CSGALNACT2-DT

Summary

CSGALNACT2-DT (CSGALNACT2 divergent transcript, HGNC:55174) is a long non-coding RNA gene on chromosome 10q11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55174
Approved symbol	CSGALNACT2-DT
Name	CSGALNACT2 divergent transcript
Location	10q11.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000273008
Ensembl biotype	lncRNA
Entrez	118568825
RNAcentral	URS00026A2369 — lncRNA, 1570 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000609407, ENST00000796738

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000609407 — 1 exons

Exon	Start	End
ENSE00003705074	43136824	43138334

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 82.99.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 1.9690 / max 34.2600, expressed in 1005 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
109156	1.4613	819
109155	0.5077	217

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.99	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.45	gold quality
bone marrow cell	CL:0002092	64.96	silver quality
right uterine tube	UBERON:0001302	64.07	gold quality
cortical plate	UBERON:0005343	64.02	gold quality
pituitary gland	UBERON:0000007	63.71	gold quality
granulocyte	CL:0000094	63.61	gold quality
right hemisphere of cerebellum	UBERON:0014890	63.51	gold quality
cerebellar hemisphere	UBERON:0002245	63.25	gold quality
cerebellar cortex	UBERON:0002129	63.21	gold quality
cerebellum	UBERON:0002037	63.10	gold quality
ascending aorta	UBERON:0001496	62.90	gold quality
thoracic aorta	UBERON:0001515	62.90	gold quality
myometrium	UBERON:0001296	62.89	gold quality
body of uterus	UBERON:0009853	62.78	gold quality
bone marrow	UBERON:0002371	62.64	gold quality
descending thoracic aorta	UBERON:0002345	62.61	gold quality
adenohypophysis	UBERON:0002196	62.25	gold quality
popliteal artery	UBERON:0002250	62.25	gold quality
tibial artery	UBERON:0007610	62.23	gold quality
left coronary artery	UBERON:0001626	61.81	gold quality
lower esophagus muscularis layer	UBERON:0035833	61.33	gold quality
lower esophagus	UBERON:0013473	61.24	gold quality
ganglionic eminence	UBERON:0004023	60.69	gold quality
endocervix	UBERON:0000458	60.49	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	60.09	gold quality
ventricular zone	UBERON:0003053	60.07	gold quality
right coronary artery	UBERON:0001625	60.04	gold quality
right lung	UBERON:0002167	59.85	gold quality
stromal cell of endometrium	CL:0002255	59.79	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.25

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.