CRELD2
gene geneOn this page
Also known as MGC11256
Summary
CRELD2 (CRELD disulfide isomerase 2, HGNC:28150) is a protein-coding gene on chromosome 22q13.33, encoding Protein disulfide isomerase CRELD2 (Q6UXH1). Protein disulfide isomerase.
Predicted to enable calcium ion binding activity and protein disulfide isomerase activity. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and extracellular space.
Source: NCBI Gene 79174 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 129 total
- MANE Select transcript:
NM_024324
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28150 |
| Approved symbol | CRELD2 |
| Name | CRELD disulfide isomerase 2 |
| Location | 22q13.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC11256 |
| Ensembl gene | ENSG00000184164 |
| Ensembl biotype | protein_coding |
| OMIM | 607171 |
| Entrez | 79174 |
Gene structure
Transcript identifiers
Ensembl transcripts: 40 — 34 protein_coding, 3 protein_coding_CDS_not_defined, 3 retained_intron
ENST00000328268, ENST00000403427, ENST00000404488, ENST00000407217, ENST00000444954, ENST00000450207, ENST00000462253, ENST00000482956, ENST00000483652, ENST00000487969, ENST00000498354, ENST00000905816, ENST00000905817, ENST00000905818, ENST00000905819, ENST00000905820, ENST00000905821, ENST00000905822, ENST00000905823, ENST00000905824, ENST00000905825, ENST00000905826, ENST00000905827, ENST00000905828, ENST00000905829, ENST00000905830, ENST00000905831, ENST00000915447, ENST00000915448, ENST00000915449, ENST00000915450, ENST00000915451, ENST00000915452, ENST00000967730, ENST00000967731, ENST00000967732, ENST00000967733, ENST00000967734, ENST00000967735, ENST00000967736
RefSeq mRNA: 4 — MANE Select: NM_024324
NM_001135101, NM_001284317, NM_001284318, NM_024324
CCDS: CCDS14082, CCDS46730, CCDS63515, CCDS63516
Canonical transcript exons
ENST00000328268 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001323718 | 49925417 | 49925557 |
| ENSE00001897449 | 49918634 | 49918898 |
| ENSE00003466698 | 49919230 | 49919312 |
| ENSE00003474188 | 49919730 | 49919840 |
| ENSE00003478333 | 49924360 | 49924455 |
| ENSE00003543209 | 49921585 | 49921761 |
| ENSE00003557714 | 49927255 | 49927537 |
| ENSE00003607096 | 49923234 | 49923317 |
| ENSE00003641038 | 49920156 | 49920247 |
| ENSE00003787973 | 49922612 | 49922707 |
Expression profiles
Bgee: expression breadth ubiquitous, 282 present calls, max score 99.44.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 17.3191 / max 200.7850, expressed in 1808 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 192933 | 9.3992 | 1729 |
| 192932 | 6.8500 | 1709 |
| 192934 | 0.9968 | 495 |
| 192936 | 0.0696 | 24 |
| 192935 | 0.0034 | 3 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 99.44 | gold quality |
| oocyte | CL:0000023 | 98.20 | gold quality |
| trachea | UBERON:0003126 | 97.18 | gold quality |
| pituitary gland | UBERON:0000007 | 96.70 | gold quality |
| adenohypophysis | UBERON:0002196 | 96.61 | gold quality |
| tibia | UBERON:0000979 | 96.59 | gold quality |
| body of pancreas | UBERON:0001150 | 96.28 | gold quality |
| corpus epididymis | UBERON:0004359 | 96.03 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 95.86 | gold quality |
| pericardium | UBERON:0002407 | 95.77 | gold quality |
| pylorus | UBERON:0001166 | 95.64 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 95.52 | gold quality |
| type B pancreatic cell | CL:0000169 | 95.42 | silver quality |
| thyroid gland | UBERON:0002046 | 95.11 | gold quality |
| right testis | UBERON:0004534 | 94.92 | gold quality |
| right lobe of liver | UBERON:0001114 | 94.86 | gold quality |
| periodontal ligament | UBERON:0008266 | 94.85 | gold quality |
| cardia of stomach | UBERON:0001162 | 94.69 | gold quality |
| left testis | UBERON:0004533 | 94.57 | gold quality |
| parotid gland | UBERON:0001831 | 94.18 | gold quality |
| ileal mucosa | UBERON:0000331 | 94.01 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 93.99 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 93.91 | gold quality |
| stromal cell of endometrium | CL:0002255 | 93.73 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 93.66 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 93.42 | gold quality |
| pancreas | UBERON:0001264 | 93.38 | gold quality |
| body of stomach | UBERON:0001161 | 93.30 | gold quality |
| olfactory bulb | UBERON:0002264 | 93.24 | silver quality |
| epithelium of esophagus | UBERON:0001976 | 93.10 | gold quality |
Single-cell (SCXA)
Detected in 13 experiment(s), a significant marker in 11.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9154 | yes | 3073.88 |
| E-CURD-88 | yes | 99.14 |
| E-HCAD-4 | yes | 50.50 |
| E-CURD-122 | yes | 43.98 |
| E-HCAD-1 | yes | 42.84 |
| E-CURD-46 | yes | 40.94 |
| E-MTAB-8410 | yes | 40.27 |
| E-ANND-3 | yes | 28.56 |
| E-HCAD-11 | yes | 20.06 |
| E-HCAD-9 | yes | 17.25 |
| E-MTAB-10553 | yes | 10.58 |
| E-HCAD-38 | no | 428.39 |
| E-CURD-112 | no | 3.63 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXC1, SMAD1
miRNA regulators (miRDB)
25 targeting CRELD2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-381-3P | 99.93 | 71.87 | 2854 |
| HSA-MIR-300 | 99.92 | 71.76 | 2856 |
| HSA-MIR-8063 | 99.91 | 69.76 | 3146 |
| HSA-MIR-7845-5P | 99.88 | 64.88 | 771 |
| HSA-MIR-4698 | 99.84 | 71.41 | 4303 |
| HSA-MIR-6882-5P | 99.35 | 71.13 | 1206 |
| HSA-MIR-4427 | 99.34 | 70.33 | 1854 |
| HSA-MIR-4680-3P | 98.64 | 68.60 | 2093 |
| HSA-MIR-1301-3P | 98.64 | 68.27 | 1071 |
| HSA-MIR-5047 | 98.64 | 68.62 | 1035 |
| HSA-MIR-1237-3P | 98.55 | 67.65 | 1423 |
| HSA-MIR-660-3P | 98.14 | 66.04 | 1434 |
| HSA-MIR-4660 | 97.79 | 67.44 | 1328 |
| HSA-MIR-4475 | 97.36 | 66.95 | 761 |
| HSA-MIR-5187-3P | 97.28 | 67.10 | 1037 |
| HSA-MIR-6892-5P | 97.27 | 68.60 | 847 |
| HSA-MIR-3918 | 96.13 | 64.65 | 1300 |
Literature-anchored findings (GeneRIF, showing 9)
- CRELD2 can act as a specific regulator of alpha4beta2 nAChR expression (PMID:16238698)
- Mapping of CRELD2 by FISH shows that it maps to 22q13 rather than the GenBank reported locus of 22p13. (PMID:16919896)
- We demonstrate that Armet and Creld2 are genotype-specific ER stress response proteins with substrate specificities, and that aggregation of mutant matrilin-3 is a key disease trigger in MED that could be exploited as a potential therapeutic target (PMID:23956175)
- results strongly suggest that Creld2 may be directly regulated by BMP9 and ER stress response may play an important role in regulating osteogenic differentiation (PMID:24019898)
- intravesicular acidification by V-ATPase regulates the secretion of CRELD2 without relying on the balance of intracellular calcium ions and the expression of endoplasmic reticulum chaperones such as GRP78 and protein disulfide isomerase. (PMID:24687431)
- ROCK-mediated selective activation of PERK signalling causes fibroblast reprogramming and tumour progression through a CRELD2-dependent mechanism. (PMID:32451439)
- Creld2 function during unfolded protein response is essential for liver metabolism homeostasis. (PMID:34549824)
- CRELD2, endoplasmic reticulum stress, and human diseases. (PMID:36936176)
- Molecular characterization of the ER stress-inducible factor CRELD2. (PMID:38753249)
Cross-species orthologs
11 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | creld2 | ENSDARG00000029071 |
| mus_musculus | Creld2 | ENSMUSG00000023272 |
| rattus_norvegicus | Creld2 | ENSRNOG00000004659 |
| caenorhabditis_elegans | WBGENE00000168 | |
| caenorhabditis_elegans | WBGENE00012018 | |
| caenorhabditis_elegans | WBGENE00013480 | |
| caenorhabditis_elegans | WBGENE00013486 | |
| caenorhabditis_elegans | WBGENE00013487 | |
| caenorhabditis_elegans | WBGENE00018906 | |
| caenorhabditis_elegans | WBGENE00019901 | |
| caenorhabditis_elegans | WBGENE00022858 |
Paralogs (8): DLL3 (ENSG00000090932), CD93 (ENSG00000125810), FBLN7 (ENSG00000144152), WIF1 (ENSG00000156076), CRELD1 (ENSG00000163703), DLK2 (ENSG00000171462), CD248 (ENSG00000174807), CLEC14A (ENSG00000176435)
Protein
Protein identifiers
Protein disulfide isomerase CRELD2 — Q6UXH1 (reviewed: Q6UXH1)
Alternative names: Cysteine-rich with EGF-like domain protein 2
All UniProt accessions (2): A6PWM2, Q6UXH1
UniProt curated annotations — full annotation on UniProt →
Function. Protein disulfide isomerase. Might play a role in the unfolded protein response. May regulate transport of alpha4-beta2 neuronal acetylcholine receptor.
Subunit / interactions. Interacts with CHRNA4. Component of a complex containing at least CRELD2, MANF, MATN3 and PDIA4.
Subcellular location. Endoplasmic reticulum.
Tissue specificity. Ubiquitously expressed. Highly expressed in skeletal muscle, heart, liver, kidney and placenta.
Miscellaneous. Minor isoform.
Similarity. Belongs to the CRELD family.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6UXH1-1 | 1, Delta | yes |
| Q6UXH1-2 | 2, Alpha | |
| Q6UXH1-3 | 3, Beta | |
| Q6UXH1-4 | 4, Gamma | |
| Q6UXH1-5 | 5, Epsilon | |
| Q6UXH1-6 | 6, Zeta |
RefSeq proteins (4): NP_001128573, NP_001271246, NP_001271247, NP_077300* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000152 | EGF-type_Asp/Asn_hydroxyl_site | PTM |
| IPR000742 | EGF | Domain |
| IPR001881 | EGF-like_Ca-bd_dom | Domain |
| IPR002049 | LE_dom | Domain |
| IPR006212 | Furin_repeat | Repeat |
| IPR009030 | Growth_fac_rcpt_cys_sf | Homologous_superfamily |
| IPR018097 | EGF_Ca-bd_CS | Conserved_site |
| IPR049883 | NOTCH1_EGF-like | Domain |
Pfam: PF07645
UniProt features (28 total): disulfide bond 8, splice variant 6, sequence variant 3, domain 2, repeat 2, short sequence motif 2, signal peptide 1, chain 1, glycosylation site 1, region of interest 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6UXH1-F1 | 87.63 | 0.73 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (8): 31–34, 140–154, 148–166, 168–177, 263–266, 294–308, 301–317, 319–330
Glycosylation sites (1): 251
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 163 (showing top):
GSE45365_NK_CELL_VS_CD8_TCELL_UP, GSE45365_NK_CELL_VS_CD8A_DC_UP, GSE45365_NK_CELL_VS_BCELL_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, YY1_Q6, NIKOLSKY_BREAST_CANCER_22Q13_AMPLICON, BILD_E2F3_ONCOGENIC_SIGNATURE, NADLER_HYPERGLYCEMIA_AT_OBESITY, MORI_PLASMA_CELL_UP, IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR, NICK_RESPONSE_TO_PROC_TREATMENT_UP, chr22q13, WANG_TUMOR_INVASIVENESS_UP, GOMF_INTRAMOLECULAR_OXIDOREDUCTASE_ACTIVITY, GOMF_ISOMERASE_ACTIVITY
GO Biological Process (0):
GO Molecular Function (4): protein disulfide isomerase activity (GO:0003756), calcium ion binding (GO:0005509), protein binding (GO:0005515), isomerase activity (GO:0016853)
GO Cellular Component (3): obsolete extracellular space (GO:0005615), endoplasmic reticulum (GO:0005783), Golgi apparatus (GO:0005794)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cytoplasm | 2 |
| endomembrane system | 2 |
| intracellular membrane-bounded organelle | 2 |
| intramolecular oxidoreductase activity, transposing S-S bonds | 1 |
| catalytic activity, acting on a protein | 1 |
| metal ion binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
Protein interactions and networks
STRING
834 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CRELD2 | MANF | P55145 | 644 |
| CRELD2 | SDF2L1 | Q9HCN8 | 619 |
| CRELD2 | CHRNA4 | P43681 | 616 |
| CRELD2 | MATN3 | O15232 | 564 |
| CRELD2 | DERL3 | Q96Q80 | 530 |
| CRELD2 | HERPUD1 | Q15011 | 528 |
| CRELD2 | PDIA4 | P13667 | 478 |
| CRELD2 | PDIA6 | Q15084 | 477 |
| CRELD2 | ALG12 | Q9BV10 | 471 |
| CRELD2 | THBS1 | P07996 | 459 |
| CRELD2 | ATF6 | P18850 | 434 |
| CRELD2 | HSPA5 | P11021 | 430 |
| CRELD2 | HYOU1 | Q9Y4L1 | 426 |
| CRELD2 | XBP1 | P17861 | 408 |
| CRELD2 | HSP90B1 | P14625 | 408 |
IntAct
84 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CHCHD4 | SSNA1 | psi-mi:“MI:0914”(association) | 0.640 |
| MATN3 | PDIA4 | psi-mi:“MI:0914”(association) | 0.560 |
| ZFP41 | LRP4 | psi-mi:“MI:0914”(association) | 0.530 |
| WNT7A | LDLR | psi-mi:“MI:0914”(association) | 0.530 |
| GALNS | FBXO21 | psi-mi:“MI:0914”(association) | 0.530 |
| CDKN2A | CRELD2 | psi-mi:“MI:0915”(physical association) | 0.510 |
| HSP90B1 | CRELD2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CRELD2 | LTB4R2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRELD2 | HOXA1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| C8orf33 | CRELD2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRELD2 | CDK5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CDKN1A | CRELD2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRELD2 | CSNK2B | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRELD2 | CTSL | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRELD2 | DNAJB11 | psi-mi:“MI:0915”(physical association) | 0.370 |
| FZD4 | CRELD2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| GADD45A | CRELD2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRELD2 | GSK3B | psi-mi:“MI:0915”(physical association) | 0.370 |
| IGF2 | CRELD2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MAPK6 | CRELD2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRELD2 | MEST | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRELD2 | NDUFB11 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRELD2 | NR1H2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PIN1 | CRELD2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRELD2 | PLA2G2A | psi-mi:“MI:0915”(physical association) | 0.370 |
| PLK1 | CRELD2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RAC1 | CRELD2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRELD2 | RCC1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CRELD2 | REG1B | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (77): CRELD2 (Affinity Capture-MS), CRELD2 (Affinity Capture-MS), CRELD2 (Affinity Capture-MS), CRELD2 (Affinity Capture-MS), CRELD2 (Affinity Capture-MS), CRELD2 (Affinity Capture-MS), CRELD2 (Affinity Capture-MS), CRELD2 (Affinity Capture-MS), CRELD2 (Affinity Capture-MS), CRELD2 (Affinity Capture-MS), CRELD2 (Proximity Label-MS), CRELD2 (Proximity Label-MS), CRELD2 (Two-hybrid), CRELD2 (Two-hybrid), CRELD2 (Affinity Capture-MS)
ESM2 similar proteins: A0A6I8RMG7, A2A863, A2VCU8, A7E2Z9, P01130, P01131, P04412, P0CY46, P16144, P18563, P18564, P24043, P35555, P35950, P35952, P35953, P98133, P98155, P98156, P98165, P98166, Q1RPR6, Q28832, Q2KIT5, Q3UZV7, Q4G063, Q4V7M2, Q5XH36, Q60438, Q61220, Q61554, Q62918, Q64632, Q6AYF4, Q6DDW2, Q6UXH1, Q7SXF6, Q7ZXL5, Q863C4, Q8CFM6
Diamond homologs: A0A6I8RMG7, A2AJ76, B3EWY9, B5DFC9, O35568, O77469, O88322, P10493, P14543, P41413, P48960, P98095, Q04592, Q09165, Q14112, Q19267, Q2KIT5, Q2Q421, Q2Q426, Q4G063, Q4V7F2, Q4V7M2, Q5EA46, Q5RBP1, Q5XH36, Q60438, Q6UXH1, Q6UXI9, Q7SXF6, Q7ZXL5, Q86XX4, Q8BPB5, Q8K4G1, Q8R4U0, Q8R4Y4, Q91XD7, Q96HD1, Q96RW7, Q9CYA0, Q9JJS0
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 112 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Neutrophil degranulation | 14 | 4.0× | 5e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
129 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 89 |
| Likely benign | 5 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2120 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 22:49918882:TGGAC:T | donor_gain | 1.0000 |
| 22:49919836:CAGCT:C | donor_gain | 1.0000 |
| 22:49919838:GCT:G | donor_gain | 1.0000 |
| 22:49919839:CT:C | donor_gain | 1.0000 |
| 22:49919841:G:GG | donor_gain | 1.0000 |
| 22:49921583:A:AG | acceptor_gain | 1.0000 |
| 22:49921584:G:GG | acceptor_gain | 1.0000 |
| 22:49923280:GTTCT:G | donor_gain | 1.0000 |
| 22:49925410:A:AG | acceptor_gain | 1.0000 |
| 22:49925413:TTAG:T | acceptor_loss | 1.0000 |
| 22:49925414:TAGA:T | acceptor_loss | 1.0000 |
| 22:49925415:A:AG | acceptor_gain | 1.0000 |
| 22:49925415:AGAT:A | acceptor_gain | 1.0000 |
| 22:49925415:AGATG:A | acceptor_loss | 1.0000 |
| 22:49925416:G:GT | acceptor_gain | 1.0000 |
| 22:49925416:GA:G | acceptor_gain | 1.0000 |
| 22:49925416:GAT:G | acceptor_gain | 1.0000 |
| 22:49925416:GATG:G | acceptor_gain | 1.0000 |
| 22:49925416:GATGT:G | acceptor_gain | 1.0000 |
| 22:49925553:GGCTG:G | donor_gain | 1.0000 |
| 22:49925554:GCTG:G | donor_gain | 1.0000 |
| 22:49925554:GCTGG:G | donor_gain | 1.0000 |
| 22:49925555:CTGGT:C | donor_loss | 1.0000 |
| 22:49925556:TGGT:T | donor_loss | 1.0000 |
| 22:49925557:GGTGA:G | donor_loss | 1.0000 |
| 22:49925558:G:C | donor_loss | 1.0000 |
| 22:49925558:G:GG | donor_gain | 1.0000 |
| 22:49925559:TGAGT:T | donor_loss | 1.0000 |
| 22:49925560:GAGTG:G | donor_loss | 1.0000 |
| 22:49918260:GA:G | donor_loss | 0.9900 |
AlphaMissense
2318 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 22:49919280:G:C | W60C | 0.998 |
| 22:49919280:G:T | W60C | 0.998 |
| 22:49919303:A:G | Y68C | 0.996 |
| 22:49925428:T:A | C294S | 0.995 |
| 22:49925429:G:C | C294S | 0.995 |
| 22:49922682:G:C | W221C | 0.994 |
| 22:49922682:G:T | W221C | 0.994 |
| 22:49925470:T:A | C308S | 0.994 |
| 22:49925471:G:C | C308S | 0.994 |
| 22:49919283:G:C | E61D | 0.992 |
| 22:49919283:G:T | E61D | 0.992 |
| 22:49920191:G:A | C120Y | 0.992 |
| 22:49923284:T:A | C247S | 0.992 |
| 22:49923285:G:C | C247S | 0.992 |
| 22:49924407:T:A | C274S | 0.992 |
| 22:49924408:G:C | C274S | 0.992 |
| 22:49924449:T:A | C288S | 0.992 |
| 22:49924450:G:C | C288S | 0.992 |
| 22:49919257:T:C | F53L | 0.991 |
| 22:49919259:T:A | F53L | 0.991 |
| 22:49919259:T:G | F53L | 0.991 |
| 22:49919829:G:C | W104C | 0.991 |
| 22:49919829:G:T | W104C | 0.991 |
| 22:49923245:T:A | C234S | 0.991 |
| 22:49923246:G:C | C234S | 0.991 |
| 22:49924383:T:A | C266S | 0.991 |
| 22:49924384:G:C | C266S | 0.991 |
| 22:49925478:T:A | N310K | 0.991 |
| 22:49925478:T:G | N310K | 0.991 |
| 22:49919312:G:T | S71I | 0.990 |
dbSNP variants (sampled 300 via entrez): RS1000124441 (22:49927004 C>A,T), RS1000177265 (22:49927139 G>A,C), RS1000214560 (22:49927560 T>C), RS1000398676 (22:49923434 C>T), RS1000460944 (22:49927784 C>T), RS1000514577 (22:49927966 G>A,C), RS1000939120 (22:49918856 G>A,T), RS1001058264 (22:49923679 C>T), RS1001340837 (22:49924599 G>A), RS1001651023 (22:49927067 G>A), RS1001765080 (22:49922750 C>A,G,T), RS1001979530 (22:49927917 C>T), RS1002205147 (22:49923923 C>A,G), RS1002214600 (22:49917981 G>A), RS1002750217 (22:49921962 G>A,C)
Disease associations
OMIM: gene MIM:607171 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): breast ductal adenocarcinoma (MONDO:0005590)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002481_12 | Acne (severe) | 4.000000e-06 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018270 | Carcinoma, Ductal, Breast | C04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
51 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cyclosporine | increases expression | 6 |
| Tunicamycin | increases expression | 5 |
| sodium arsenite | decreases expression, increases expression | 3 |
| Valproic Acid | increases methylation, increases expression | 3 |
| methacrylaldehyde | affects cotreatment, increases expression, increases abundance | 2 |
| Acrolein | affects cotreatment, increases expression, increases abundance | 2 |
| Air Pollutants | affects cotreatment, increases abundance, increases expression, decreases expression | 2 |
| Ozone | affects cotreatment, increases expression, increases abundance | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Cadmium Chloride | increases abundance, increases expression | 2 |
| Thapsigargin | increases expression | 2 |
| FR900359 | increases phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| TAK-243 | increases sumoylation | 1 |
| methyleugenol | decreases expression | 1 |
| alpha-pinene | increases abundance, affects cotreatment, increases expression | 1 |
| bisphenol A | increases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| sodium bichromate | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| K 7174 | decreases expression | 1 |
| pinostrobin | decreases expression | 1 |
| fenpyroximate | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | decreases expression | 1 |
Clinical trials (associated diseases)
11 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03414970 | PHASE3 | ACTIVE_NOT_RECRUITING | Hypofractionated Radiation Therapy After Mastectomy in Preventing Recurrence in Patients With Stage IIa-IIIa Breast Cancer |
| NCT00461344 | PHASE2 | TERMINATED | Docetaxel + Doxorubicin as Neoadjuvant Chemotherapy in Patients With Breast Cancer |
| NCT07499999 | PHASE2 | NOT_YET_RECRUITING | Randomized Double-Blind Phase II Trial of Baby Exemestane Versus Baby Tamoxifen in Post-Menopausal Women at High Risk for Breast Cancer |
| NCT00637364 | PHASE1/PHASE2 | SUSPENDED | High Intensity Focused Ultrasound Tumor Treatment for Pancreatic Cancer Pain |
| NCT02779855 | PHASE1/PHASE2 | COMPLETED | Talimogene Laherparepvec in Combination With Neoadjuvant Chemotherapy in Triple Negative Breast Cancer |
| NCT01753908 | EARLY_PHASE1 | COMPLETED | Broccoli Sprout Extract in Treating Patients With Breast Cancer |
| NCT01796041 | EARLY_PHASE1 | COMPLETED | Intraoperative Imaging of Breast Cancer With Indocyanine Green |
| NCT01208974 | Not specified | ACTIVE_NOT_RECRUITING | Nipple-Areola Complex (NAC) Irradiation After Nipple-Sparing Mastectomy and Reconstruction |
| NCT01875198 | Not specified | TERMINATED | Oncologic Impact of Splenectomy-omitting Radical Pancreatectomy in Well-selected Left-sided Pancreatic Cancer |
| NCT03543397 | Not specified | UNKNOWN | MRI in Ductal Carcinoma in Situ (DCIS) |
| NCT03834532 | Not specified | COMPLETED | Living Well After Breast Surgery |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.