CRLF3
gene geneOn this page
Also known as CREME9CYTOR4
Summary
CRLF3 (cytokine receptor like factor 3, HGNC:17177) is a protein-coding gene on chromosome 17q11.2, encoding Cytokine receptor-like factor 3 (Q8IUI8). May play a role in the negative regulation of cell cycle progression.
This gene encodes a cytokine receptor-like factor that may negatively regulate cell cycle progression at the G0/G1 phase. Studies of the related rat protein suggest that it may regulate neuronal morphology and synaptic vesicle biogenesis. This gene is one of several genes located in the neurofibromatosis type I tumor suppressor region on the q arm of chromosome 17, a region that is subject to microdeletions, duplications, chromosomal breaks and rearrangements. Alternative splicing of this gene results in multiple transcript variants. Related pseudogenes have been identified on chromosomes 2 and 5.
Source: NCBI Gene 51379 — RefSeq curated summary.
At a glance
- GWAS associations: 12
- Clinical variants (ClinVar): 53 total — 2 pathogenic
- MANE Select transcript:
NM_015986
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17177 |
| Approved symbol | CRLF3 |
| Name | cytokine receptor like factor 3 |
| Location | 17q11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CREME9, CYTOR4 |
| Ensembl gene | ENSG00000176390 |
| Ensembl biotype | protein_coding |
| OMIM | 614853 |
| Entrez | 51379 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 5 protein_coding, 3 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000324238, ENST00000577725, ENST00000578692, ENST00000583527, ENST00000583805, ENST00000585268, ENST00000885411, ENST00000885412, ENST00000921129
RefSeq mRNA: 1 — MANE Select: NM_015986
NM_015986
CCDS: CCDS32607
Canonical transcript exons
ENST00000324238 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001285559 | 30803901 | 30804108 |
| ENSE00001309362 | 30824523 | 30824692 |
| ENSE00001326083 | 30782684 | 30784443 |
| ENSE00003458420 | 30797311 | 30797398 |
| ENSE00003531503 | 30785919 | 30786031 |
| ENSE00003554180 | 30792440 | 30792572 |
| ENSE00003563630 | 30793450 | 30793672 |
| ENSE00003614773 | 30796160 | 30796337 |
Expression profiles
Bgee: expression breadth ubiquitous, 287 present calls, max score 95.67.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 15.3161 / max 535.4932, expressed in 1787 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 165196 | 15.2146 | 1787 |
| 165197 | 0.1015 | 38 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| trabecular bone tissue | UBERON:0002483 | 95.67 | gold quality |
| mononuclear cell | CL:0000842 | 95.07 | gold quality |
| leukocyte | CL:0000738 | 95.04 | gold quality |
| monocyte | CL:0000576 | 94.99 | gold quality |
| bone marrow | UBERON:0002371 | 93.95 | gold quality |
| blood | UBERON:0000178 | 93.78 | gold quality |
| lymph node | UBERON:0000029 | 92.81 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 92.50 | gold quality |
| thymus | UBERON:0002370 | 92.34 | gold quality |
| bone marrow cell | CL:0002092 | 91.88 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 91.12 | gold quality |
| vermiform appendix | UBERON:0001154 | 91.06 | gold quality |
| granulocyte | CL:0000094 | 90.94 | gold quality |
| gingiva | UBERON:0001828 | 90.67 | gold quality |
| oral cavity | UBERON:0000167 | 90.56 | gold quality |
| gingival epithelium | UBERON:0001949 | 90.56 | gold quality |
| superficial temporal artery | UBERON:0001614 | 90.45 | gold quality |
| periodontal ligament | UBERON:0008266 | 90.19 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 90.16 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 89.98 | gold quality |
| colonic mucosa | UBERON:0000317 | 89.69 | gold quality |
| caecum | UBERON:0001153 | 89.63 | gold quality |
| tonsil | UBERON:0002372 | 89.63 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 88.99 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 88.89 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 88.87 | gold quality |
| spleen | UBERON:0002106 | 88.58 | gold quality |
| placenta | UBERON:0001987 | 88.54 | gold quality |
| upper leg skin | UBERON:0004262 | 88.45 | gold quality |
| cerebellar vermis | UBERON:0004720 | 88.31 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.32 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
98 targeting CRLF3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
| HSA-MIR-200A-3P | 99.94 | 72.68 | 2420 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-219A-5P | 99.91 | 73.36 | 735 |
| HSA-MIR-329-3P | 99.91 | 66.56 | 1234 |
| HSA-MIR-362-3P | 99.91 | 66.38 | 1267 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-4782-3P | 99.88 | 73.31 | 735 |
| HSA-MIR-6766-3P | 99.88 | 73.38 | 732 |
| HSA-MIR-3941 | 99.86 | 70.54 | 2735 |
| HSA-MIR-202-5P | 99.78 | 67.65 | 991 |
Literature-anchored findings (GeneRIF, showing 4)
- p48.2 may represent a novel type of intracellular protein functioning as a negative regulator at the G0/G1 phase. (PMID:19427400)
- Suggests that the homologous rat protein is involved in neuronal morphology regulation. (PMID:228748)
- Patient-derived iPSC-cerebral organoid modeling of the 17q11.2 microdeletion syndrome establishes CRLF3 as a critical regulator of neurogenesis. (PMID:34233200)
- A common single nucleotide variant in the cytokine receptor-like factor-3 (CRLF3) gene causes neuronal deficits in human and mouse cells. (PMID:37712888)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | crlf3 | ENSDARG00000070261 |
| mus_musculus | Crlf3 | ENSMUSG00000017561 |
| rattus_norvegicus | Crlf3 | ENSRNOG00000050657 |
| drosophila_melanogaster | elg1 | FBGN0036574 |
Paralogs (1): ATAD5 (ENSG00000176208)
Protein
Protein identifiers
Cytokine receptor-like factor 3 — Q8IUI8 (reviewed: Q8IUI8)
Alternative names: Cytokine receptor-like molecule 9, Cytokine receptor-related protein 4, Type I cytokine receptor-like factor p48
All UniProt accessions (3): Q8IUI8, J3KST8, J3QLS9
UniProt curated annotations — full annotation on UniProt →
Function. May play a role in the negative regulation of cell cycle progression.
Subcellular location. Cytoplasm.
Tissue specificity. Expressed in several embryonic and adult tissues, including adult and fetal brain, liver, spleen and pancreas. Expressed in adult, but not fetal kidney. Expressed in skin and squamous cell carcinoma (SCC) and in several other cancer types. Also detected in lesion actinic keratosis (AK).
Similarity. Belongs to the cytokine receptor-like factor 3 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8IUI8-1 | 1, p48.6 | yes |
| Q8IUI8-2 | 2, p48.2 |
RefSeq proteins (1): NP_057070* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003961 | FN3_dom | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR036116 | FN3_sf | Homologous_superfamily |
UniProt features (10 total): sequence conflict 3, sequence variant 2, chain 1, domain 1, coiled-coil region 1, splice variant 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8IUI8-F1 | 90.15 | 0.72 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 1
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 255 (showing top):
GSE45365_NK_CELL_VS_BCELL_UP, MODULE_169, GOBP_NEGATIVE_REGULATION_OF_CELL_GROWTH, GOBP_CELL_CYCLE_PHASE_TRANSITION, GOBP_GROWTH, MODULE_493, BROWNE_HCMV_INFECTION_16HR_UP, GOBP_CELL_SURFACE_RECEPTOR_SIGNALING_PATHWAY_VIA_JAK_STAT, chr17q11, GOBP_NEGATIVE_REGULATION_OF_CELL_CYCLE_PROCESS, GOBP_NEGATIVE_REGULATION_OF_CELL_CYCLE, GOBP_REGULATION_OF_CELL_CYCLE, WTGAAAT_UNKNOWN, GOBP_REGULATION_OF_CELL_CYCLE_G1_S_PHASE_TRANSITION, GOBP_CELL_CYCLE_G1_S_PHASE_TRANSITION
GO Biological Process (5): negative regulation of cell growth (GO:0030308), positive regulation of DNA-templated transcription (GO:0045893), positive regulation of transcription by RNA polymerase II (GO:0045944), positive regulation of receptor signaling pathway via JAK-STAT (GO:0046427), negative regulation of G1/S transition of mitotic cell cycle (GO:2000134)
GO Molecular Function (3): DNA binding (GO:0003677), identical protein binding (GO:0042802), protein binding (GO:0005515)
GO Cellular Component (5): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), plasma membrane (GO:0005886), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| regulation of cell growth | 1 |
| cell growth | 1 |
| negative regulation of growth | 1 |
| negative regulation of cellular process | 1 |
| DNA-templated transcription | 1 |
| regulation of DNA-templated transcription | 1 |
| positive regulation of RNA biosynthetic process | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription | 1 |
| cell surface receptor signaling pathway via JAK-STAT | 1 |
| regulation of receptor signaling pathway via JAK-STAT | 1 |
| positive regulation of receptor signaling pathway via STAT | 1 |
| G1/S transition of mitotic cell cycle | 1 |
| negative regulation of mitotic cell cycle phase transition | 1 |
| negative regulation of cell cycle G1/S phase transition | 1 |
| regulation of G1/S transition of mitotic cell cycle | 1 |
| nucleic acid binding | 1 |
| protein binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| membrane | 1 |
| cell periphery | 1 |
Protein interactions and networks
STRING
576 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CRLF3 | UTP6 | Q9NYH9 | 793 |
| CRLF3 | LRRC37B | Q96QE4 | 723 |
| CRLF3 | ADAP2 | Q9NPF8 | 707 |
| CRLF3 | TEFM | Q96QE5 | 702 |
| CRLF3 | COPRS | Q9NQ92 | 693 |
| CRLF3 | ATAD5 | Q96QE3 | 625 |
| CRLF3 | RAB11FIP4 | Q86YS3 | 614 |
| CRLF3 | EVI2A | P22794 | 611 |
| CRLF3 | EVI2B | P34910 | 599 |
| CRLF3 | RNF135 | Q8IUD6 | 577 |
| CRLF3 | EPOR | P19235 | 543 |
| CRLF3 | GATD3 | P0DPI2 | 526 |
| CRLF3 | EPO | P01588 | 513 |
| CRLF3 | OMG | P23515 | 507 |
| CRLF3 | ZNF207 | O43670 | 497 |
IntAct
148 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MOB1B | LATS1 | psi-mi:“MI:0914”(association) | 0.840 |
| VPS25 | CRLF3 | psi-mi:“MI:0915”(physical association) | 0.780 |
| CRLF3 | VPS25 | psi-mi:“MI:0915”(physical association) | 0.780 |
| DOCK8 | LRCH2 | psi-mi:“MI:0914”(association) | 0.740 |
| LGALS14 | CRLF3 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CRLF3 | LGALS14 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CRLF3 | CRLF3 | psi-mi:“MI:0915”(physical association) | 0.670 |
| MOB1A | LATS1 | psi-mi:“MI:0914”(association) | 0.670 |
| ENPP6 | SCAMP1 | psi-mi:“MI:0914”(association) | 0.640 |
| RBM14 | CRLF3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CRLF3 | RBM14 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CRLF3 | DDIT4L | psi-mi:“MI:0915”(physical association) | 0.560 |
| KCTD21 | CRLF3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZFP1 | CRLF3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CRLF3 | L3MBTL3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CRLF3 | MYOZ3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CRLF3 | DMWD | psi-mi:“MI:0915”(physical association) | 0.560 |
| CRLF3 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (52): CRLF3 (Two-hybrid), LGALS14 (Two-hybrid), VPS25 (Two-hybrid), CRLF3 (Affinity Capture-MS), CRLF3 (Two-hybrid), CRLF3 (Affinity Capture-MS), CRLF3 (Affinity Capture-MS), CRLF3 (Affinity Capture-MS), CRLF3 (Affinity Capture-RNA), CRLF3 (Two-hybrid), CRLF3 (Two-hybrid), CRLF3 (Two-hybrid), CRLF3 (Two-hybrid), CRLF3 (Two-hybrid), CRLF3 (Two-hybrid)
ESM2 similar proteins: A6QNX3, B2GV77, P09851, P20936, P50904, P61970, P61971, P61972, Q1JP79, Q29425, Q2KI42, Q2KIW0, Q2TBL9, Q32KP9, Q3UNA4, Q4R4K5, Q4R5H6, Q5E9J4, Q5F415, Q5FVJ7, Q5R8G4, Q5R8I6, Q5RB36, Q5RES2, Q5RKN4, Q5ZLH0, Q6PC62, Q8BG32, Q8BUH1, Q8IUI8, Q8K0F1, Q8MJJ1, Q92747, Q93034, Q99PD4, Q9CQC8, Q9CZQ9, Q9D5V5, Q9DAI2, Q9ES56
Diamond homologs: Q568M3, Q7ZX59, Q8IUI8, Q9Z2L7
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
53 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 44 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3237178 | GRCh37/hg19 17q11.2(chr17:29000019-30416429) | Pathogenic |
| 4526736 | NC_000017.11:g.30765058_31971581del | Pathogenic |
SpliceAI
1400 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:30785913:TCTTA:T | donor_loss | 1.0000 |
| 17:30785914:CTTA:C | donor_loss | 1.0000 |
| 17:30785915:TTA:T | donor_loss | 1.0000 |
| 17:30785916:TACC:T | donor_loss | 1.0000 |
| 17:30785917:A:AC | donor_gain | 1.0000 |
| 17:30785917:AC:A | donor_gain | 1.0000 |
| 17:30785917:ACC:A | donor_loss | 1.0000 |
| 17:30785918:C:CC | donor_gain | 1.0000 |
| 17:30785918:C:CG | donor_loss | 1.0000 |
| 17:30785918:CC:C | donor_gain | 1.0000 |
| 17:30785918:CCA:C | donor_gain | 1.0000 |
| 17:30785918:CCAT:C | donor_gain | 1.0000 |
| 17:30786027:CAACT:C | acceptor_gain | 1.0000 |
| 17:30786028:AACT:A | acceptor_gain | 1.0000 |
| 17:30786029:ACT:A | acceptor_gain | 1.0000 |
| 17:30786030:CT:C | acceptor_gain | 1.0000 |
| 17:30786030:CTC:C | acceptor_gain | 1.0000 |
| 17:30786031:TCT:T | acceptor_gain | 1.0000 |
| 17:30786032:C:CC | acceptor_gain | 1.0000 |
| 17:30786032:C:G | acceptor_gain | 1.0000 |
| 17:30786032:C:T | acceptor_loss | 1.0000 |
| 17:30786033:T:A | acceptor_loss | 1.0000 |
| 17:30786038:A:AC | acceptor_gain | 1.0000 |
| 17:30792579:C:CT | acceptor_gain | 1.0000 |
| 17:30793477:T:C | donor_gain | 1.0000 |
| 17:30796156:ATACC:A | donor_loss | 1.0000 |
| 17:30796157:TA:T | donor_loss | 1.0000 |
| 17:30796159:C:CT | donor_loss | 1.0000 |
| 17:30796289:C:CC | acceptor_gain | 1.0000 |
| 17:30797306:TTTA:T | donor_loss | 1.0000 |
AlphaMissense
2881 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:30784207:A:G | W437R | 1.000 |
| 17:30784207:A:T | W437R | 1.000 |
| 17:30784267:A:G | W417R | 1.000 |
| 17:30784267:A:T | W417R | 1.000 |
| 17:30784299:A:T | I406K | 1.000 |
| 17:30784377:A:T | V380D | 1.000 |
| 17:30784404:A:G | L371S | 1.000 |
| 17:30784431:A:T | V362D | 1.000 |
| 17:30784437:A:T | V360D | 1.000 |
| 17:30784443:C:T | G358D | 1.000 |
| 17:30785990:C:T | G334E | 1.000 |
| 17:30792521:G:T | A293E | 1.000 |
| 17:30792568:C:A | W277C | 1.000 |
| 17:30792568:C:G | W277C | 1.000 |
| 17:30792569:C:G | W277S | 1.000 |
| 17:30792570:A:G | W277R | 1.000 |
| 17:30792570:A:T | W277R | 1.000 |
| 17:30793487:A:C | S263R | 1.000 |
| 17:30793487:A:T | S263R | 1.000 |
| 17:30793489:T:G | S263R | 1.000 |
| 17:30793501:A:G | W259R | 1.000 |
| 17:30793501:A:T | W259R | 1.000 |
| 17:30796168:A:G | W199R | 1.000 |
| 17:30796168:A:T | W199R | 1.000 |
| 17:30784228:A:G | C430R | 0.999 |
| 17:30784230:C:T | G429E | 0.999 |
| 17:30784265:C:A | W417C | 0.999 |
| 17:30784265:C:G | W417C | 0.999 |
| 17:30784275:A:T | V414D | 0.999 |
| 17:30784278:A:T | V413E | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000000348 (17:30791795 T>C), RS1000078089 (17:30810286 A>C), RS1000213657 (17:30801651 A>G), RS1000219823 (17:30791927 A>G), RS1000289677 (17:30807929 C>A,T), RS1000342430 (17:30807730 G>A), RS1000477483 (17:30813668 A>G), RS1000505316 (17:30821151 C>A), RS1000544417 (17:30801923 G>A,C), RS1000578109 (17:30783840 T>A), RS1000599655 (17:30820809 G>A,C,T), RS1000635877 (17:30807486 G>C), RS1000832417 (17:30787337 A>T), RS1000907765 (17:30791920 C>T), RS1000960326 (17:30800750 G>A)
Disease associations
OMIM: gene MIM:614853 | disease phenotypes: MIM:162210, MIM:193520, MIM:601321, MIM:162200
GenCC curated gene-disease
Mondo (4): neurofibromatosis, familial spinal (MONDO:0008078), Watson syndrome (MONDO:0008672), neurofibromatosis-Noonan syndrome (MONDO:0011035), neurofibromatosis type 1 (MONDO:0018975)
Orphanet (3): Neurofibromatosis type 1 (Orphanet:636), Neurofibromatosis-Noonan syndrome (Orphanet:638), Watson syndrome (Orphanet:3444)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
12 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000175_4 | Height | 2.000000e-09 |
| GCST005146_28 | Birth weight | 2.000000e-09 |
| GCST005993_14 | Mean corpuscular hemoglobin | 6.000000e-10 |
| GCST007692_40 | Chronic obstructive pulmonary disease | 7.000000e-08 |
| GCST008163_349 | Height | 4.000000e-08 |
| GCST011739_8 | Cutaneous leishmaniasis | 5.000000e-06 |
| GCST90002389_225 | Lymphocyte percentage of white cells | 3.000000e-12 |
| GCST90002401_586 | Platelet distribution width | 1.000000e-24 |
| GCST90020028_1413 | Hip circumference adjusted for BMI | 4.000000e-08 |
| GCST90020028_1414 | Hip circumference adjusted for BMI | 4.000000e-15 |
| GCST90020029_480 | Waist circumference adjusted for body mass index | 9.000000e-11 |
| GCST90020029_481 | Waist circumference adjusted for body mass index | 5.000000e-11 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004344 | birth weight |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0007993 | lymphocyte percentage of leukocytes |
| EFO:0007984 | platelet component distribution width |
| EFO:0008039 | BMI-adjusted hip circumference |
| EFO:0007789 | BMI-adjusted waist circumference |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009456 | Neurofibromatosis 1 | C04.557.580.600.580.590.650; C04.700.631.650; C10.562.600.500; C10.574.500.549.400; C10.668.829.675; C16.320.400.560.400; C16.320.700.633.650 |
| C563523 | Neurofibromatosis, Familial Spinal (supp.) | |
| C537393 | Neurofibromatosis-Noonan syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
27 total (human), top 27 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression, increases expression | 3 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases expression | 1 |
| testosterone undecanoate | affects cotreatment, decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| 4-aminophenylarsenoxide | affects binding, decreases reaction | 1 |
| beta-methylcholine | affects expression | 1 |
| 3-(2-hydroxy-4-(2-methylnonan-2-yl)phenyl)cyclohexan-1-ol | increases expression | 1 |
| Arsenic Trioxide | affects binding, decreases reaction | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Drugs, Chinese Herbal | increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
| Phthalic Acids | increases methylation | 1 |
| Quercetin | decreases expression | 1 |
| Silicon Dioxide | increases expression | 1 |
| Dronabinol | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Urethane | increases expression | 1 |
| Vanadates | decreases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Levonorgestrel | affects cotreatment, decreases expression | 1 |
| Antirheumatic Agents | decreases expression | 1 |
| Zinc Sulfate | decreases expression | 1 |
| Okadaic Acid | increases expression | 1 |
| Lactic Acid | decreases expression | 1 |
| Particulate Matter | increases abundance, decreases expression | 1 |
Clinical trials (associated diseases)
182 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00169611 | PHASE4 | COMPLETED | NF1-Attention: Study of Children With Neurofibromatosis Type 1 Treated by Methylphenidate |
| NCT03975829 | PHASE4 | RECRUITING | Pediatric Long-Term Follow-up and Rollover Study |
| NCT02471339 | PHASE3 | COMPLETED | Acceptance and Commitment Training for Adolescents and Young Adults With Neurofibromatosis Type 1, Plexiform Neurofibromas, and Chronic Pain |
| NCT03871257 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of the Drugs Selumetinib Versus Carboplatin/Vincristine in Patients With Neurofibromatosis and Low-Grade Glioma |
| NCT04461886 | PHASE3 | TERMINATED | A Long-term Study of NPC-12G Gel in Neurofibromatosis Type I |
| NCT04924608 | PHASE3 | ACTIVE_NOT_RECRUITING | Efficacy and Safety of Selumetinib in Adults With NF1 Who Have Symptomatic, Inoperable Plexiform Neurofibromas |
| NCT05913037 | PHASE3 | ACTIVE_NOT_RECRUITING | FCN-159 in Adult Patients With Symptomatic, Inoperable Neurofibromatosis Type 1-Related Plexiform Neurofibromas |
| NCT00021541 | PHASE2 | COMPLETED | R115777 to Treat Children With Neurofibromatosis Type 1 and Progressive Plexiform Neurofibromas |
| NCT00030264 | PHASE2 | COMPLETED | Combination Chemotherapy in Treating Patients With Neurofibromatosis and Progressive Plexiform Neurofibromas |
| NCT00076102 | PHASE2 | COMPLETED | Pirfenidone in Children and Young Adults With Neurofibromatosis Type I and Progressive Plexiform Neurofibromas |
| NCT00304083 | PHASE2 | COMPLETED | Combination Chemotherapy in Treating Patients With Stage III or Stage IV Malignant Peripheral Nerve Sheath Tumors |
| NCT00326872 | PHASE2 | TERMINATED | AZD2171 in Treating Patients With Neurofibromatosis Type 1 and Plexiform Neurofibroma and/or Neurofibroma Near the Spine |
| NCT00589784 | PHASE2 | COMPLETED | Phase II Trial of Sunitinib (SU011248) in Patients With Recurrent or Inoperable Meningioma |
| NCT00634270 | PHASE2 | COMPLETED | A Phase II Study of the mTOR Inhibitor Sirolimus in Neurofibromatosis Type 1 Related Plexiform Neurofibromas |
| NCT00754780 | PHASE2 | COMPLETED | Clinical Trial of Pirfenidone in Adult Patients With Neurofibromatosis 1 |
| NCT00846430 | PHASE2 | COMPLETED | Medical Treatment of High-Risk Neurofibromas |
| NCT00853580 | PHASE2 | COMPLETED | A Randomized Placebo-Controlled Study of Lovastatin in Children With Neurofibromatosis Type 1 |
| NCT01125046 | PHASE2 | COMPLETED | Bevacizumab in Treating Patients With Recurrent or Progressive Meningiomas |
| NCT01402817 | PHASE2 | TERMINATED | Study of Sutent®/Sunitinib (SU11248) in Subjects With NF-1 Plexiform Neurofibromas |
| NCT01412892 | PHASE2 | COMPLETED | Use of RAD001 as Monotherapy in the Treatment of Neurofibromatosis 1 Related Internal Plexiform Neurofibromas |
| NCT01553149 | PHASE2 | COMPLETED | Low-Dose or High-Dose Lenalidomide in Treating Younger Patients With Recurrent, Refractory, or Progressive Pilocytic Astrocytoma or Optic Pathway Glioma |
| NCT01673009 | PHASE2 | COMPLETED | Phase II Study of Gleevec/Imatinib Mesylate (STI-571, NCS 716051) in Neurofibromatosis (NF1) Patients With Plexiform Neurofibromas |
| NCT01968590 | PHASE2 | TERMINATED | Vitamin D Supplementation for Adults With Neurofibromatosis Type 1 (NF1) |
| NCT02096471 | PHASE2 | COMPLETED | MEK Inhibitor PD-0325901 Trial in Adolescents and Adults With NF1 |
| NCT02101736 | PHASE2 | COMPLETED | Cabozantinib for Plexiform Neurofibromas (PN) in Subjects With NF1 in Children and Adults |
| NCT02332902 | PHASE2 | COMPLETED | Everolimus for Treatment of Disfiguring Cutaneous Lesions in Neurofibromatosis1 CRAD001CUS232T |
| NCT02407405 | PHASE2 | ACTIVE_NOT_RECRUITING | MEK 1/2 Inhibitor Selumetinib (AZD6244 Hydrogen Sulfate) in Adults With Neurofibromatosis Type 1 (NF1) and Inoperable Plexiform Neurofibromas |
| NCT02728388 | PHASE2 | RECRUITING | Photodynamic Therapy for Benign Dermal Neurofibromas- Phase II |
| NCT02839720 | PHASE2 | COMPLETED | Selumetinib in Treating Patients With Neurofibromatosis Type 1 and Cutaneous Neurofibroma |
| NCT02964884 | PHASE2 | ACTIVE_NOT_RECRUITING | Interventions for Reading Disabilities in NF1 |
| NCT03090971 | PHASE2 | COMPLETED | Use of Topical Liquid Diclofenac Following Laser Microporation of Cutaneous Neurofibromas in Patients With NF1 |
| NCT03109301 | PHASE2 | WITHDRAWN | Mitogen Activated Protein Kinase Kinase (MEK1/2) Inhibitor Selumetinib (AZD6244 Hydrogen Sulfate) in People With Neurofibromatosis Type 1 (NF1) Mutated Gastrointestinal Stromal Tumors (GIST) |
| NCT03190915 | PHASE2 | ACTIVE_NOT_RECRUITING | Trametinib in Treating Patients With Relapsed or Refractory Juvenile Myelomonocytic Leukemia |
| NCT03231306 | PHASE2 | COMPLETED | Phase II Study of Binimetinib in Children and Adults With NF1 Plexiform Neurofibromas |
| NCT03433183 | PHASE2 | COMPLETED | SARC031: MEK Inhibitor Selumetinib (AZD6244) in Combination With the mTOR Inhibitor Sirolimus for Patients With Malignant Peripheral Nerve Sheath Tumors |
| NCT03741101 | PHASE2 | UNKNOWN | Treatment of NF1-related Plexiform Neurofibroma With Trametinib |
| NCT03962543 | PHASE2 | ACTIVE_NOT_RECRUITING | MEK Inhibitor Mirdametinib (PD-0325901) in Patients With Neurofibromatosis Type 1 Associated Plexiform Neurofibromas |
| NCT04435665 | PHASE2 | COMPLETED | NFX-179 Topical Gel Treatment in Adults With Neurofibromatosis 1 (NF1) and Cutaneous Neurofibromas (cNF) |
| NCT04481035 | PHASE2 | COMPLETED | Antioxidant Therapy With N-acetylcysteine for Learning and Motor Behavior in Children With Neurofibromatosis Type 1 |
| NCT04481048 | PHASE2 | ACTIVE_NOT_RECRUITING | Antioxidant Therapy With N-acetylcysteine for Children With Neurofibromatosis Type 1 |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cutaneous leishmaniasis, neurofibromatosis type 1, neurofibromatosis, familial spinal, neurofibromatosis-Noonan syndrome, Watson syndrome