CSE1L-DT

Summary

CSE1L-DT (CSE1L divergent transcript, HGNC:51232) is a long non-coding RNA gene on chromosome 20q13.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51232
Approved symbol	CSE1L-DT
Name	CSE1L divergent transcript
Location	20q13.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227431
Ensembl biotype	lncRNA
Entrez	102723483
RNAcentral	URS000075B9BD — lncRNA, 568 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000417781, ENST00000428190, ENST00000656931, ENST00000792803, ENST00000792804, ENST00000792805

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417781 — 4 exons

Exon	Start	End
ENSE00001618374	49043150	49043372
ENSE00004175063	49045860	49046185
ENSE00004175065	49017207	49017512
ENSE00004175066	49040382	49040610

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 84.41.

FANTOM5 (CAGE): breadth broad, TPM avg 1.0856 / max 17.9404, expressed in 568 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
187715	0.7291	356
187714	0.3565	209

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.41	gold quality
right testis	UBERON:0004534	83.28	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.84	gold quality
left testis	UBERON:0004533	82.81	gold quality
testis	UBERON:0000473	82.28	gold quality
cortical plate	UBERON:0005343	75.56	gold quality
ganglionic eminence	UBERON:0004023	73.64	gold quality
hindlimb stylopod muscle	UBERON:0004252	68.94	gold quality
blood	UBERON:0000178	62.57	gold quality
muscle tissue	UBERON:0002385	62.52	gold quality
monocyte	CL:0000576	61.26	gold quality
stromal cell of endometrium	CL:0002255	61.05	gold quality
placenta	UBERON:0001987	59.14	gold quality
lymph node	UBERON:0000029	58.38	gold quality
bone marrow	UBERON:0002371	57.94	gold quality
body of pancreas	UBERON:0001150	57.65	gold quality
prefrontal cortex	UBERON:0000451	57.24	gold quality
pancreas	UBERON:0001264	57.22	gold quality
primary visual cortex	UBERON:0002436	56.88	gold quality
vermiform appendix	UBERON:0001154	56.83	gold quality
liver	UBERON:0002107	56.70	gold quality
gall bladder	UBERON:0002110	56.21	gold quality
duodenum	UBERON:0002114	56.19	gold quality
right coronary artery	UBERON:0001625	56.18	gold quality
right adrenal gland cortex	UBERON:0035827	55.61	gold quality
adult mammalian kidney	UBERON:0000082	55.12	gold quality
islet of Langerhans	UBERON:0000006	54.85	gold quality
right lobe of liver	UBERON:0001114	54.84	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.69	gold quality
mucosa of transverse colon	UBERON:0004991	54.61	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.