CI65, P42338, P48736, Q32PJ3, Q32PY6, Q3U3W5, Q3UMR0, Q4R3W5, Q4R6Y8, Q56AP7, Q5R5S1, Q5R6Y2, Q5R9R1, Q5REW9, Q5T8I9, Q5U2X1, Q5U2Z5, Q6AZT7, Q6P2P2, Q6P3K3, Q7TNH6, Q7Z494, Q80V94, Q8BGG7, Q8BK06, Q8BTI9, Q8C7D2, Q8CAE2, Q8CD92, Q8NEC7, Q8TF42
Diamond homologs: P0CF65, Q0P564, Q56AP7, Q5R6Y2, Q640S2, Q68EH9, Q8C7D2, Q96SW2
SIGNOR signaling
12 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| 2-(2,6-dioxopiperidin-3-yl)-1H-isoindole-1,3(2H)-dione | “up-regulates activity” | CRBN | “chemical activation” |
| CRBN | “form complex” | Cullin4-RBX1-DDB1 | binding |
| lenalidomide | “up-regulates activity” | CRBN | “chemical activation” |
| pomalidomide | “down-regulates activity” | CRBN | “chemical inhibition” |
| lenalidomide | “down-regulates activity” | CRBN | “chemical inhibition” |
| CRBN | “down-regulates quantity by destabilization” | SALL4 | ubiquitination |
| thalidomide | “down-regulates activity” | CRBN | “chemical inhibition” |
| CRBN | “down-regulates quantity by destabilization” | SALL4 | binding |
| CRBN | “down-regulates quantity by destabilization” | TP63 | polyubiquitination |
| FBXO7 | “down-regulates quantity by destabilization” | CRBN | binding |
| “Cullin 1-RBX1-Skp1” | “down-regulates quantity by destabilization” | CRBN | polyubiquitination |
| CRBN | “down-regulates quantity by destabilization” | IKZF3 | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 49 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| DNA Damage Recognition in GG-NER | 7 | 60.6× | 4e-09 |
| Formation of TC-NER Pre-Incision Complex | 7 | 44.9× | 2e-08 |
| Neddylation | 8 | 11.5× | 3e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cellular response to UV | 5 | 34.4× | 8e-05 |
| DNA damage response | 6 | 7.5× | 9e-03 |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
126 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 5 |
| Likely pathogenic | 6 |
| Uncertain significance | 74 |
| Likely benign | 17 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (11)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1032731 | NM_016302.4(CRBN):c.433C>T (p.Arg145Ter) | Pathogenic |
| 1321315 | NM_016302.4(CRBN):c.129dup (p.Pro44fs) | Pathogenic |
| 4071608 | NM_016302.4(CRBN):c.846_847del (p.Tyr282_Arg283delinsTer) | Pathogenic |
| 984705 | NM_016302.4(CRBN):c.835+1G>A | Pathogenic |
| 987486 | NM_016302.4(CRBN):c.807dup (p.Asp270fs) | Pathogenic |
| 1180660 | NM_016302.4(CRBN):c.913_914dup (p.Gln306fs) | Likely pathogenic |
| 1196420 | NM_016302.4(CRBN):c.235C>T (p.Gln79Ter) | Likely pathogenic |
| 1684148 | NM_016302.4(CRBN):c.791G>A (p.Trp264Ter) | Likely pathogenic |
| 1690413 | NM_016302.4(CRBN):c.124A>T (p.Lys42Ter) | Likely pathogenic |
| 800320 | NM_016302.4(CRBN):c.1100A>T (p.Asn367Ile) | Likely pathogenic |
| 816985 | NM_016302.4(CRBN):c.641C>G (p.Ser214Ter) | Likely pathogenic |
SpliceAI
2982 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:3146532:GATT:G | donor_gain | 1.0000 |
| 3:3151043:TAC:T | acceptor_gain | 1.0000 |
| 3:3151046:CTAAG:C | acceptor_loss | 1.0000 |
| 3:3153418:CCTTA:C | donor_loss | 1.0000 |
| 3:3153419:CTTA:C | donor_loss | 1.0000 |
| 3:3153420:TTA:T | donor_loss | 1.0000 |
| 3:3153484:GTACA:G | acceptor_gain | 1.0000 |
| 3:3153485:TACA:T | acceptor_gain | 1.0000 |
| 3:3153486:ACA:A | acceptor_gain | 1.0000 |
| 3:3153487:CA:C | acceptor_gain | 1.0000 |
| 3:3153487:CAC:C | acceptor_gain | 1.0000 |
| 3:3153488:AC:A | acceptor_loss | 1.0000 |
| 3:3153489:C:CC | acceptor_gain | 1.0000 |
| 3:3153489:C:T | acceptor_loss | 1.0000 |
| 3:3153958:A:AC | donor_gain | 1.0000 |
| 3:3153959:C:CC | donor_gain | 1.0000 |
| 3:3167633:CCTT:C | donor_gain | 1.0000 |
| 3:3167792:TT:T | acceptor_gain | 1.0000 |
| 3:3167794:C:CC | acceptor_gain | 1.0000 |
| 3:3167794:CTAAA:C | acceptor_loss | 1.0000 |
| 3:3172770:TCTTA:T | donor_loss | 1.0000 |
| 3:3172771:CTTA:C | donor_loss | 1.0000 |
| 3:3172772:TTA:T | donor_loss | 1.0000 |
| 3:3172773:TA:T | donor_loss | 1.0000 |
| 3:3172774:A:AC | donor_gain | 1.0000 |
| 3:3172774:A:AG | donor_loss | 1.0000 |
| 3:3172775:C:CC | donor_gain | 1.0000 |
| 3:3172775:CCCAT:C | donor_gain | 1.0000 |
| 3:3172779:T:C | donor_gain | 1.0000 |
| 3:3172795:G:C | donor_gain | 1.0000 |
AlphaMissense
2926 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:3150988:A:C | F402L | 1.000 |
| 3:3150988:A:T | F402L | 1.000 |
| 3:3150990:A:G | F402L | 1.000 |
| 3:3150994:C:A | W400C | 1.000 |
| 3:3150994:C:G | W400C | 1.000 |
| 3:3150996:A:G | W400R | 1.000 |
| 3:3150996:A:T | W400R | 1.000 |
| 3:3150998:C:T | G399E | 1.000 |
| 3:3151023:A:G | C391R | 1.000 |
| 3:3152466:A:G | W380R | 1.000 |
| 3:3152466:A:T | W380R | 1.000 |
| 3:3153988:A:G | L308P | 1.000 |
| 3:3154069:G:A | S281F | 1.000 |
| 3:3150944:A:G | L417S | 0.999 |
| 3:3150951:A:G | W415R | 0.999 |
| 3:3150951:A:T | W415R | 0.999 |
| 3:3150952:A:C | F414L | 0.999 |
| 3:3150952:A:T | F414L | 0.999 |
| 3:3150953:A:G | F414S | 0.999 |
| 3:3150954:A:G | F414L | 0.999 |
| 3:3150989:A:G | F402S | 0.999 |
| 3:3150995:C:G | W400S | 0.999 |
| 3:3150998:C:A | G399V | 0.999 |
| 3:3150999:C:G | G399R | 0.999 |
| 3:3150999:C:T | G399R | 0.999 |
| 3:3151014:A:G | C394R | 0.999 |
| 3:3151021:A:C | C391W | 0.999 |
| 3:3151022:C:G | C391S | 0.999 |
| 3:3151022:C:T | C391Y | 0.999 |
| 3:3151023:A:T | C391S | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000042317 (3:3161373 T>C), RS1000079919 (3:3150141 T>C,G), RS1000102252 (3:3166882 G>C), RS1000229379 (3:3180946 A>C,T), RS1000721359 (3:3163932 T>C), RS1000869085 (3:3168566 A>G,T), RS1000898777 (3:3168310 A>C,G), RS1000905850 (3:3171923 C>T), RS1000961434 (3:3149261 A>ATACTT), RS1000967373 (3:3150267 TTCGTGGGCTCAA>T), RS1001032166 (3:3177198 C>T), RS1001131559 (3:3173213 A>G), RS1001232881 (3:3171338 A>G), RS1001460575 (3:3177010 A>T), RS1001567010 (3:3176604 T>C)
Disease associations
OMIM: gene MIM:609262 | disease phenotypes: MIM:607417, MIM:254500
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal recessive non-syndromic intellectual disability | Supportive | Autosomal recessive |
| intellectual disability, autosomal recessive 2 | Limited | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| intellectual disability | Moderate | AR |
Mondo (4): intellectual disability, autosomal recessive 2 (MONDO:0011828), intellectual disability (MONDO:0001071), plasma cell myeloma (MONDO:0009693), autosomal recessive non-syndromic intellectual disability (MONDO:0019502)
Orphanet (4): Autosomal recessive non-syndromic intellectual disability (Orphanet:88616), Multiple myeloma (Orphanet:29073), AL amyloidosis (Orphanet:85443), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
10 total (10 of 10 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0001250 | Seizure |
| HP:0001256 | Mild intellectual disability |
| HP:0001263 | Global developmental delay |
| HP:0001344 | Absent speech |
| HP:0003593 | Infantile onset |
| HP:0007018 | Attention deficit hyperactivity disorder |
| HP:0010864 | Severe intellectual disability |
| HP:0031936 | Delayed ability to walk |
| HP:0100716 | Self-injurious behavior |
GWAS associations
13 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001491_7 | Immune response to smallpox vaccine (IL-6) | 8.000000e-07 |
| GCST001760_5 | White matter integrity | 6.000000e-06 |
| GCST002337_146 | Amyotrophic lateral sclerosis (sporadic) | 4.000000e-06 |
| GCST003820_6 | Knee osteoarthritis | 8.000000e-06 |
| GCST004618_59 | White blood cell count (basophil) | 1.000000e-26 |
| GCST004631_58 | Basophil percentage of white cells | 1.000000e-28 |
| GCST004634_18 | Basophil percentage of granulocytes | 3.000000e-25 |
| GCST005042_6 | Restless legs syndrome | 2.000000e-13 |
| GCST005976_14 | White blood cell count (basophil) | 3.000000e-20 |
| GCST010725_42 | Malaria | 5.000000e-07 |
| GCST010725_55 | Malaria | 9.000000e-07 |
| GCST90002379_35 | Basophil count | 7.000000e-17 |
| GCST90002380_136 | Basophil percentage of white cells | 2.000000e-17 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004645 | response to vaccine |
| EFO:0004641 | white matter integrity |
| EFO:0005090 | basophil count |
| EFO:0007992 | basophil percentage of leukocytes |
| EFO:0007995 | basophil percentage of granulocytes |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D009101 | Multiple Myeloma | C04.557.595.500; C14.907.454.460; C15.378.147.780.650; C15.378.463.515.460; C20.683.515.845; C20.683.780.650 |
| C564404 | Mental Retardation, Autosomal Recessive 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (303): CHEMBL3763008 (SINGLE PROTEIN), CHEMBL3833061 (PROTEIN COMPLEX), CHEMBL4296102 (PROTEIN COMPLEX), CHEMBL4296103 (PROTEIN COMPLEX), CHEMBL4296125 (PROTEIN-PROTEIN INTERACTION), CHEMBL4296126 (PROTEIN-PROTEIN INTERACTION), CHEMBL4296127 (PROTEIN-PROTEIN INTERACTION), CHEMBL4296128 (PROTEIN-PROTEIN INTERACTION), CHEMBL4296129 (PROTEIN-PROTEIN INTERACTION), CHEMBL4296130 (PROTEIN-PROTEIN INTERACTION)
Molecules with ChEMBL bioactivity
18 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 392,290 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL3137312 | DASABUVIR | 4 | 1,088 |
| CHEMBL43452 | POMALIDOMIDE | 4 | 13,354 |
| CHEMBL468 | THALIDOMIDE | 4 | 97,393 |
| CHEMBL848 | LENALIDOMIDE | 4 | 5,256 |
| CHEMBL1171837 | PONATINIB | 4 | 8,955 |
| CHEMBL4208229 | ASCIMINIB | 4 | 882 |
| CHEMBL3545311 | BRIGATINIB | 4 | 5,634 |
| CHEMBL601719 | CRIZOTINIB | 4 | 14,403 |
| CHEMBL3989927 | IBERDOMIDE | 3 | 1,300 |
| CHEMBL566 | URACIL | 3 | 235,501 |
| CHEMBL5095210 | VEPDEGESTRANT | 3 | 336 |
| CHEMBL4648616 | MEZIGDOMIDE | 3 | 477 |
| CHEMBL3989934 | AVADOMIDE | 2 | 1,506 |
| CHEMBL4297376 | E-7820 | 2 | 476 |
| CHEMBL77517 | INDISULAM | 2 | 799 |
| CHEMBL1976040 | ADAVOSERTIB | 2 | 1,738 |
| CHEMBL1230609 | FORETINIB | 2 | 3,096 |
| CHEMBL4297459 | CC-11006 | 1 | 96 |
Clinical evidence (CIViC)
Drug × variant × indication: 1 predictive associations from 1 curated evidence items.
| Variant | Therapy | Indication | Effect | Level | CIViC |
|---|---|---|---|---|---|
| CRBN Mutation | Lenalidomide + Pomalidomide | Multiple Myeloma | Resistance | CIViC C | EID1766 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1705814 | CRBN | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — E3 ubiquitin ligase components
Most potent curated ligand interactions (21 total), top 21:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| AK-2292 | Binding | 9.77 | pKi |
| MG-277 | Binding | 8.51 | pIC50 |
| thalidomide | Binding | 8.07 | pKd |
| MD-222 | Binding | 8.0 | pIC50 |
| TL12-186 | Binding | 7.92 | pIC50 |
| SJ995973 | Binding | 7.77 | pIC50 |
| compound 7f [PMID: 31251063] | Binding | 7.7 | pKi |
| mezigdomide | Binding | 7.52 | pIC50 |
| dBRD9 | Binding | 7.5 | pIC50 |
| avadomide | Binding | 7.27 | pIC50 |
| iberdomide | Binding | 7.22 | pIC50 |
| dTAG-13 | Binding | 7.19 | pIC50 |
| PTD10 | Binding | 6.97 | pIC50 |
| NVP-DKY709 | Binding | 6.89 | pIC50 |
| SK5527 | Binding | 5.95 | pKi |
| pomalidomide | Binding | 5.92 | pIC50 |
| TX-16 | Binding | 5.85 | pKi |
| lenalidomide | Binding | 5.82 | pIC50 |
| CBPD-268 | Binding | 5.74 | pIC50 |
| SB-405483 | Allosteric modulator | 5.6 | pKd |
| MS40 | Binding | 4.83 | pKd |
Binding affinities (BindingDB)
998 measured of 1565 human assays (1876 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 3-[4-[[(1R)-1-(4-methoxyphenyl)ethyl]amino]-1,3-dihydroisoindol-2-yl]piperidine-2,6-dione | KD | 16 nM | US-20250129041: MOLECULAR GLUE AND USES THEREOF |
| 3-(1-oxo-5-(7-(pyrrolidin-1- ylmethyl)imidazo[1,5-a]pyridin-5- yl)isoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(6-(((2,6-dichloro- phenethyl)amino)methyl)imi- dazo[1,2-a]pyridin-8-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(7-(azetidin-1- ylmethyl)imidazo[1,5-a]pyridin-5- yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(1-oxo-5-(7-(piperidin-1- ylmethyl)imidazo[1,5-a]pyridin-5- yl)isoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(6-(((2-chloro- phenethyl)amino)methyl)imi- dazo[1,2-a]pyridin-8-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(1-oxo-5-(6-(((1- phenylethyl)amino)methyl)imidazo [1,2-a]pyridin-8-yl)isoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(7-((3-methylpyrrolidin-1- yl)methyl)imidazo[1,5-a]pyridin-5- yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(1-oxo-5-(6-(((2-phenylpropan- 2-yl)amino)methyl)imidazo[1,2- a]pyridin-8-yl)isoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(1-oxo-5-(6-((2- phenylpyrrolidin-1- yl)methyl)imidazo[1,2-a]pyridin-8- yl)isoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(6-(((2- chlorophenethyl)amino)methyl)-1- methyl-1H-benzo[d]imidazol-4- yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(7-((diethylamino)methyl) imidazo[1,5-a]pyridin-5-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(7- ((benzylamino)methyl)imidazo[1,5- a]pyridin-5-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(1-oxo-5-(7-((((S*)-1- phenylethyl)amino)methyl)imidazo [1,5-a]pyridin-5-yl)isoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(1-methyl-4-(pyrrolidin-1- ylmethyl)-1H-pyrrolo[2,3- b]pyridin-6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(1-methyl-4-(piperidin-1- ylmethyl)-1H-pyrrolo[2,3- b]pyridin-6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(1-oxo-5-(4-(pyrrolidin-1- ylmethyl)-1H-pyrrolo[2,3- b]pyridin-6-yl)isoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(7-(((2- chlorophenethyl)amino)methyl)imi- dazo[1,5-a]pyridin-5-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(1-methyl-4- (thiomorpholinomethyl)-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(1-methyl-4-((tetrahydro-1H- furo[3,4-c]pyrrol-5(3H)- yl)methyl)-1H-pyrrolo[2,3- b]pyridin-6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4-((6-azaspiro[2.5]octan-6- yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(7-((((1-methyl-1H-indol-7- yl)methyl)amino)methyl)imi- dazo[1,5-a]pyridin-5-yl)-1- oxoisoindolin- 2-yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4-((3,4-dihydroisoquinolin- 2(1H)-yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(1-oxo-5-(7-((2- phenylpyrrolidin-1- yl)methyl)imidazo[1,5-a]pyridin-5- yl)isoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4-((3- azabicyclo[3.1.0]hexan-3- yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4-((7-azaspiro[3.5]nonan-7- yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(4-methoxy-1-oxo-5-(7- (pyrrolidin-1- ylmethyl)imidazo[1,5-a]pyridin-5- yl)isoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(1-methyl-4-((2- phenylazetidin-1-yl)methyl)-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(7-methoxy-1-oxo-5-(7- (pyrrolidin-1- ylmethyl)imidazo[1,5-a]pyridin-5- yl)isoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4- ((hexahydrocyclopenta[c]pyrrol- 2(1H)-yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(1-oxo-5-(6-(piperidin-1- ylmethyl)imidazo[1,2-a]pyridin-8- yl)isoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4-((2-oxa-7- azaspiro[3.5]nonan-7-yl)methyl)-1- methyl-1H-pyrrolo[2,3-b]pyridin- 6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(6-((4,4-difluoropiperidin-1- yl)methyl)imidazo[1,2-a]pyridin-8- yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(4-fluoro-5-(1-methyl-4- (pyrrolidin-1-ylmethyl)-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(6-((4,4-dimethylpiperidin-1- yl)methyl)imidazo[1,2-a]pyridin-8- yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(6-(((2-chloro- benzyl)amino)methyl)imidazo [1,2-a]pyridin-8-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(1-oxo-5-(4-(pyrrolidin-1- ylmethyl)-5,6,7,8- tetrahydroquinolin-2-yl)isoindolin- 2-yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(6-(((2,4-dichloro- phenethyl)amino)methyl)imi- dazo[1,2-a]pyridin-8-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(1-oxo-5-(4-(pyrrolidin-1- ylmethyl)-6,7-dihydro-5H- cyclopenta[b]pyridin-2- yl)isoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(1-oxo-5-(4-(pyrrolidin-1- ylmethyl)-1-(tetrahydro-2H-pyran- 4-yl)-1H-pyrrolo[2,3-b]pyridin-6- yl)isoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4-((3-methoxyazetidin-1- yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(1-methyl-4-(1-(pyrrolidin-1- yl)ethyl)-1H-pyrrolo[2,3-b]pyridin- 6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(1-methyl-4-((4- (trifluoromethyl)piperidin-1- yl)methyl)-1H-pyrrolo[2,3- b]pyridin-6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4-((3-methoxypyrrolidin-1- yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(1-(oxetan-3-yl)-4- ((tetrahydro-1H-furo[3,4-c]pyrrol- 5(3H)-yl)methyl)-1H-pyrrolo[2,3- b]pyridin-6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4-((4-fluoropiperidin-1- yl)methyl)-1-(oxetan-3-yl)-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4-((hexahydropyrrolo[1,2- a]pyrazin-2(1H)-yl)methyl)-1- methyl-1H-pyrrolo[2,3-b]pyridin- 6-yl)-1-oxoisoindolin-2- yl)piperidine-2,6-dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4-((3- (hydroxymethyl)pyrrolidin-1- yl)methyl)-1-methyl-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4-((4-methoxypiperidin-1- yl)methyl)-1-(oxetan-3-yl)-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
| 3-(5-(4-((4- (dimethylamino)piperidin-1- yl)methyl)-1-(oxetan-3-yl)-1H- pyrrolo[2,3-b]pyridin-6-yl)-1- oxoisoindolin-2-yl)piperidine-2,6- dione | IC50 | 20 nM | US-20250214991: BICYCLIC HETEROARYL-CONTAINING COMPOUNDS AS IKZF2 DEGRADERS |
ChEMBL bioactivities
1297 potent at pChembl≥5 of 1585 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.73 | EC50 | 0.0187 | nM | CHEMBL5076100 |
| 10.70 | IC50 | 0.02 | nM | CHEMBL5090416 |
| 10.66 | EC50 | 0.022 | nM | CHEMBL5414378 |
| 10.62 | EC50 | 0.0238 | nM | CHEMBL5207946 |
| 10.56 | EC50 | 0.0276 | nM | CHEMBL5200341 |
| 10.15 | EC50 | 0.0714 | nM | CHEMBL5193611 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL4645677 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL4640365 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL4638224 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL4636670 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL4647905 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL4647587 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL4637801 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL4645982 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL4636184 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL4644660 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL4637622 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL4879244 |
| 10.00 | EC50 | 0.1 | nM | CHEMBL5094191 |
| 9.96 | Kd | 0.11 | nM | CHEMBL4748640 |
| 9.89 | Kd | 0.13 | nM | CHEMBL4742867 |
| 9.85 | Kd | 0.14 | nM | CHEMBL5561819 |
| 9.70 | EC50 | 0.2 | nM | CHEMBL4641034 |
| 9.70 | EC50 | 0.2 | nM | CHEMBL4642904 |
| 9.70 | EC50 | 0.2 | nM | CHEMBL4741262 |
| 9.70 | EC50 | 0.2 | nM | CHEMBL4747369 |
| 9.66 | Kd | 0.22 | nM | CHEMBL5563992 |
| 9.64 | Kd | 0.23 | nM | CHEMBL4747034 |
| 9.61 | IC50 | 0.244 | nM | CHEMBL5178566 |
| 9.59 | Kd | 0.26 | nM | CHEMBL4747034 |
| 9.55 | Kd | 0.28 | nM | CHEMBL4748640 |
| 9.52 | EC50 | 0.3 | nM | CHEMBL4645692 |
| 9.52 | EC50 | 0.3 | nM | CHEMBL4642197 |
| 9.52 | EC50 | 0.3 | nM | CHEMBL4646021 |
| 9.52 | EC50 | 0.3 | nM | CHEMBL4648954 |
| 9.52 | EC50 | 0.3 | nM | CHEMBL4877348 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL6133093 |
| 9.51 | IC50 | 0.31 | nM | CHEMBL4744617 |
| 9.49 | Kd | 0.32 | nM | CHEMBL4642168 |
| 9.47 | Kd | 0.34 | nM | CHEMBL5561261 |
| 9.43 | Kd | 0.37 | nM | CHEMBL5567457 |
| 9.42 | Kd | 0.38 | nM | CHEMBL4742867 |
| 9.42 | Kd | 0.38 | nM | CHEMBL5567766 |
| 9.40 | EC50 | 0.4 | nM | CHEMBL4642361 |
| 9.40 | EC50 | 0.4 | nM | CHEMBL4639846 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL4760508 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL4745409 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL4800591 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL4745755 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL4754618 |
PubChem BioAssay actives
389 with measured affinity, of 6100 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-[4-[4-[4-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]piperazine-1-carbonyl]piperidin-1-yl]phenyl]-2-phenoxypyrimidine-5-carboxamide | 1858479: PROTAC activity at CRBN/H-PGDS in human KU812 cells assessed as reduction in H-PGDS levels incubated for 24 hrs by Western blotting analysis | ec50 | <0.0001 | uM |
| 4-[[4-[1-[3-(cyanomethyl)-1-ethylsulfonylazetidin-3-yl]pyrazol-4-yl]-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]-N-[3-[4-[4-(2,6-dioxopiperidin-3-yl)phenyl]piperazin-1-yl]propyl]benzamide | 1827294: Binding affinity to CRBN (unknown origin) measured by Fluorescent Polarization assay | ic50 | <0.0001 | uM |
| N-[4-[4-[4-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-5-yl]piperazine-1-carbonyl]piperidin-1-yl]phenyl]-2-phenoxypyrimidine-5-carboxamide | 1858479: PROTAC activity at CRBN/H-PGDS in human KU812 cells assessed as reduction in H-PGDS levels incubated for 24 hrs by Western blotting analysis | ec50 | <0.0001 | uM |
| N-[4-[4-[4-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-5-yl]piperazine-1-carbonyl]piperidin-1-yl]phenyl]-4-(1-methylpyrrole-2-carbonyl)piperazine-1-carboxamide | 1858479: PROTAC activity at CRBN/H-PGDS in human KU812 cells assessed as reduction in H-PGDS levels incubated for 24 hrs by Western blotting analysis | ec50 | <0.0001 | uM |
| 2-[2-[2-[2-[2-[2-[6-[4-[3-[3-cyano-4-(2,4-dichloro-5-methoxyanilino)-6-methoxyquinolin-7-yl]oxypropyl]piperazin-1-yl]hexoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]-N-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]acetamide | 1678549: Protac binding affinity at CRBN/BCR-ABL (unknown origin) assessed as binding to phosphorylated c-ABL kinase domain by Kinomescan assay | kd | 0.0001 | uM |
| 2-[2-[6-[4-[3-[3-cyano-4-(2,4-dichloro-5-methoxyanilino)-6-methoxyquinolin-7-yl]oxypropyl]piperazin-1-yl]hexoxy]ethoxy]-N-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]acetamide | 1678549: Protac binding affinity at CRBN/BCR-ABL (unknown origin) assessed as binding to phosphorylated c-ABL kinase domain by Kinomescan assay | kd | 0.0001 | uM |
| 4-[4-[[4-[[2-(2,6-dioxopiperidin-3-yl)-1-oxo-3H-isoindol-4-yl]oxymethyl]phenyl]methyl]piperazin-1-yl]-3-fluorobenzonitrile | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0001 | uM |
| N-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-5-yl]-2-(trifluoromethoxy)benzenesulfonamide | 1814549: PROTAC activity at human CRBN/HiBiT-fused GSPT1 transfected in HEK293T cells assessed as induction of GSPT1 degradation measured after 4 hrs by Nano-Glo HiBiT lytic assay | ec50 | 0.0001 | uM |
| 3-[7-[[4-[[4-(3-fluorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0001 | uM |
| 3-[7-[[4-[4-(2,4-dichlorophenyl)piperazine-1-carbonyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0001 | uM |
| 3-[7-[[4-[[4-(4-chlorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0001 | uM |
| 3-[7-[[4-[4-(2,4-difluorophenyl)piperazine-1-carbonyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0001 | uM |
| 3-[7-[[4-[4-(4-chlorophenyl)piperazine-1-carbonyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0001 | uM |
| (3S)-3-[7-[[4-[[4-(2,4-difluorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0001 | uM |
| N-[4-[4-[4-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]piperazine-1-carbonyl]piperidin-1-yl]phenyl]-4-(1-methylpyrrole-2-carbonyl)piperazine-1-carboxamide | 1858479: PROTAC activity at CRBN/H-PGDS in human KU812 cells assessed as reduction in H-PGDS levels incubated for 24 hrs by Western blotting analysis | ec50 | 0.0001 | uM |
| N-(2-chloro-6-methylphenyl)-2-[[6-[4-[6-[2-[2-[2-[2-[2-[2-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]-2-oxoethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]hexyl]piperazin-1-yl]-2-methylpyrimidin-4-yl]amino]-1,3-thiazole-5-carboxamide | 1678549: Protac binding affinity at CRBN/BCR-ABL (unknown origin) assessed as binding to phosphorylated c-ABL kinase domain by Kinomescan assay | kd | 0.0002 | uM |
| N-[4-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]butyl]-4-[[4-(1-propylpyrazol-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]benzamide | 1710172: PROTAC activity at CRBN/JAK2 in human MHHCALL4 cells assessed as protein degradation by immunoblot analysis | ec50 | 0.0002 | uM |
| 3-[7-[[4-[[4-(2-fluorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0002 | uM |
| 3-[7-[[4-[[4-(2,4-dichlorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0002 | uM |
| (4S)-1-[4-[4-[3-[2-[2-[2-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]ethoxy]ethoxy]ethoxy]propanoyl]piperazin-1-yl]phenyl]-7,8-dimethoxy-N,4-dimethyl-4,5-dihydro-2,3-benzodiazepine-3-carboxamide | 1852448: Protac activity at His-tagged CRBN/FLAG-tagged DDB1 (unknown origin) in presence of Cy5-labeled thalidomide incubated for 60 min by TR-FRET assay | ic50 | 0.0002 | uM |
| N-(2-chloro-6-methylphenyl)-2-[[6-[4-[6-[2-[2-[6-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]-6-oxohexoxy]ethoxy]ethoxy]hexyl]piperazin-1-yl]-2-methylpyrimidin-4-yl]amino]-1,3-thiazole-5-carboxamide | 1678549: Protac binding affinity at CRBN/BCR-ABL (unknown origin) assessed as binding to phosphorylated c-ABL kinase domain by Kinomescan assay | kd | 0.0003 | uM |
| 4-[[4-[1-[3-(cyanomethyl)-1-ethylsulfonylazetidin-3-yl]pyrazol-4-yl]-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]-N-[2-[4-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-5-yl]piperazin-1-yl]ethyl]benzamide | 1827294: Binding affinity to CRBN (unknown origin) measured by Fluorescent Polarization assay | ic50 | 0.0003 | uM |
| 3-[7-[[4-[[4-(2,6-difluorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0003 | uM |
| 3-[7-[[4-[4-(4-fluorophenyl)piperazine-1-carbonyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0003 | uM |
| N-[2-[4-[[3-[3-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]cyclobutyl]oxypropyl-methylamino]methyl]cyclohexyl]-6-(2-hydroxypropan-2-yl)indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide | 2085323: Binding affinity to CRBN/IRAK4 in human OCI-Ly10 cells assessed as dissociation constant by DiscoverX Kd Elect assay | kd | 0.0003 | uM |
| (1R,9S,12S,15R,16E,18R,19S,21R,23S,24E,26E,28E,30S,32S,35R)-12-[(2S)-1-[(1S,3R,4R)-4-[2-[[1-[2-[2-[2-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]ethoxy]ethoxy]ethyl]triazol-4-yl]methoxy]ethoxy]-3-methoxycyclohexyl]propan-2-yl]-1,18-dihydroxy-19,30-dimethoxy-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.04,9]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone | 1849962: PROTAC activity at CRBN/FKBP12 in human Jurkat cells assessed as induction of FKBP12 degradation incubated for 12 hrs by Western blot analysis | ec50 | 0.0003 | uM |
| N-[2-[4-(hydroxymethyl)cyclohexyl]-6-(2-hydroxypropan-2-yl)indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide | 2085323: Binding affinity to CRBN/IRAK4 in human OCI-Ly10 cells assessed as dissociation constant by DiscoverX Kd Elect assay | kd | 0.0004 | uM |
| 3-[6-[9-[2-[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]ethyl]-3,9-diazaspiro[5.5]undecan-3-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assay | ic50 | 0.0004 | uM |
| 3-[6-[2-[[7-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]-7-azaspiro[3.5]nonan-2-yl]methyl]-2,7-diazaspiro[3.5]nonan-7-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assay | ic50 | 0.0004 | uM |
| 3-[6-[10-[[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]methyl]-7-oxa-3,10-diazaspiro[5.6]dodecan-3-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assay | ic50 | 0.0004 | uM |
| 3-[6-[4-[2-[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]ethyl]piperazin-1-yl]-4-methoxy-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assay | ic50 | 0.0004 | uM |
| 3-[6-[4-[[9-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]oxy-3-azaspiro[5.5]undecan-3-yl]methyl]piperidin-1-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assay | ic50 | 0.0004 | uM |
| 5-[4-[[4-[[2-(2,6-dioxopiperidin-3-yl)-1-oxo-3H-isoindol-4-yl]oxymethyl]phenyl]methyl]piperazin-1-yl]pyridine-2-carboxamide | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0004 | uM |
| 4-[[4-[1-[3-(cyanomethyl)-1-ethylsulfonylazetidin-3-yl]pyrazol-4-yl]-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]-N-[2-[4-[4-(2,6-dioxopiperidin-3-yl)phenyl]piperazin-1-yl]ethyl]benzamide | 1827294: Binding affinity to CRBN (unknown origin) measured by Fluorescent Polarization assay | ic50 | 0.0004 | uM |
| N-[2-[4-[[3-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]propyl-methylamino]methyl]cyclohexyl]-6-(2-hydroxypropan-2-yl)indazol-5-yl]-6-(trifluoromethyl)pyridine-2-carboxamide | 2085323: Binding affinity to CRBN/IRAK4 in human OCI-Ly10 cells assessed as dissociation constant by DiscoverX Kd Elect assay | kd | 0.0004 | uM |
| 3-[6-[10-[2-[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]ethyl]-7-oxa-3,10-diazaspiro[5.6]dodecan-3-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assay | ic50 | 0.0005 | uM |
| 3-[6-[4-[2-[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]ethyl]piperazin-1-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assay | ic50 | 0.0005 | uM |
| 3-[6-[4-[2-[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]oxyethyl]piperazin-1-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assay | ic50 | 0.0005 | uM |
| N-[3-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]propyl]-4-[[4-(1-propylpyrazol-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]benzamide | 1710172: PROTAC activity at CRBN/JAK2 in human MHHCALL4 cells assessed as protein degradation by immunoblot analysis | ec50 | 0.0005 | uM |
| 4-[[4-[1-[3-(cyanomethyl)-1-ethylsulfonylazetidin-3-yl]pyrazol-4-yl]-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]-N-[4-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]butyl]benzamide | 1710172: PROTAC activity at CRBN/JAK2 in human MHHCALL4 cells assessed as protein degradation by immunoblot analysis | ec50 | 0.0005 | uM |
| (3R)-3-[7-[[4-[[4-(2,4-difluorophenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0005 | uM |
| 3-[7-[[4-[[4-(4-methoxyphenyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0005 | uM |
| N-[5-[[2-(2,6-dioxopiperidin-3-yl)-1-oxo-3H-isoindol-4-yl]amino]pentyl]-4-[[4-(1-propylpyrazol-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-2-yl]amino]benzamide | 1710172: PROTAC activity at CRBN/JAK2 in human MHHCALL4 cells assessed as protein degradation by immunoblot analysis | ec50 | 0.0005 | uM |
| 6-[2-[2-[6-[4-[3-[3-cyano-4-(2,4-dichloro-5-methoxyanilino)-6-methoxyquinolin-7-yl]oxypropyl]piperazin-1-yl]hexoxy]ethoxy]ethoxy]-N-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]hexanamide | 1678549: Protac binding affinity at CRBN/BCR-ABL (unknown origin) assessed as binding to phosphorylated c-ABL kinase domain by Kinomescan assay | kd | 0.0006 | uM |
| 3-[6-[4-[[4-[[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]methyl]piperazin-1-yl]methyl]piperidin-1-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assay | ic50 | 0.0006 | uM |
| 3-[6-[4-[5-[3,5-difluoro-4-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]phenoxy]pentyl]piperazin-1-yl]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assay | ic50 | 0.0006 | uM |
| 3-[7-[[4-[[4-(2,4-dichlorophenyl)-2-oxopiperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0006 | uM |
| 4-[4-[[[2-[(9S)-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.02,6]trideca-2(6),4,7,10,12-pentaen-9-yl]acetyl]amino]methyl]piperidin-1-yl]-N-(2,6-dioxopiperidin-3-yl)-2-methoxybenzamide | 2021014: Protac activity at BRD4 in human MOLT-4 cells assessed as BRD4 protein degradation incubated for 24 hrs by immunoblotting analysis | ec50 | 0.0006 | uM |
| 3-[6-[4-[[1-[5-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]pyrimidin-2-yl]piperidin-4-yl]methyl]piperazin-1-yl]-4-methoxy-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1678557: Protac activity at CRBN/ERalpha in human MCF7 cells assessed as induction of ERalpha protein degradation incubated for 8 to 22 hrs by immunofluorescence assay | ic50 | 0.0007 | uM |
| 3-[7-[[4-[[4-(5-fluoro-2-pyridinyl)piperazin-1-yl]methyl]phenyl]methoxy]-3-oxo-1H-isoindol-2-yl]piperidine-2,6-dione | 1667517: Induction of CRBN-mediated pLOC-ePL-tagged aiolos (unknown origin) degradation in human DF15 cells assessed as minimum protein remaining incubated for 4 hrs by luminescence based beta-galactosidase enzyme fragmentation complementation assay | ec50 | 0.0007 | uM |
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| pomalidomide | increases response to substance, affects binding, affects cotreatment, increases expression, decreases reaction (+2 more) | 4 |
| Lenalidomide | increases response to substance, affects binding, decreases reaction, increases degradation, increases ubiquitination | 4 |
| Thalidomide | affects response to substance, affects binding, decreases reaction, increases degradation, increases ubiquitination | 3 |
| cobaltous chloride | increases expression | 2 |
| Air Pollutants | decreases expression, affects expression, increases abundance | 2 |
| Valproic Acid | decreases expression, increases expression | 2 |
| GSK-J4 | increases expression | 1 |
| afuresertib | affects cotreatment, increases expression | 1 |
| ginger extract | affects cotreatment, affects expression, increases abundance | 1 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, affects expression, increases abundance | 1 |
| mono-(2-ethylhexyl)phthalate | decreases expression | 1 |
| sodium arsenite | increases abundance, increases expression | 1 |
| tobacco tar | decreases expression | 1 |
| 4-aminophenylarsenoxide | affects binding, decreases reaction | 1 |
| cylindrospermopsin | increases expression | 1 |
| tri-isobutylphosphate | affects expression | 1 |
| K 7174 | increases expression | 1 |
| abrine | increases expression | 1 |
| 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine | increases expression, increases response to substance | 1 |
| jinfukang | decreases expression | 1 |
| 3-(2-hydroxy-4-(2-methylnonan-2-yl)phenyl)cyclohexan-1-ol | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | affects binding, decreases reaction | 1 |
| Arsenic | increases abundance, increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Formaldehyde | increases expression | 1 |
ChEMBL screening assays
5948 unique, capped per target: 5779 binding, 154 functional, 15 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3768094 | Binding | Binding affinity to human CRBN (delta 1 to 315) by FRET assay | A FRET-Based Assay for the Identification and Characterization of Cereblon Ligands. — J Med Chem |
| CHEMBL5346088 | Functional | In vivo protac activity at CRBN/IKZF1 in CB17-SCID mouse xenografted with human TMD8 cells assessed as degradation of IKZF1 protein in tumor at 10 to 90 mg/kg,po administration for 25 days by flow cytomtery | Discovery and Preclinical Pharmacology of NX-2127, an Orally Bioavailable Degrader of Bruton’s Tyrosine Kinase with Immunomodulatory Activity for the Treatment of Patients with B Cell Malignancies. — J Med Chem |
| CHEMBL4610576 | ADMET | Protac activity at cereblon/cullin4A/BRD3 in human MV4-11 cells assessed as induction of BRD3 degradation at 50 nM measured after 18 hrs by Western blot analysis | Discovery of novel small molecule induced selective degradation of the bromodomain and extra-terminal (BET) bromodomain protein BRD4 and BRD2 with cellular potencies. — Bioorg Med Chem |
Cellosaurus cell lines
12 cell lines: 11 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B8E0 | Abcam HCT 116 CRBN KO | Cancer cell line | Male |
| CVCL_B9G8 | Abcam A-549 CRBN KO | Cancer cell line | Male |
| CVCL_D2EK | Abcam MCF-7 CRBN KO | Cancer cell line | Female |
| CVCL_D7G8 | Ubigene HEK293T CRBN KO | Transformed cell line | Female |
| CVCL_D7MT | Ubigene A-549 CRBN KO | Cancer cell line | Male |
| CVCL_E0AT | Ubigene HeLa CRBN KO | Cancer cell line | Female |
| CVCL_E0TW | Ubigene Hep G2 CRBN KO | Cancer cell line | Male |
| CVCL_E8T6 | MCF7 CRBN KO clone 2A3 | Cancer cell line | Female |
| CVCL_F1UW | HyCyte U-937 KO-hCRBN | Cancer cell line | Male |
| CVCL_SJ69 | HAP1 CRBN (-) 1 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00104104 | PHASE4 | COMPLETED | A Multiple Myeloma Trial in Patients With Bone Metastases |
| NCT00211211 | PHASE4 | COMPLETED | FREE Study - Fracture Reduction Evaluation |
| NCT00242528 | PHASE4 | WITHDRAWN | Open-label Study, to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Bone Lesions Secondary to Multiple Myeloma. |
| NCT00257114 | PHASE4 | COMPLETED | Evaluation of VELCADE Given as Retreatment to Multiple Myeloma Patients for Efficacy, Safety and Tolerability |
| NCT00352703 | PHASE4 | COMPLETED | PROMPT - Palifermin in Reduction of Oral Mucositis in PBSC Transplantation |
| NCT00361140 | PHASE4 | COMPLETED | Busulfan Safety/Efficacy as Conditioning Prior to Hematopoietic Cell Transplantation (HCT) |
| NCT00622505 | PHASE4 | COMPLETED | Zoledronic Acid Treatment (Every 4 or 12 Weeks) to Prevent Skeletal Complications in Advanced Multiple Myeloma Participants |
| NCT00652041 | PHASE4 | COMPLETED | Bortezomib/Adriamycine/Melfalan/Prednisone (VAMP)/Thalidomide/Cyclophosphamide/Dexamethasone (TaCyDex) or Bortezomib/Melfalan/Prednisone (V-MP)/TaCyDex) in Refractary or Relapsed Multiple Myeloma |
| NCT00733538 | PHASE4 | COMPLETED | Stage I Multiple Myeloma Treatment |
| NCT01087008 | PHASE4 | COMPLETED | Zoledronic Acid in Patients With Multiple Myeloma and Asymptomatic Biochemical Relapse |
| NCT01249690 | PHASE4 | UNKNOWN | Efficacy Study of PAD and TAD in Newly Diagnosed Multiple Myeloma |
| NCT01410929 | PHASE4 | WITHDRAWN | Evaluation of Vertebral Compression Fracture Fixation With RF Kyphoplasty in Patients With Multiple Myeloma |
| NCT01731886 | PHASE4 | COMPLETED | Lenalidomide and Dexamethasone With/Without Stem Cell Transplant in Patients With Multiple Myeloma |
| NCT01868828 | PHASE4 | UNKNOWN | A Study of PAD Versus Velcade, Cyclophosphamide and Dexamethasone (VCD) Treatment in Subjects With Multiple Myeloma |
| NCT02268890 | PHASE4 | COMPLETED | A Pharmacokinetic Study of Bortezomib in Taiwanese Participants With Multiple Myeloma |
| NCT02286830 | PHASE4 | COMPLETED | Prolonged Protection From Bone Disease in Multiple Myeloma |
| NCT02559154 | PHASE4 | UNKNOWN | Modified Bortezomib-based Combination Therapy for Multiple Myeloma |
| NCT02577783 | PHASE4 | UNKNOWN | PDD vs PAD to Treat Initially Diagnosed MM |
| NCT02773550 | PHASE4 | TERMINATED | Treatment With a Scheme With Low Doses of Bortezomib / Melphalan / Prednisone (MPV) in Patients With Multiple Myeloma |
| NCT02958969 | PHASE4 | COMPLETED | Apixaban for Primary Prevention of Venous Thromboembolism in Patients With Multiple Myeloma |
| NCT03173092 | PHASE4 | TERMINATED | A Study of Ixazomib (NINLARO®) in Combination With Lenalidomide and Dexamethasone (IRD) for the Treatment of Participants With Multiple Myeloma (MM) |
| NCT03619252 | PHASE4 | COMPLETED | Pneumococcal Vaccination of Multiple Myeloma Patients on Novel Agents |
| NCT03768960 | PHASE4 | COMPLETED | A Study of DARZALEX (Daratumumab) In Indian Participants With Relapsed and Refractory Multiple Myeloma, Whose Prior Therapy Included a Proteasome Inhibitor and an Immunomodulatory Agent |
| NCT03829371 | PHASE4 | ACTIVE_NOT_RECRUITING | STUDY COMPARING TWO STANDARD TREATMENTS IN AUTOLOGOUS STEM CELL TRANSPLANTATION INELIGIBLE POPULATION AFFECTED BY MULTIPLE MYELOMA |
| NCT03908138 | PHASE4 | UNKNOWN | RDD Versus VDD in Newly Diagnosed Patients With Multiple Myeloma |
| NCT04217967 | PHASE4 | COMPLETED | Ixazomib, Lenalidomide, and Combination for Maintenance in NDMM Patients |
| NCT04952766 | PHASE4 | COMPLETED | Study Evaluating SARS-CoV-2 (COVID-19) Humoral Response After BNT162b2 Vaccine in Immunocompromised Adults Compared to Healthy Adults |
| NCT04989140 | PHASE4 | UNKNOWN | Study of Pomalidomide, Oral Dexamethasone and Ixazomib in Patients With Relapsed MM Who Have Received Lenalidomide |
| NCT05183139 | PHASE4 | WITHDRAWN | A Multicenter In-class Transition Study of Ixazomib Combined With Pomalidomide and Dexamethasone or With Lenalidomide and Dexamethasone in Adults With Relapsed/Refractory Multiple Myeloma |
| NCT05201781 | PHASE4 | RECRUITING | A Long-term Study for Participants Previously Treated With Ciltacabtagene Autoleucel |
| NCT05429515 | PHASE4 | NOT_YET_RECRUITING | Effect of HFR-SUPRA in the Treatment of Multiple Myeloma-related Acute Kidney Injury |
| NCT05511428 | PHASE4 | COMPLETED | Home Based Daratumumab Administration for Patients With Multiple Myeloma |
| NCT05545202 | PHASE4 | UNKNOWN | A Randomized, Comparative, Double-blind Trial of Pentaisomaltose and Dimethyl Sulphoxide for Cryoprotection of Hematopoietic Stem Cells in Subjects With Multiple Myeloma or Malignant Lymphoma With a Need for Autologous Transplantation |
| NCT05555329 | PHASE4 | COMPLETED | Alternative Dosing Scheme of Pomalidomide 4 mg Every Other Day Versus Pomalidomide 2 mg and 4 mg Every Day; the POMAlternative Study |
| NCT05722405 | PHASE4 | RECRUITING | Ixazomib Plus Low-dose Lenalidomide Versus Ixazomib Alone for Maintenance Treatment of High Risk Multiple Myeloma |
Related Atlas pages
- Associated diseases: intellectual disability, autosomal recessive 2, autosomal recessive non-syndromic intellectual disability, intellectual disability, plasma cell myeloma
- Targeted by drugs: Golcadomide, Iberdomide, Lenalidomide, Mezigdomide, Pomalidomide, Thalidomide
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive non-syndromic intellectual disability, intellectual disability, autosomal recessive 2, osteoarthritis, knee, plasma cell myeloma, restless legs syndrome