CRYAB
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Also known as HSPB5
Summary
CRYAB (crystallin alpha B, HGNC:2389) is a protein-coding gene on chromosome 11q23.1, encoding Alpha-crystallin B chain (P02511). May contribute to the transparency and refractive index of the lens.
Mammalian lens crystallins are divided into alpha, beta, and gamma families. Alpha crystallins are composed of two gene products: alpha-A and alpha-B, for acidic and basic, respectively. Alpha crystallins can be induced by heat shock and are members of the small heat shock protein (HSP20) family. They act as molecular chaperones although they do not renature proteins and release them in the fashion of a true chaperone; instead they hold them in large soluble aggregates. These heterogeneous aggregates consist of 30-40 subunits; the alpha-A and alpha-B subunits have a 3:1 ratio, respectively. Two additional functions of alpha crystallins are an autokinase activity and participation in the intracellular architecture. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. Alpha-A and alpha-B gene products are differentially expressed; alpha-A is preferentially restricted to the lens and alpha-B is expressed widely in many tissues and organs. Elevated expression of alpha-B crystallin occurs in many neurological diseases; a missense mutation cosegregated in a family with a desmin-related myopathy. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 1410 — RefSeq curated summary.
At a glance
- Gene–disease (curated): myofibrillar myopathy 2 (Definitive, GenCC) — +7 more curated relationships
- GWAS associations: 4
- Clinical variants (ClinVar): 376 total — 16 pathogenic, 5 likely-pathogenic
- Phenotypes (HPO): 60
- Druggable target: yes
- MANE Select transcript:
NM_001289808
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2389 |
| Approved symbol | CRYAB |
| Name | crystallin alpha B |
| Location | 11q23.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HSPB5 |
| Ensembl gene | ENSG00000109846 |
| Ensembl biotype | protein_coding |
| OMIM | 123590 |
| Entrez | 1410 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 19 protein_coding, 2 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000227251, ENST00000524660, ENST00000525823, ENST00000526167, ENST00000526180, ENST00000527899, ENST00000527950, ENST00000528628, ENST00000528961, ENST00000529647, ENST00000531198, ENST00000533280, ENST00000533475, ENST00000533879, ENST00000533971, ENST00000616970, ENST00000650687, ENST00000651164, ENST00000651650, ENST00000652223, ENST00000652606, ENST00000858791
RefSeq mRNA: 6 — MANE Select: NM_001289808
NM_001289807, NM_001289808, NM_001330379, NM_001368245, NM_001368246, NM_001885
CCDS: CCDS81626, CCDS8351
Canonical transcript exons
ENST00000650687 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002175177 | 111911524 | 111911770 |
| ENSE00003759983 | 111910327 | 111910449 |
| ENSE00003892258 | 111908564 | 111908967 |
Expression profiles
Bgee: expression breadth ubiquitous, 289 present calls, max score 99.95.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 446.4261 / max 32202.3878, expressed in 1192 samples.
FANTOM5 promoters (17 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 122295 | 386.2922 | 1054 |
| 206448 | 21.8253 | 805 |
| 122298 | 14.5154 | 854 |
| 206447 | 8.1665 | 534 |
| 122296 | 6.1693 | 683 |
| 122291 | 5.8711 | 320 |
| 122290 | 0.6469 | 102 |
| 122299 | 0.6422 | 371 |
| 122289 | 0.5475 | 91 |
| 122287 | 0.5422 | 93 |
Top tissues by expression
303 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| middle frontal gyrus | UBERON:0002702 | 99.95 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 99.95 | gold quality |
| cardiac ventricle | UBERON:0002082 | 99.94 | gold quality |
| heart left ventricle | UBERON:0002084 | 99.94 | gold quality |
| right atrium auricular region | UBERON:0006631 | 99.94 | gold quality |
| cardiac atrium | UBERON:0002081 | 99.93 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 99.93 | gold quality |
| apex of heart | UBERON:0002098 | 99.92 | gold quality |
| olfactory bulb | UBERON:0002264 | 99.92 | gold quality |
| cranial nerve II | UBERON:0000941 | 99.91 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.91 | gold quality |
| heart right ventricle | UBERON:0002080 | 99.91 | gold quality |
| spinal cord | UBERON:0002240 | 99.91 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.91 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 99.91 | gold quality |
| myocardium | UBERON:0002349 | 99.90 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 99.88 | gold quality |
| tibialis anterior | UBERON:0001385 | 99.87 | gold quality |
| medial globus pallidus | UBERON:0002477 | 99.86 | gold quality |
| body of tongue | UBERON:0011876 | 99.86 | gold quality |
| muscle of leg | UBERON:0001383 | 99.85 | gold quality |
| globus pallidus | UBERON:0001875 | 99.85 | gold quality |
| metanephros cortex | UBERON:0010533 | 99.83 | gold quality |
| tibial nerve | UBERON:0001323 | 99.82 | gold quality |
| diaphragm | UBERON:0001103 | 99.81 | gold quality |
| muscle organ | UBERON:0001630 | 99.81 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 99.81 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 99.81 | gold quality |
| biceps brachii | UBERON:0001507 | 99.78 | gold quality |
| vena cava | UBERON:0004087 | 99.78 | gold quality |
Single-cell (SCXA)
Detected in 30 experiment(s), a significant marker in 28.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9435 | yes | 11122.19 |
| E-CURD-126 | yes | 8933.11 |
| E-MTAB-8142 | yes | 7781.15 |
| E-GEOD-135922 | yes | 7545.43 |
| E-HCAD-11 | yes | 6916.81 |
| E-GEOD-84465 | yes | 5209.23 |
| E-MTAB-8410 | yes | 5084.18 |
| E-CURD-46 | yes | 3911.17 |
| E-GEOD-180759 | yes | 3753.33 |
| E-HCAD-31 | yes | 3629.92 |
| E-HCAD-25 | yes | 3369.98 |
| E-MTAB-6701 | yes | 2528.78 |
| E-HCAD-13 | yes | 2517.80 |
| E-HCAD-35 | yes | 2163.59 |
| E-MTAB-10290 | yes | 1580.38 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AHR, ARNT, ESR1, ETS1, GATA3, HMGA1, HSF1, HSF2, HSF4, MAF, MAFA, MAFB, NR3C1, PAX6, RARB, RXRA, RXRB, SMARCA1, SOX17, SP1, SRF, TFAP2A, TFAP2B, TP53, TP73
miRNA regulators (miRDB)
12 targeting CRYAB, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-9718 | 99.94 | 68.91 | 918 |
| HSA-MIR-383-3P | 99.85 | 65.84 | 1359 |
| HSA-MIR-92A-2-5P | 99.75 | 67.01 | 2164 |
| HSA-MIR-1179 | 99.71 | 68.70 | 1040 |
| HSA-MIR-578 | 99.46 | 68.36 | 1787 |
| HSA-MIR-100-3P | 99.20 | 67.33 | 672 |
| HSA-MIR-3145-3P | 98.85 | 69.07 | 2031 |
| HSA-MIR-367-5P | 98.84 | 67.18 | 902 |
| HSA-MIR-628-5P | 98.36 | 67.74 | 844 |
| HSA-MIR-653-3P | 98.31 | 67.71 | 1542 |
| HSA-MIR-938 | 97.41 | 68.28 | 656 |
| HSA-MIR-5579-3P | 97.00 | 68.81 | 1111 |
Literature-anchored findings (GeneRIF, showing 40)
- Alpha crystallin is a moonlighting protein that functions as a heat shock protein as well as a lens crystallin. (PMID:10217480)
- mutation causes dominant congenital posterior polar cataract (PMID:11577372)
- Of the 24 genes regulated during osteoblastic differentiation, only one, the alpha B crystalline gene, showed evidence of linkage. (PMID:11771659)
- HSP27 and alphaB-crystallin are increased, phosphorylated and localized in aggresomes when proteasome activity is inhibited (PMID:11926998)
- suppression of dithiothreitol-induced aggregation of abrin by alpha B-crystallin (PMID:12095619)
- These findings indicate that alpha B-crystallin is a novel negative regulator of myogenic apoptosis that directly links the differentiation program to apoptosis resistance. (PMID:12140279)
- the involvement of alphaB-crystallin in the ubiquitin/proteasome pathway in a phosphorylation- and cell cycle-dependent manner (PMID:12468532)
- The regions of alpha B crystallin most affected by interaction with ATP are near putative substrate binding regions and in the C-terminal extension, as identified by hydrogen-deuterium exchange. (PMID:12501218)
- CRYAB shows increased transcript levels in Alzheimer’s disease brains. (PMID:12600716)
- The results indicate that Hsp27 promotes stability of alpha B-crystallin. (PMID:12646227)
- CRYAB is a nuclear speckle component in unstressed cells in tissue culture. (PMID:12837281)
- The peripheral response towards the myelin antigen alpha B-crystallin is neither quantitatively nor qualitatively peculiar to multiple sclerosis (MS) and is not a prerequisite for MS induction in this Sardininan population. (PMID:12940843)
- Alpha B-crystallin peptide 1-16, generated as a remnant epitope following digestion with natural gelatinase B, provokes a significant T cell response in alpha B-crystallin knockout mice. (PMID:12965253)
- the protective effect of alphaB-crystallin requires synthesis of the endogenous heat shock proteins (PMID:14523008)
- the SRLFDQFFG sequence region contributes to the oligomer dynamics in addition to the higher order assembly and structural stability, and is one of the critical motifs in structure-function regulation of alpha A- and alpha B-crystallin (PMID:14532291)
- alphaB-crystallin bound in the position of the N2B region of titin, but not to PEVK region (PMID:14676215)
- A truncating mutation in the C-terminal region of alphaB-crystallin was determined in 2 patients with adult-onset myofibrillar myopathy; the region is crucial for the solubilization and chaperone functions of the molecule. (PMID:14681890)
- Autoreactive alpha B-crystallin-specific T helper type 1 (Th1) cells may have the potential to contribute to the pathogenesis of multiple sclerosis. (PMID:14743435)
- accumulation and abnormal modification of alpha-crystallins might be implicated in the pathogenic mechanism of anterior polar cataracts. (PMID:15004872)
- Phosphorylation of alphaB-crystallin alters chaperone function through loss of dimeric substructure (PMID:15117944)
- CRYAB was expressed in vivo in lungs containing metastasized MDA-MB-435 cells but not in normal lung tissue of athymic mice, suggesting that it is an important cellular protein that is down regulated through BRMS1 mediated metastasis suppression. (PMID:15168732)
- alpha-synuclein and alphaB-crystallin interact readily with each other and affect each other’s properties, in particular alpha-synuclein fibril formation and alphaB-crystallin chaperone action (PMID:15236975)
- presence of WT-alphaB in the alpha-crystallin heteroaggregate leads to packing-induced structural changes which influences the oligomerization and modulate chaperone activity (PMID:15284238)
- HSF4 binds to alphaB-crystallin, Hsp70, and Hsp82 promoters and has a role in interacting with the canonical heat shock element of the alphaB-crystallin gene (PMID:15308659)
- Alpha-B-crystallin associates with the perinuclear Golgi in a cell cycle-dependent fashion in U373 human glioblastoma cells. It appears in the nascent Golgi immediately following cytokinesis. (PMID:15339919)
- Studies with synchronized human glioblastoma cell line U373MG suggest association of aB-crystallin with cell cycle-dependent Golgi reorganization. (PMID:15339919)
- structure activity relationship (PMID:15382236)
- Using a cross-linker, close proximity of C termini of alpha B and alpha C crystallins was demonstrated. (PMID:15388868)
- alphaB-crystallin has a phosphorylation-dependent role in the ubiquitination of a component of SC35 speckles (PMID:15511225)
- Alpha B-crystallin is a major chaperone in multiple system atrophy. A role for this protein in the formation of inclusion bodies in glial cells is suggested. (PMID:15639800)
- alpha B-crystallin is a novel inhibitor of TRAIL-induced apoptosis that suppresses the activation of caspase-3. (PMID:15653686)
- isothermal titration calorimetric analysis of hydrophobicity and the chaperone-like function of alphaA- and alphaB-crystallin (PMID:15817465)
- The role of CRYAB in the reactivation of denaturant-inactivated G6PD is reported. (PMID:15952936)
- role of CRYA2 in protein conformational diseases, particularly in Alzheimer’s disease (PMID:16053447)
- establish the importance of residues 60-71 in oligomerization of alphaB-crystallin and subunit interaction between alphaB- and alphaA-crystallins (PMID:16142923)
- Our results suggest that a variety of oligomers composed of different proportions of different sHSPs may form in cell types expressing multiple sHSPs. (PMID:16225851)
- Identification of protein domains of alphaB crystallin that are needed for chaperone activity. (PMID:16274233)
- alphaB-crystallin is a novel oncoprotein expressed in basal-like breast carcinomas that independently predicts shorter survival. (PMID:16395408)
- role of pH, Ca2+, and ATP in regulating the subunit dynamics of alphaB crystallin was investigated; a model for the relationship between the subunit dynamics and chaperone activity of alphaB crystallin was established (PMID:16480679)
- Arg157His mutation of alphaB crystallin may be involved in the pathogenesis of dilated cardiomyopathy via impaired accommodation to the heart-specific N2B domain of titin/connectin. (PMID:16483541)
Cross-species orthologs
22 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cryaba | ENSDARG00000042621 |
| danio_rerio | cryabb | ENSDARG00000101380 |
| mus_musculus | Cryab | ENSMUSG00000032060 |
| rattus_norvegicus | Cryab | ENSRNOG00000010524 |
| drosophila_melanogaster | Hsp22 | FBGN0001223 |
| drosophila_melanogaster | Hsp23 | FBGN0001224 |
| drosophila_melanogaster | Hsp26 | FBGN0001225 |
| drosophila_melanogaster | Hsp67Ba | FBGN0001227 |
| drosophila_melanogaster | Hsp67Bc | FBGN0001229 |
| drosophila_melanogaster | l(2)efl | FBGN0011296 |
| drosophila_melanogaster | CG14207 | FBGN0031037 |
| caenorhabditis_elegans | WBGENE00002011 | |
| caenorhabditis_elegans | WBGENE00002015 | |
| caenorhabditis_elegans | WBGENE00002016 | |
| caenorhabditis_elegans | WBGENE00002017 | |
| caenorhabditis_elegans | WBGENE00002018 | |
| caenorhabditis_elegans | WBGENE00002019 | |
| caenorhabditis_elegans | WBGENE00002020 | |
| caenorhabditis_elegans | WBGENE00002023 | |
| caenorhabditis_elegans | WBGENE00008591 | |
| caenorhabditis_elegans | WBGENE00008592 | |
| caenorhabditis_elegans | hsp-12.1 | WBGENE00011906 |
Paralogs (8): HSPB6 (ENSG00000004776), HSPB1 (ENSG00000106211), HSPB8 (ENSG00000152137), CRYAA (ENSG00000160202), HSPB3 (ENSG00000169271), HSPB2 (ENSG00000170276), HSPB7 (ENSG00000173641), HSPB9 (ENSG00000260325)
Protein
Protein identifiers
Alpha-crystallin B chain — P02511 (reviewed: P02511)
Alternative names: Alpha(B)-crystallin, Heat shock protein beta-5, Heat shock protein family B member 5, Renal carcinoma antigen NY-REN-27, Rosenthal fiber component
All UniProt accessions (7): P02511, A0A024R3B9, E9PJL7, E9PNH7, E9PRA8, E9PS12, V9HW27
UniProt curated annotations — full annotation on UniProt →
Function. May contribute to the transparency and refractive index of the lens. Has chaperone-like activity, preventing aggregation of various proteins under a wide range of stress conditions. In lens epithelial cells, stabilizes the ATP6V1A protein, preventing its degradation by the proteasome.
Subunit / interactions. Heteromer composed of three CRYAA and one CRYAB subunits. Aggregates with homologous proteins, including the small heat shock protein HSPB1, to form large heteromeric complexes. Inter-subunit bridging via zinc ions enhances stability, which is crucial as there is no protein turn over in the lens. Interacts with HSPBAP1 and TTN/titin. Interacts with TMEM109; in the cellular response to DNA damage. Interacts with DES; binds rapidly during early stages of DES filament assembly and a reduced binding seen in the later stages. Interacts with TMED10; the interaction mediates the translocation from the cytoplasm into the ERGIC (endoplasmic reticulum-Golgi intermediate compartment) and thereby secretion. Interacts with ATP6V1A and with MTOR, forming a ternary complex.
Subcellular location. Cytoplasm. Nucleus. Secreted. Lysosome.
Tissue specificity. Lens as well as other tissues. Expressed in myocardial tissue.
Disease relevance. Myopathy, myofibrillar, 2A, adult-onset (MFM2A) [MIM:608810] A form of myofibrillar myopathy, a group of chronic neuromuscular disorders characterized at ultrastructural level by disintegration of the sarcomeric Z disk and myofibrils, and replacement of the normal myofibrillar markings by small dense granules, or larger hyaline masses, or amorphous material. MFM2A is an autosomal dominant form characterized by weakness of the proximal and distal limb muscles, weakness of the neck, velopharynx and trunk muscles, respiratory insufficiency, hypertrophic cardiomyopathy, and cataract. The disease is caused by variants affecting the gene represented in this entry. Cataract 16, multiple types (CTRCT16) [MIM:613763] An opacification of the crystalline lens of the eye that frequently results in visual impairment or blindness. Opacities vary in morphology, are often confined to a portion of the lens, and may be static or progressive. In general, the more posteriorly located and dense an opacity, the greater the impact on visual function. CTRCT16 includes posterior polar cataract, among others. Posterior polar cataract is a subcapsular opacity, usually disk-shaped, located at the back of the lens. The disease is caused by variants affecting the gene represented in this entry. CRYAB mutations may be involved in restrictive cardiomyopathy (RCM), a rare non-ischemic myocardial disease. RCM is characterized by restrictive ventricular-filling physiology in the presence of normal or reduced diastolic and/or systolic volumes (of 1 or both ventricles), biatrial enlargement, and normal ventricular wall thickness. Myopathy, myofibrillar, 2B, infantile-onset (MFM2B) [MIM:613869] A form of myofibrillar myopathy, a group of chronic neuromuscular disorders characterized at ultrastructural level by disintegration of the sarcomeric Z disk and myofibrils, and replacement of the normal myofibrillar markings by small dense granules, or larger hyaline masses, or amorphous material. MFM2B is an autosomal recessive form characterized by onset in the first weeks of life after a normal neonatal period. Affected infants show rapidly progressive muscular rigidity of the trunk and limbs associated with increasing respiratory difficulty resulting in death before age 3 years. The disease is caused by variants affecting the gene represented in this entry. Cardiomyopathy, dilated, 1II (CMD1II) [MIM:615184] A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the small heat shock protein (HSP20) family.
RefSeq proteins (6): NP_001276736, NP_001276737, NP_001317308, NP_001355174, NP_001355175, NP_001876 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001436 | Alpha-crystallin/sHSP_animal | Family |
| IPR002068 | A-crystallin/Hsp20_dom | Domain |
| IPR003090 | Alpha-crystallin_N | Domain |
| IPR008978 | HSP20-like_chaperone | Homologous_superfamily |
| IPR037882 | ACD_alphaB-crystallin | Domain |
| IPR055269 | Alpha-crystallin/HSP_16 | Family |
Pfam: PF00011, PF00525
UniProt features (43 total): strand 10, sequence variant 9, modified residue 6, binding site 5, site 3, glycosylation site 2, sequence conflict 2, helix 2, chain 1, domain 1, region of interest 1, turn 1
Structure
Experimental structures (PDB)
21 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4M5S | X-RAY DIFFRACTION | 1.37 |
| 3SGP | X-RAY DIFFRACTION | 1.4 |
| 7ROJ | X-RAY DIFFRACTION | 1.6 |
| 3SGM | X-RAY DIFFRACTION | 1.7 |
| 3SGS | X-RAY DIFFRACTION | 1.7 |
| 2Y1Y | X-RAY DIFFRACTION | 2 |
| 4M5T | X-RAY DIFFRACTION | 2 |
| 3SGR | X-RAY DIFFRACTION | 2.17 |
| 2Y1Z | X-RAY DIFFRACTION | 2.5 |
| 3SGO | X-RAY DIFFRACTION | 2.56 |
| 2WJ7 | X-RAY DIFFRACTION | 2.63 |
| 5VVV | X-RAY DIFFRACTION | 2.8 |
| 3SGN | X-RAY DIFFRACTION | 2.81 |
| 3L1G | X-RAY DIFFRACTION | 3.32 |
| 9BEE | ELECTRON MICROSCOPY | 3.4 |
| 2Y22 | X-RAY DIFFRACTION | 3.7 |
| 2YGD | ELECTRON MICROSCOPY | 9.4 |
| 3J07 | SOLID-STATE NMR, SOLUTION SCATTERING, ELECTRON MICROSCOPY | 20 |
| 2KLR | SOLID-STATE NMR | |
| 2N0K | SOLUTION NMR | |
| 6BP9 | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P02511-F1 | 75.42 | 0.39 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 68 (susceptible to oxidation); 48 (susceptible to oxidation); 60 (susceptible to oxidation)
Ligand- & substrate-binding residues (5): 83; 104; 106; 111; 119
Post-translational modifications (6): 1, 19, 45, 59, 92, 166
Glycosylation sites (2): 41, 170
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-3371571 | HSF1-dependent transactivation |
MSigDB gene sets: 491 (showing top):
GOBP_NEGATIVE_REGULATION_OF_PROTEIN_CONTAINING_COMPLEX_ASSEMBLY, GOBP_RESPONSE_TO_IONIZING_RADIATION, GRUETZMANN_PANCREATIC_CANCER_DN, GOBP_RESPONSE_TO_ESTRADIOL, PEREZ_TP63_TARGETS, ENK_UV_RESPONSE_KERATINOCYTE_UP, GOBP_NEGATIVE_REGULATION_OF_CELL_GROWTH, GOBP_NEGATIVE_REGULATION_OF_REACTIVE_OXYGEN_SPECIES_METABOLIC_PROCESS, ASTON_MAJOR_DEPRESSIVE_DISORDER_DN, GOBP_GROWTH, GOCC_CELL_SURFACE, GOBP_CELLULAR_RESPONSE_TO_GAMMA_RADIATION, GAUSSMANN_MLL_AF4_FUSION_TARGETS_E_UP, KYNG_DNA_DAMAGE_DN, MODULE_329
GO Biological Process (27): response to hypoxia (GO:0001666), lens development in camera-type eye (GO:0002088), protein folding (GO:0006457), glutathione metabolic process (GO:0006749), muscle contraction (GO:0006936), tubulin complex assembly (GO:0007021), muscle organ development (GO:0007517), response to heat (GO:0009408), negative regulation of gene expression (GO:0010629), negative regulation of cell growth (GO:0030308), microtubule polymerization or depolymerization (GO:0031109), negative regulation of protein-containing complex assembly (GO:0031333), response to estradiol (GO:0032355), negative regulation of intracellular transport (GO:0032387), protein refolding (GO:0042026), response to hydrogen peroxide (GO:0042542), negative regulation of apoptotic process (GO:0043066), regulation of programmed cell death (GO:0043067), negative regulation of DNA-templated transcription (GO:0045892), protein stabilization (GO:0050821), stress-activated MAPK cascade (GO:0051403), apoptotic process involved in morphogenesis (GO:0060561), cellular response to gamma radiation (GO:0071480), negative regulation of amyloid fibril formation (GO:1905907), negative regulation of reactive oxygen species metabolic process (GO:2000378), negative regulation of metabolic process (GO:0009892), camera-type eye development (GO:0043010)
GO Molecular Function (11): amyloid-beta binding (GO:0001540), structural molecule activity (GO:0005198), structural constituent of eye lens (GO:0005212), microtubule binding (GO:0008017), identical protein binding (GO:0042802), protein homodimerization activity (GO:0042803), protein-containing complex binding (GO:0044877), metal ion binding (GO:0046872), obsolete unfolded protein binding (GO:0051082), protein binding (GO:0005515), cytoskeletal protein binding (GO:0008092)
GO Cellular Component (21): nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), mitochondrion (GO:0005739), lysosome (GO:0005764), cytosol (GO:0005829), cell surface (GO:0009986), Z disc (GO:0030018), axon (GO:0030424), M band (GO:0031430), actin filament bundle (GO:0032432), protein-containing complex (GO:0032991), dendritic spine (GO:0043197), perikaryon (GO:0043204), extracellular exosome (GO:0070062), synaptic membrane (GO:0097060), cardiac myofibril (GO:0097512), extracellular region (GO:0005576), plasma membrane (GO:0005886), I band (GO:0031674), contractile muscle fiber (GO:0043292)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Cellular response to heat stress | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 10 |
| response to stress | 2 |
| protein-containing complex assembly | 2 |
| negative regulation of cellular process | 2 |
| protein binding | 2 |
| binding | 2 |
| intracellular membrane-bounded organelle | 2 |
| cytoplasm | 2 |
| response to decreased oxygen levels | 1 |
| camera-type eye development | 1 |
| anatomical structure development | 1 |
| cellular process | 1 |
| protein maturation | 1 |
| modified amino acid metabolic process | 1 |
| sulfur compound metabolic process | 1 |
| muscle system process | 1 |
| animal organ development | 1 |
| muscle structure development | 1 |
| response to temperature stimulus | 1 |
| gene expression | 1 |
| regulation of gene expression | 1 |
| negative regulation of macromolecule biosynthetic process | 1 |
| regulation of cell growth | 1 |
| cell growth | 1 |
| negative regulation of growth | 1 |
| microtubule cytoskeleton organization | 1 |
| regulation of protein-containing complex assembly | 1 |
| negative regulation of cellular component organization | 1 |
| response to lipid | 1 |
| response to oxygen-containing compound | 1 |
| regulation of intracellular transport | 1 |
| intracellular transport | 1 |
| negative regulation of transport | 1 |
| protein folding | 1 |
| response to reactive oxygen species | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| programmed cell death | 1 |
| regulation of cellular process | 1 |
Protein interactions and networks
STRING
2826 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CRYAB | BAG3 | O95817 | 875 |
| CRYAB | MYOT | Q9UBF9 | 851 |
| CRYAB | CRYBB2 | P43320 | 836 |
| CRYAB | CRYBB1 | P53674 | 824 |
| CRYAB | CRYBB3 | P26998 | 814 |
| CRYAB | CRYGS | P22914 | 809 |
| CRYAB | CRYBA4 | P53673 | 808 |
| CRYAB | CRYBA1 | P05813 | 756 |
| CRYAB | CRYGD | P07320 | 736 |
| CRYAB | LDB3 | O75112 | 724 |
| CRYAB | CRYBA2 | P53672 | 720 |
| CRYAB | TTN | Q8WZ42 | 707 |
| CRYAB | GJA8 | P48165 | 685 |
| CRYAB | UBB | P02248 | 685 |
| CRYAB | FLNC | Q14315 | 684 |
IntAct
201 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CRYAB | CRYAB | psi-mi:“MI:0915”(physical association) | 0.980 |
| CRYAB | CRYAB | psi-mi:“MI:0407”(direct interaction) | 0.980 |
| CRYAB | CRYAB | psi-mi:“MI:0403”(colocalization) | 0.980 |
BioGRID (341): CRYAB (Two-hybrid), HSPB1 (Two-hybrid), CRYAB (Two-hybrid), CRYAB (Two-hybrid), ACOT7 (Two-hybrid), TNPO2 (Two-hybrid), MRPL11 (Two-hybrid), TRAPPC6A (Two-hybrid), KRTAP8-1 (Two-hybrid), KRTAP19-5 (Two-hybrid), NYNRIN (Affinity Capture-MS), DDX20 (Affinity Capture-MS), SEH1L (Affinity Capture-MS), GEMIN4 (Affinity Capture-MS), IQGAP3 (Affinity Capture-MS)
ESM2 similar proteins: A5JV83, O93591, P02487, P02497, P02500, P02506, P02507, P02508, P02509, P02510, P02511, P02512, P04792, P05811, P06904, P09887, P14602, P15990, P15991, P23927, P23928, P24622, P24623, P30218, P30219, P35385, P41316, P42929, P42930, P42931, Q00649, Q05557, Q05713, Q3T149, Q5EAC9, Q5ENY9, Q5R9K0, Q5RAB0, Q5S1U1, Q60HG8
Diamond homologs: A5JV83, O14558, P02487, P02488, P02489, P02507, P02510, P02511, P02512, P04120, P04792, P05811, P06581, P06582, P14602, P15991, P23927, P23928, P30218, P30219, P34696, P35385, P41316, P42929, P42930, P42931, P82147, P97541, Q00649, Q04757, Q05557, Q05713, Q148F8, Q1RI96, Q3T149, Q5EAC9, Q5ENY9, Q5R9K0, Q5RAB0, Q5S1U1
SIGNOR signaling
6 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TFAP2A | “up-regulates quantity by expression” | CRYAB | “transcriptional regulation” |
| TFAP2B | “up-regulates quantity by expression” | CRYAB | “transcriptional regulation” |
| TP53 | “up-regulates quantity by expression” | CRYAB | “transcriptional regulation” |
| CRYAB | “up-regulates activity” | CRYGD | binding |
| CRYAB | “up-regulates activity” | CRYGC | binding |
| CRYAB | “up-regulates activity” | CRYGS | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 119 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| lens development in camera-type eye | 5 | 18.2× | 8e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
376 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 16 |
| Likely pathogenic | 5 |
| Uncertain significance | 221 |
| Likely benign | 101 |
| Benign | 8 |
Top pathogenic / likely-pathogenic (21)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1070020 | NC_000011.9:g.(?111779478)(111782458_?)del | Pathogenic |
| 1322163 | NM_001289808.2(CRYAB):c.76C>T (p.Gln26Ter) | Pathogenic |
| 1392460 | NM_001289808.2(CRYAB):c.145del (p.Leu49fs) | Pathogenic |
| 1455522 | NC_000011.9:g.(?111779488)(111780026_?)del | Pathogenic |
| 16953 | NM_001289808.2(CRYAB):c.358A>G (p.Arg120Gly) | Pathogenic |
| 16954 | NM_001289808.2(CRYAB):c.450del (p.Lys150fs) | Pathogenic |
| 1710339 | NM_001289808.2(CRYAB):c.466del (p.Glu156fs) | Pathogenic |
| 2424297 | NC_000011.9:g.(?111779488)(111782448_?)del | Pathogenic |
| 29669 | NM_001289808.2(CRYAB):c.60del (p.Ser21fs) | Pathogenic |
| 41927 | NM_001289808.2(CRYAB):c.418G>A (p.Asp140Asn) | Pathogenic |
| 41928 | NM_001289808.2(CRYAB):c.58C>T (p.Pro20Ser) | Pathogenic |
| 41930 | NM_001289808.2(CRYAB):c.325G>C (p.Asp109His) | Pathogenic |
| 4709887 | NM_001289808.2(CRYAB):c.59C>G (p.Pro20Arg) | Pathogenic |
| 4721629 | NM_001289808.2(CRYAB):c.32_33del (p.Arg11fs) | Pathogenic |
| 4736669 | NM_001289808.2(CRYAB):c.101del (p.Glu34fs) | Pathogenic |
| 804222 | NM_001289808.2(CRYAB):c.514del (p.Ala172fs) | Pathogenic |
| 1184448 | NM_001289808.2(CRYAB):c.525del (p.Lys175fs) | Likely pathogenic |
| 1677720 | NM_001289808.2(CRYAB):c.119del (p.Thr40fs) | Likely pathogenic |
| 2630615 | NM_001289808.2(CRYAB):c.100dup (p.Glu34fs) | Likely pathogenic |
| 265829 | NM_001289808.2(CRYAB):c.326A>G (p.Asp109Gly) | Likely pathogenic |
| 4687943 | NM_001289808.2(CRYAB):c.527A>G (p.Ter176Trp) | Likely pathogenic |
SpliceAI
551 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:111910324:TA:T | donor_loss | 1.0000 |
| 11:111910325:A:AC | donor_gain | 1.0000 |
| 11:111910325:AC:A | donor_gain | 1.0000 |
| 11:111910326:C:CT | donor_gain | 1.0000 |
| 11:111910326:CC:C | donor_gain | 1.0000 |
| 11:111910326:CCTG:C | donor_gain | 1.0000 |
| 11:111910326:CCTGG:C | donor_gain | 1.0000 |
| 11:111910445:CGCAT:C | acceptor_gain | 1.0000 |
| 11:111910447:CAT:C | acceptor_gain | 1.0000 |
| 11:111910448:AT:A | acceptor_gain | 1.0000 |
| 11:111910449:TCT:T | acceptor_loss | 1.0000 |
| 11:111910450:C:CC | acceptor_gain | 1.0000 |
| 11:111910456:A:AC | acceptor_gain | 1.0000 |
| 11:111910456:A:C | acceptor_gain | 1.0000 |
| 11:111910460:CAAGG:C | acceptor_gain | 1.0000 |
| 11:111910461:A:T | acceptor_gain | 1.0000 |
| 11:111910464:G:C | acceptor_gain | 1.0000 |
| 11:111910464:G:GC | acceptor_gain | 1.0000 |
| 11:111908974:C:CT | acceptor_gain | 0.9900 |
| 11:111908974:C:T | acceptor_gain | 0.9900 |
| 11:111910326:CCT:C | donor_gain | 0.9900 |
| 11:111910446:GCAT:G | acceptor_gain | 0.9900 |
| 11:111910447:CATC:C | acceptor_gain | 0.9900 |
| 11:111911519:CTCA:C | donor_loss | 0.9900 |
| 11:111911520:TCA:T | donor_loss | 0.9900 |
| 11:111911521:CA:C | donor_loss | 0.9900 |
| 11:111911522:A:AC | donor_gain | 0.9900 |
| 11:111911523:C:CC | donor_gain | 0.9900 |
| 11:111911523:C:CG | donor_loss | 0.9900 |
| 11:111913438:TAG:T | acceptor_loss | 0.9900 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000403837 (11:111918856 A>G,T), RS1000792864 (11:111912487 G>A,C), RS1001245516 (11:111924842 G>A,C), RS1001320644 (11:111925123 A>G), RS1002278304 (11:111911708 T>A,C), RS1002509286 (11:111917044 A>G), RS1002610421 (11:111910209 C>A,T), RS1003261138 (11:111921478 A>G,T), RS1003292118 (11:111921761 T>A,C), RS1003949256 (11:111916264 C>T), RS1004123270 (11:111909729 G>C), RS1004407909 (11:111922254 C>A,T), RS1004813728 (11:111921113 G>A), RS1005927969 (11:111912862 G>A,T), RS1006212047 (11:111908088 G>A)
Disease associations
OMIM: gene MIM:123590 | disease phenotypes: MIM:615184, MIM:608810, MIM:613763, MIM:613869, MIM:115210, MIM:192600, MIM:278730
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| myofibrillar myopathy 2 | Definitive | Autosomal dominant |
| fatal infantile hypertonic myofibrillar myopathy | Strong | Autosomal recessive |
| cataract 16 multiple types | Strong | Autosomal dominant |
| familial isolated dilated cardiomyopathy | Supportive | Autosomal dominant |
| early-onset lamellar cataract | Supportive | Autosomal dominant |
| early-onset nuclear cataract | Supportive | Autosomal dominant |
| early-onset posterior polar cataract | Supportive | Autosomal dominant |
| dilated cardiomyopathy 1II | Limited | Autosomal dominant |
Mondo (15): dilated cardiomyopathy 1II (MONDO:0014073), myofibrillar myopathy 2 (MONDO:0012130), cataract 16 multiple types (MONDO:0013411), fatal infantile hypertonic myofibrillar myopathy (MONDO:0013472), dilated cardiomyopathy (MONDO:0005021), cardiomyopathy, familial restrictive, 1 (MONDO:0007270), cardiomyopathy (MONDO:0004994), congestive heart failure (MONDO:0005009), hypertrophic cardiomyopathy (MONDO:0005045), familial hypertrophic cardiomyopathy (MONDO:0024573), xeroderma pigmentosum group D (MONDO:0010212), (MONDO:0015470), early-onset lamellar cataract (MONDO:0018611), early-onset nuclear cataract (MONDO:0020376), early-onset posterior polar cataract (MONDO:0020378)
Orphanet (14): Familial isolated dilated cardiomyopathy (Orphanet:154), Fatal infantile hypertonic myofibrillar myopathy (Orphanet:280553), Alpha-B crystallin-related late-onset myopathy (Orphanet:399058), Early onset non-syndromic cataract (Orphanet:91492), Early-onset partial cataract (Orphanet:98992), Early-onset posterior polar cataract (Orphanet:98993), Early-onset zonular cataract (Orphanet:98995), Dilated cardiomyopathy (Orphanet:217604), Familial isolated restrictive cardiomyopathy (Orphanet:75249), Rare cardiomyopathy (Orphanet:167848), Rare hypertrophic cardiomyopathy (Orphanet:217569), Rare familial disorder with hypertrophic cardiomyopathy (Orphanet:99739), NON RARE IN EUROPE: Familial isolated hypertrophic cardiomyopathy (Orphanet:155), OBSOLETE: Xeroderma pigmentosum complementation group D (Orphanet:276258)
HPO phenotypes
60 total (30 of 60 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000467 | Neck muscle weakness |
| HP:0000518 | Cataract |
| HP:0000519 | Developmental cataract |
| HP:0000556 | Retinal dystrophy |
| HP:0000969 | Edema |
| HP:0001115 | Posterior polar cataract |
| HP:0001142 | Lenticonus |
| HP:0001265 | Hyporeflexia |
| HP:0001276 | Hypertonia |
| HP:0001288 | Gait disturbance |
| HP:0001349 | Facial diplegia |
| HP:0001522 | Death in infancy |
| HP:0001612 | Weak cry |
| HP:0001618 | Dysphonia |
| HP:0001635 | Congestive heart failure |
| HP:0001638 | Cardiomyopathy |
| HP:0001644 | Dilated cardiomyopathy |
| HP:0001653 | Mitral regurgitation |
| HP:0001727 | Thromboembolic stroke |
| HP:0002015 | Dysphagia |
| HP:0002063 | Rigidity |
| HP:0002093 | Respiratory insufficiency |
| HP:0002104 | Apnea |
| HP:0002747 | Respiratory insufficiency due to muscle weakness |
| HP:0002875 | Exertional dyspnea |
| HP:0002878 | Respiratory failure |
| HP:0003198 | Myopathy |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008362_43 | Birth weight | 1.000000e-08 |
| GCST010320_3 | PR interval | 2.000000e-11 |
| GCST010321_68 | PR interval | 3.000000e-13 |
| GCST012227_630 | Hip circumference adjusted for BMI | 4.000000e-08 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004344 | birth weight |
| EFO:0004462 | PR interval |
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (9)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D024741 | Cardiomyopathy, Hypertrophic, Familial | C14.280.238.100.500; C14.280.484.048.750.070.160.500; C16.320.160 |
| C563848 | Alpha-B Crystallinopathy (supp.) | |
| C566168 | Cardiomyopathy, Familial Restrictive, 1 (supp.) | |
| C563333 | Cataract, Age-Related Nuclear (supp.) | |
| C565134 | Cataract, Posterior Polar, 2 (supp.) | |
| C562591 | Xeroderma Pigmentosum, Complementation Group D (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3621022 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
8 potent at pChembl≥5 of 9 total, top 8 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.75 | EC50 | 18 | nM | CHEMBL4204376 |
| 7.58 | EC50 | 26 | nM | CHEMBL4209249 |
| 7.24 | EC50 | 57 | nM | CHEMBL4203007 |
| 7.19 | EC50 | 64 | nM | CHEMBL4218328 |
| 6.97 | EC50 | 106 | nM | CHEMBL4205794 |
| 6.50 | EC50 | 320 | nM | CHEMBL169046 |
| 5.85 | EC50 | 1420 | nM | LANOSTEROL |
| 5.51 | EC50 | 3116 | nM | CHEMBL4203007 |
PubChem BioAssay actives
8 with measured affinity, of 131 total; 7 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2R,3R,5R,10S,13R,14R,17R)-2-fluoro-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-4,4,10,13,14-pentamethyl-2,3,5,6,7,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-ol | 1386480: Inhibition of alpha-crystallin B R120G mutant (unknown origin)-induced intracellular protein aggregation expressed in human HeLa cells or HLE-B3 cells incubated for 6 to 8 hrs by fluorescence microscopy relative to untreated control | ec50 | 0.0180 | uM |
| (2R,3S,5R,10S,13R,14R,17R)-2-fluoro-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-4,4,10,13,14-pentamethyl-2,3,5,6,7,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-ol | 1386480: Inhibition of alpha-crystallin B R120G mutant (unknown origin)-induced intracellular protein aggregation expressed in human HeLa cells or HLE-B3 cells incubated for 6 to 8 hrs by fluorescence microscopy relative to untreated control | ec50 | 0.0260 | uM |
| (3S,5R,10S,13R,14R,17R)-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-4,4,10,13,14-pentamethyl-2,3,5,6,7,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-ol | 1386480: Inhibition of alpha-crystallin B R120G mutant (unknown origin)-induced intracellular protein aggregation expressed in human HeLa cells or HLE-B3 cells incubated for 6 to 8 hrs by fluorescence microscopy relative to untreated control | ec50 | 0.0570 | uM |
| (3S,5R,10S,13R,14R,17R)-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-4,4,10,13,14-pentamethyl-2,3,5,6,12,15,16,17-octahydro-1H-cyclopenta[a]phenanthren-3-ol | 1386480: Inhibition of alpha-crystallin B R120G mutant (unknown origin)-induced intracellular protein aggregation expressed in human HeLa cells or HLE-B3 cells incubated for 6 to 8 hrs by fluorescence microscopy relative to untreated control | ec50 | 0.0640 | uM |
| (5R,10S,13R,14R,17R)-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-4,4,10,13,14-pentamethyl-1,2,5,6,7,11,12,15,16,17-decahydrocyclopenta[a]phenanthren-3-one | 1386480: Inhibition of alpha-crystallin B R120G mutant (unknown origin)-induced intracellular protein aggregation expressed in human HeLa cells or HLE-B3 cells incubated for 6 to 8 hrs by fluorescence microscopy relative to untreated control | ec50 | 0.1060 | uM |
| (3S,8S,9S,10R,13R,14S,17R)-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-10,13-dimethyl-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-ol | 1386480: Inhibition of alpha-crystallin B R120G mutant (unknown origin)-induced intracellular protein aggregation expressed in human HeLa cells or HLE-B3 cells incubated for 6 to 8 hrs by fluorescence microscopy relative to untreated control | ec50 | 0.3200 | uM |
| (3S,5R,10S,13R,14R,17R)-4,4,10,13,14-pentamethyl-17-[(2R)-6-methylhept-5-en-2-yl]-2,3,5,6,7,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-ol | 1386480: Inhibition of alpha-crystallin B R120G mutant (unknown origin)-induced intracellular protein aggregation expressed in human HeLa cells or HLE-B3 cells incubated for 6 to 8 hrs by fluorescence microscopy relative to untreated control | ec50 | 1.4200 | uM |
CTD chemical–gene interactions
115 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases expression | 5 |
| monomethylarsonous acid | decreases expression, increases expression | 4 |
| Silicon Dioxide | decreases expression, increases expression | 4 |
| Benzo(a)pyrene | increases expression, increases methylation | 3 |
| Cadmium | increases abundance, increases expression | 3 |
| Copper | increases expression, affects binding, decreases expression | 3 |
| Doxorubicin | decreases response to substance, affects expression, decreases expression | 3 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 3 |
| chloropicrin | increases expression | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment | 2 |
| dimethylarsinous acid | increases expression | 2 |
| Rosiglitazone | affects expression, affects cotreatment, increases expression | 2 |
| Troglitazone | decreases reaction, affects cotreatment, increases expression | 2 |
| Acetaminophen | decreases expression, increases expression | 2 |
| Carbon Tetrachloride | increases expression | 2 |
| Cisplatin | affects cotreatment, increases expression | 2 |
| Dexamethasone | increases expression, increases reaction | 2 |
| Estradiol | increases expression, affects cotreatment | 2 |
| Tobacco Smoke Pollution | increases expression | 2 |
| Tretinoin | decreases expression, increases expression | 2 |
| Valproic Acid | affects cotreatment, increases expression | 2 |
| Aflatoxin B1 | affects expression, increases expression, increases methylation | 2 |
| tert-Butylhydroperoxide | affects cotreatment, increases expression, decreases reaction, decreases expression | 2 |
| FR900359 | increases phosphorylation | 1 |
| methylmercuric chloride | increases expression | 1 |
| bisphenol A | increases expression | 1 |
| lead acetate | increases expression | 1 |
| methylselenic acid | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | increases expression, affects cotreatment, affects localization | 1 |
| pyrithione zinc | increases expression | 1 |
ChEMBL screening assays
13 unique, capped per target: 13 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3626191 | Binding | Binding affinity to CRYAB (unknown origin) assessed as reduction in CRYAB-VEGFA protein interaction | Rational design of proteinprotein interaction inhibitors — Medchemcomm |
Cellosaurus cell lines
5 cell lines: 5 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C9HF | UKEi001-A-1 | Induced pluripotent stem cell | Female |
| CVCL_D6JS | UMCUi001-A | Induced pluripotent stem cell | Female |
| CVCL_D6JT | UMCUi002-A | Induced pluripotent stem cell | Male |
| CVCL_D6JU | UMCUi003-A | Induced pluripotent stem cell | Male |
| CVCL_D6NU | ICSSUi004-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
158 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00374465 | PHASE4 | UNKNOWN | Therapy With Verapamil or Carvedilol in Chronic Heart Failure |
| NCT01293903 | PHASE4 | COMPLETED | Study of Qiliqiangxin Capsule to Treat Dilated Cardiomyopathy |
| NCT01557140 | PHASE4 | COMPLETED | A Randomized Trial of Carvedilol in Chronic Chagas Cardiomyopathy |
| NCT01917149 | PHASE4 | COMPLETED | Supramaximal Titrated Inhibition of RAAS in Dilated Cardiomyopathy |
| NCT02115581 | PHASE4 | COMPLETED | Coenzyme Q10 Supplementation in Children With Idiopathic Dilated Cardiomyopathy |
| NCT06236022 | PHASE4 | RECRUITING | The Effects of Sirolimus in Patients With Dilated Cardiomyopathy Infected With Kaposi Sarcoma-associated Virus |
| NCT00333827 | PHASE3 | COMPLETED | Cell Therapy In Dilated Cardiomyopathy |
| NCT00505154 | PHASE3 | COMPLETED | Effect of Rosuvastatin on Left Ventricular Remodeling |
| NCT01223703 | PHASE3 | COMPLETED | PUFAs and Left Ventricular Function in Heart Failure |
| NCT01583114 | PHASE3 | TERMINATED | PREclinical Mutation CARriers From Families With DIlated Cardiomyopathy and ACE Inhibitors |
| NCT01914081 | PHASE3 | UNKNOWN | Resveratrol: A Potential Anti- Remodeling Agent in Heart Failure, From Bench to Bedside |
| NCT02989181 | PHASE3 | UNKNOWN | Continues Positive Airway Pressure Treatment for Patients With Dilated Cardiomyopathy and Obstructive Sleep Apnea |
| NCT03439514 | PHASE3 | TERMINATED | A Study of ARRY-371797 (PF-07265803) in Patients With Symptomatic Dilated Cardiomyopathy Due to a Lamin A/C Gene Mutation |
| NCT05237323 | PHASE3 | COMPLETED | Micophenolate Mofetil Versus Azathioprine in Myocarditis |
| NCT05849766 | PHASE3 | COMPLETED | Effect of Dapagliflozin on Cardiac Structure, Function and Secondary Mitral Regurgitation in Patients with Left Ventricle Dysfunction |
| NCT06250257 | PHASE3 | RECRUITING | Bromocriptine in Dilated Cardiomyopathy Among Women of Reproductive Age |
| NCT00629018 | PHASE2 | COMPLETED | Safety and Efficacy Study of Stem Cell Transplantation to Treat Dilated Cardiomyopathy |
| NCT00629096 | PHASE2 | COMPLETED | Intracoronary Infusion of Autologous Bone Marrow Cells for Treatment of Idiopathic Dilated Cardiomyopathy |
| NCT00765518 | PHASE2 | COMPLETED | Use of Ixmyelocel-T (Formerly Cardiac Repair Cell [CRC] Treatment) in Patients With Heart Failure Due to Dilated Cardiomyopathy (IMPACT-DCM) |
| NCT00847964 | PHASE2 | COMPLETED | Safety and Feasibility of Algisyl-LVR™ as a Method of Left Ventricular Restoration in Patients With DCM Undergoing Open-heart Surgery |
| NCT01020968 | PHASE2 | COMPLETED | Use of Ixmyelocel-T (Formerly Catheter-based Cardiac Repair Cell [CRC]) Treatment in Patients With Heart Failure Due to Dilated Cardiomyopathy |
| NCT01302171 | PHASE2 | COMPLETED | Bone Marrow Derived Adult Stem Cells for Dilated Cardiomyopathy |
| NCT01350310 | PHASE2 | COMPLETED | Safety and Efficacy Study of Intramyocardial Stem Cell Therapy in Patients With Dilated Cardiomyopathy |
| NCT02133911 | PHASE2 | COMPLETED | A Pilot Trial of Ranolazine to Treat Patients With Dilated Cardiomyopathy |
| NCT03071653 | PHASE2 | SUSPENDED | Left Cardiac Sympathetic Denervation for Cardiomyopathy Feasibility Pilot Study |
| NCT03572660 | PHASE2 | ACTIVE_NOT_RECRUITING | Use of Bone Marrow Derived Stem Cell and G-CSF With Circulatory Assistance in the Treatment of DCM |
| NCT03775070 | PHASE2 | COMPLETED | Simvastatin Therapy in Patients With Dilated Cardiomyopathy. |
| NCT04405804 | PHASE2 | UNKNOWN | Early Administration of Ivabradine in Children With Heart Failure |
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Related Atlas pages
- Associated diseases: fatal infantile hypertonic myofibrillar myopathy, myofibrillar myopathy 2, cataract 16 multiple types, dilated cardiomyopathy 1II, familial isolated dilated cardiomyopathy, early-onset lamellar cataract, early-onset nuclear cataract, early-onset posterior polar cataract
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cardiomyopathy, cardiomyopathy, familial restrictive, 1, cataract 16 multiple types, congestive heart failure, dilated cardiomyopathy 1II, early-onset lamellar cataract, early-onset nuclear cataract, early-onset posterior polar cataract, familial hypertrophic cardiomyopathy, fatal infantile hypertonic myofibrillar myopathy, myofibrillar myopathy 2, xeroderma pigmentosum group D