CSRP1
gene geneOn this page
Also known as CSRPD1S181E
Summary
CSRP1 (cysteine and glycine rich protein 1, HGNC:2469) is a protein-coding gene on chromosome 1q32.1, encoding Cysteine and glycine-rich protein 1 (P21291). Could play a role in neuronal development.
This gene encodes a member of the cysteine-rich protein (CSRP) family. This gene family includes a group of LIM domain proteins, which may be involved in regulatory processes important for development and cellular differentiation. The LIM/double zinc-finger motif found in this gene product occurs in proteins with critical functions in gene regulation, cell growth, and somatic differentiation. Alternatively spliced transcript variants have been described.
Source: NCBI Gene 1465 — RefSeq curated summary.
At a glance
- Gene–disease (curated): congenital heart disease (Disputed, ClinGen)
- Clinical variants (ClinVar): 51 total
- Druggable target: yes
- MANE Select transcript:
NM_004078
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2469 |
| Approved symbol | CSRP1 |
| Name | cysteine and glycine rich protein 1 |
| Location | 1q32.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CSRP, D1S181E |
| Ensembl gene | ENSG00000159176 |
| Ensembl biotype | protein_coding |
| OMIM | 123876 |
| Entrez | 1465 |
Gene structure
Transcript identifiers
Ensembl transcripts: 31 — 20 protein_coding, 6 retained_intron, 5 protein_coding_CDS_not_defined
ENST00000340006, ENST00000367306, ENST00000458271, ENST00000471596, ENST00000481851, ENST00000524951, ENST00000526256, ENST00000526317, ENST00000526723, ENST00000527573, ENST00000527662, ENST00000529975, ENST00000530120, ENST00000531916, ENST00000532313, ENST00000532460, ENST00000533188, ENST00000533402, ENST00000533432, ENST00000905417, ENST00000905418, ENST00000905419, ENST00000905420, ENST00000905421, ENST00000905422, ENST00000905423, ENST00000905424, ENST00000905425, ENST00000905426, ENST00000915182, ENST00000967210
RefSeq mRNA: 4 — MANE Select: NM_004078
NM_001193570, NM_001193571, NM_001193572, NM_004078
CCDS: CCDS1413
Canonical transcript exons
ENST00000340006 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002195803 | 201507070 | 201507123 |
| ENSE00003479163 | 201490176 | 201490344 |
| ENSE00003600334 | 201488855 | 201488984 |
| ENSE00003604532 | 201485283 | 201485376 |
| ENSE00003653306 | 201496192 | 201496304 |
| ENSE00003894071 | 201483530 | 201484789 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 99.87.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 187.6560 / max 3603.0848, expressed in 1776 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 16673 | 184.1318 | 1772 |
| 16674 | 3.0375 | 1367 |
| 16671 | 0.4866 | 271 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| popliteal artery | UBERON:0002250 | 99.87 | gold quality |
| tibial artery | UBERON:0007610 | 99.87 | gold quality |
| lower esophagus | UBERON:0013473 | 99.85 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 99.85 | gold quality |
| right coronary artery | UBERON:0001625 | 99.84 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 99.84 | gold quality |
| saphenous vein | UBERON:0007318 | 99.82 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 99.82 | gold quality |
| body of uterus | UBERON:0009853 | 99.80 | gold quality |
| aorta | UBERON:0000947 | 99.79 | gold quality |
| left uterine tube | UBERON:0001303 | 99.79 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.78 | gold quality |
| cauda epididymis | UBERON:0004360 | 99.74 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 99.73 | gold quality |
| left coronary artery | UBERON:0001626 | 99.73 | gold quality |
| seminal vesicle | UBERON:0000998 | 99.71 | gold quality |
| ascending aorta | UBERON:0001496 | 99.70 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.70 | gold quality |
| coronary artery | UBERON:0001621 | 99.70 | gold quality |
| blood vessel layer | UBERON:0004797 | 99.70 | gold quality |
| myometrium | UBERON:0001296 | 99.65 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.63 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 99.63 | gold quality |
| prostate gland | UBERON:0002367 | 99.55 | gold quality |
| tibial nerve | UBERON:0001323 | 99.51 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 99.48 | gold quality |
| endocervix | UBERON:0000458 | 99.45 | gold quality |
| medial globus pallidus | UBERON:0002477 | 99.44 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 99.42 | gold quality |
| globus pallidus | UBERON:0001875 | 99.39 | gold quality |
Single-cell (SCXA)
Detected in 9 experiment(s), a significant marker in 9.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-10287 | yes | 84.76 |
| E-HCAD-1 | yes | 40.09 |
| E-MTAB-8410 | yes | 33.24 |
| E-GEOD-135922 | yes | 30.63 |
| E-HCAD-11 | yes | 20.71 |
| E-GEOD-84465 | yes | 12.64 |
| E-CURD-46 | yes | 8.12 |
| E-HCAD-9 | yes | 5.15 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CEBPA, CEBPB, HNF1A, MTF1, REL, SRF, STAT3
miRNA regulators (miRDB)
74 targeting CSRP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-3919 | 99.87 | 69.45 | 2489 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-3151-5P | 99.86 | 63.83 | 1069 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-26A-5P | 99.78 | 73.52 | 2303 |
| HSA-MIR-26B-5P | 99.78 | 73.51 | 2305 |
| HSA-MIR-6766-5P | 99.68 | 67.70 | 2325 |
| HSA-MIR-3934-5P | 99.67 | 64.04 | 846 |
| HSA-MIR-378A-5P | 99.65 | 66.33 | 1311 |
| HSA-MIR-4516 | 99.61 | 67.78 | 3390 |
| HSA-MIR-4649-3P | 99.56 | 66.90 | 1783 |
| HSA-MIR-4472 | 99.56 | 66.08 | 1478 |
| HSA-MIR-4753-5P | 99.54 | 68.51 | 1356 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-3606-5P | 99.31 | 69.67 | 1168 |
| HSA-MIR-491-5P | 99.13 | 65.98 | 1468 |
| HSA-MIR-1253 | 99.12 | 67.08 | 1688 |
| HSA-MIR-4254 | 99.11 | 65.15 | 1315 |
| HSA-MIR-4763-3P | 99.10 | 67.83 | 2649 |
| HSA-MIR-4651 | 99.06 | 67.57 | 2002 |
| HSA-MIR-6749-3P | 99.00 | 65.73 | 1443 |
Literature-anchored findings (GeneRIF, showing 7)
- Aberrant methylation of CSRP1 is associated with hepatocellular carcinoma (PMID:17341888)
- Hypomethylation of wingless-related MMTV integration site 5A (WNT5A), S100 calcium-binding protein P (S100P) and cysteine-rich protein 1(CRIP1) was confirmed in the cancer cells by bisulfite sequencing. (PMID:17486081)
- CRP1 expression is regulated by UVB in human keratinocytes, suggesting a role for CRP1 in the phototoxic responses of human skin. (PMID:20415737)
- Results show that CRP1 is a novel TGF-beta1 regulated protein that is expressed in fibrotic lesions and may be relevant in idiopathic pulmonary fibrosis. (PMID:21882188)
- A protein encoded by this locus was found to be differentially expressed in postmortem brains from patients with atypical frontotemporal lobar degeneration. (PMID:22360420)
- Plasma ADMA is a useful parameter for predicting subclinical atherosclerosis, whereas homocysteine and hsCRP are not (PMID:24357092)
- CSRP1 Promotes Colon Adenocarcinoma Growth and Serves as an Independent Risk Biomarker for Worse Prognosis. (PMID:37113556)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | csrp1a | ENSDARG00000006603 |
| danio_rerio | csrp1b | ENSDARG00000030980 |
| mus_musculus | Csrp1 | ENSMUSG00000026421 |
| rattus_norvegicus | Csrp1 | ENSRNOG00000008937 |
| drosophila_melanogaster | Mlp84B | FBGN0014863 |
| drosophila_melanogaster | Mlp60A | FBGN0259209 |
| caenorhabditis_elegans | WBGENE00003375 |
Paralogs (2): CSRP3 (ENSG00000129170), CSRP2 (ENSG00000175183)
Protein
Protein identifiers
Cysteine and glycine-rich protein 1 — P21291 (reviewed: P21291)
Alternative names: Cysteine-rich protein 1, Epididymis luminal protein 141
All UniProt accessions (7): P21291, A0A087X134, A0A384P5K2, B4DY28, E9PND2, E9PP21, E9PS42
UniProt curated annotations — full annotation on UniProt →
Function. Could play a role in neuronal development.
Subunit / interactions. Interacts with ASCC1; ASCC2 and TRIP4.
Subcellular location. Nucleus.
RefSeq proteins (4): NP_001180499, NP_001180500, NP_001180501, NP_004069* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001781 | Znf_LIM | Domain |
Pfam: PF00412
UniProt features (14 total): modified residue 7, domain 2, chain 1, cross-link 1, sequence variant 1, sequence conflict 1, short sequence motif 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P21291-F1 | 72.49 | 0.02 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (8): 192, 91, 81, 84, 112, 131, 137, 161
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-5660489 | MTF1 activates gene expression |
MSigDB gene sets: 255 (showing top):
GOBP_MUSCLE_TISSUE_DEVELOPMENT, ENK_UV_RESPONSE_KERATINOCYTE_UP, GOBP_PLATELET_ACTIVATION, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_SARCOMERE_ORGANIZATION, BOYLAN_MULTIPLE_MYELOMA_D_DN, SRF_Q5_01, GOBP_WOUND_HEALING, GOBP_CELL_CELL_ADHESION, GOBP_CELLULAR_COMPONENT_ASSEMBLY_INVOLVED_IN_MORPHOGENESIS, GOBP_MUSCLE_STRUCTURE_DEVELOPMENT, SASAI_RESISTANCE_TO_NEOPLASTIC_TRANSFROMATION, RUTELLA_RESPONSE_TO_CSF2RB_AND_IL4_UP, BOYLAN_MULTIPLE_MYELOMA_D_CLUSTER_DN
GO Biological Process (3): sarcomere organization (GO:0045214), muscle tissue development (GO:0060537), platelet aggregation (GO:0070527)
GO Molecular Function (6): RNA binding (GO:0003723), zinc ion binding (GO:0008270), structural constituent of muscle (GO:0008307), actinin binding (GO:0042805), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (5): nucleus (GO:0005634), cytoplasm (GO:0005737), focal adhesion (GO:0005925), Z disc (GO:0030018), extracellular exosome (GO:0070062)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Response to metal ions | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| myofibril assembly | 1 |
| actomyosin structure organization | 1 |
| tissue development | 1 |
| platelet activation | 1 |
| homotypic cell-cell adhesion | 1 |
| nucleic acid binding | 1 |
| transition metal ion binding | 1 |
| structural molecule activity | 1 |
| cytoskeletal protein binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cell-substrate junction | 1 |
| I band | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
1070 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CSRP1 | MED14 | O60244 | 718 |
| CSRP1 | LMO1 | P25800 | 717 |
| CSRP1 | ZYX | Q15942 | 656 |
| CSRP1 | MYOG | P15173 | 633 |
| CSRP1 | SPARC | P09486 | 612 |
| CSRP1 | LMO2 | P25791 | 558 |
| CSRP1 | ISL1 | P20663 | 507 |
| CSRP1 | ENO1 | P06733 | 474 |
| CSRP1 | ANXA2 | P07355 | 448 |
| CSRP1 | AHNAK | Q09666 | 446 |
| CSRP1 | DPYSL2 | Q16555 | 442 |
| CSRP1 | SH3BGRL3 | Q9H299 | 437 |
| CSRP1 | GAPDH | P00354 | 437 |
| CSRP1 | ASB9 | Q96DX5 | 435 |
| CSRP1 | S100A6 | P06703 | 423 |
IntAct
36 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CSRP1 | CA9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CSRP1 | REEP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EGFR | CSRP1 | psi-mi:“MI:0915”(physical association) | 0.550 |
| GRB2 | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.530 |
| CFTR | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| CSRP1 | ESR1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| E2F3 | psi-mi:“MI:0914”(association) | 0.350 | |
| SPHK1 | MYO1C | psi-mi:“MI:0914”(association) | 0.350 |
| BCAR1 | PSMD11 | psi-mi:“MI:0914”(association) | 0.350 |
| BCAR1 | MYO1C | psi-mi:“MI:0914”(association) | 0.350 |
| BANF1 | psi-mi:“MI:0914”(association) | 0.350 | |
| PTCHD1 | DDX3X | psi-mi:“MI:0914”(association) | 0.350 |
| PIK3C2A | psi-mi:“MI:0914”(association) | 0.350 | |
| MAPT | SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
| HSPA8 | AGPS | psi-mi:“MI:0914”(association) | 0.350 |
| B3GNT2 | PDLIM1 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC11A2 | UBXN8 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC39A12 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| CREB1 | ACOT7 | psi-mi:“MI:0914”(association) | 0.350 |
| CNTRL | ANKRD28 | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (82): CSRP1 (Affinity Capture-MS), CSRP1 (Affinity Capture-MS), CSRP1 (Affinity Capture-MS), CSRP1 (Co-fractionation), CSRP1 (Co-fractionation), CSRP1 (Co-fractionation), CSRP1 (Co-fractionation), CSRP1 (Co-fractionation), FUBP3 (Co-fractionation), TALDO1 (Co-fractionation), CSRP1 (Two-hybrid), CSRP1 (Proximity Label-MS), CSRP1 (Affinity Capture-Western), CSRP1 (Affinity Capture-Western), CSRP1 (Affinity Capture-Western)
ESM2 similar proteins: O00151, O04193, O35115, O70400, O70433, O80839, P21291, P29675, P36201, P47875, P50238, P50461, P50462, P50463, P50464, P52943, P52944, P53777, P63254, P63255, P67966, P67967, P97315, Q0VFX8, Q14192, Q16527, Q1ECF5, Q1LZA7, Q24400, Q2KI95, Q3MHY1, Q4KM31, Q4U0T9, Q500W4, Q56K04, Q5E9E1, Q5R7Y1, Q5RCT4, Q5RGJ5, Q5ZLR4
Diamond homologs: B0KYV5, D4A1F2, F1LR10, F1MF74, F1QH17, F1QWK4, F1RA39, F6QZ15, G3MWR8, G5EF51, O04193, O60952, O77506, O80839, O94851, P21291, P29675, P36201, P47875, P50460, P50461, P50462, P50463, P52943, P53777, P67966, P67967, P97314, P97315, Q05158, Q0E908, Q0VFX8, Q14847, Q16527, Q1ECF5, Q1LZA7, Q32LE9, Q3B7M5, Q3MHY1, Q4KM31
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CEBPB | “up-regulates quantity by expression” | CSRP1 | “transcriptional regulation” |
| REL | “up-regulates quantity by expression” | CSRP1 | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 33 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Clathrin-mediated endocytosis | 5 | 15.2× | 6e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
51 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 36 |
| Likely benign | 1 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1037 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:201485278:CCCA:C | donor_loss | 1.0000 |
| 1:201485280:CA:C | donor_loss | 1.0000 |
| 1:201485372:CAGGA:C | acceptor_gain | 1.0000 |
| 1:201485373:AGGA:A | acceptor_gain | 1.0000 |
| 1:201485374:GGA:G | acceptor_gain | 1.0000 |
| 1:201485375:GA:G | acceptor_gain | 1.0000 |
| 1:201485375:GACTA:G | acceptor_loss | 1.0000 |
| 1:201485376:AC:A | acceptor_loss | 1.0000 |
| 1:201485377:C:CC | acceptor_gain | 1.0000 |
| 1:201485377:C:T | acceptor_loss | 1.0000 |
| 1:201485378:T:C | acceptor_loss | 1.0000 |
| 1:201485382:C:CT | acceptor_gain | 1.0000 |
| 1:201486938:A:AC | donor_gain | 1.0000 |
| 1:201488985:C:CC | acceptor_gain | 1.0000 |
| 1:201490169:TAC:T | donor_loss | 1.0000 |
| 1:201490170:A:AC | donor_gain | 1.0000 |
| 1:201490170:AC:A | donor_loss | 1.0000 |
| 1:201490171:C:CC | donor_gain | 1.0000 |
| 1:201490171:CTCA:C | donor_gain | 1.0000 |
| 1:201490172:TCA:T | donor_loss | 1.0000 |
| 1:201490173:CA:C | donor_loss | 1.0000 |
| 1:201490174:A:AC | donor_gain | 1.0000 |
| 1:201490174:ACT:A | donor_gain | 1.0000 |
| 1:201490174:ACTC:A | donor_gain | 1.0000 |
| 1:201490175:C:CT | donor_gain | 1.0000 |
| 1:201490175:CT:C | donor_gain | 1.0000 |
| 1:201490175:CTC:C | donor_gain | 1.0000 |
| 1:201490175:CTCC:C | donor_gain | 1.0000 |
| 1:201490175:CTCCT:C | donor_gain | 1.0000 |
| 1:201490342:CCA:C | acceptor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000037925 (1:201492219 T>C), RS1000091437 (1:201500439 G>A), RS1000106423 (1:201486128 G>T), RS1000191763 (1:201494026 G>A), RS1000388937 (1:201491948 T>C), RS1000470467 (1:201500213 G>A), RS1000525977 (1:201508166 C>T), RS1000580051 (1:201508429 G>A), RS1000641714 (1:201505934 A>C), RS1000737434 (1:201502024 T>G), RS1000802074 (1:201503341 T>C), RS1001183808 (1:201502655 C>A,T), RS1001291431 (1:201497430 G>A), RS1001445531 (1:201491217 G>A), RS1001635076 (1:201502956 G>A)
Disease associations
OMIM: gene MIM:123876 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| congenital heart disease | Disputed Evidence | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| congenital heart disease | Disputed | AD |
Mondo (1): congenital heart disease (MONDO:0005453)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006330 | Heart Defects, Congenital | C14.240.400; C14.280.400; C16.131.240.400 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4295728 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
79 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, decreases methylation | 6 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| bisphenol A | affects expression, decreases expression | 2 |
| sodium arsenite | increases expression | 2 |
| cobaltous chloride | decreases expression | 2 |
| Air Pollutants | decreases expression, increases abundance, increases expression, affects cotreatment | 2 |
| Cisplatin | affects cotreatment, decreases expression, increases expression | 2 |
| Doxorubicin | affects expression, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Silver | increases expression | 2 |
| Smoke | decreases expression, increases expression | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| Tretinoin | increases expression | 2 |
| Particulate Matter | affects cotreatment, increases abundance, increases expression, decreases expression | 2 |
| FR900359 | affects phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| TAK-243 | increases sumoylation | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| alpha-pinene | affects cotreatment, decreases expression, increases abundance | 1 |
| propionaldehyde | increases expression | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| lead acetate | increases expression | 1 |
| methylselenic acid | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, decreases expression | 1 |
| sulforaphane | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| artenimol | affects binding | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4118648 | Binding | Binding affinity to CSRP1 in human NCI-H23 cells at 1 uM by mass spectrometry based pull down assay | Studies of TAK1-centered polypharmacology with novel covalent TAK1 inhibitors. — Bioorg Med Chem |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1PH | Abcam HeLa CSRP1 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00668824 | PHASE4 | UNKNOWN | Improved Diagnosis of Congenital Heart Disease by Magnetic Resonance Imaging Using Vasovist |
| NCT01368705 | PHASE4 | COMPLETED | Nitrogen Balance in Infants After Post Cardiothoracic Surgery |
| NCT01619982 | PHASE4 | COMPLETED | Pre-operative Prophylaxis With Vancomycin and Cefazolin in Pediatric Cardiovascular Surgery Patients |
| NCT02122679 | PHASE4 | WITHDRAWN | Tranexamic Acid Effect on Platelet Aggregation Following Infant Cardiopulmonary Bypass |
| NCT02527811 | PHASE4 | UNKNOWN | Ulinastatin Injection in in Pediatric Patients Undergoing Open Heart Surgery |
| NCT03014700 | PHASE4 | COMPLETED | Fibrinogen Concentrate vs Cryoprecipitate |
| NCT03408340 | PHASE4 | TERMINATED | Paravertebral Nerve Blocks in Neonates |
| NCT03630796 | PHASE4 | UNKNOWN | Effect of Sevoflurane in Postoperative Troponin I Levels in Children Undergoing Congenital Heart Defects Surgery |
| NCT03667703 | PHASE4 | COMPLETED | Stress Ulcer Prophylaxis Versus Placebo in Critically Ill Infants With Congenital Heart Disease |
| NCT04453761 | PHASE4 | UNKNOWN | Thiamine Influenced on Substrate Energy Effectiveness in Indonesian Children Undergoing Cardiopulmonary Bypass |
| NCT06668389 | PHASE4 | RECRUITING | Sodium-Glucose Cotransporter 2 Inhibitors for Repaired Tetralogy of Fallot Patients for Enhancement of Cardio-Pulmonary Status Trial |
| NCT07499154 | PHASE4 | NOT_YET_RECRUITING | Perioperative Lidocaine for Lung Protection in Infants Undergoing Cardiac Surgery |
| NCT00000470 | PHASE3 | COMPLETED | Infant Heart Surgery: Central Nervous System Sequelae of Circulatory Arrest |
| NCT00000494 | PHASE3 | COMPLETED | Management of Patent Ductus in Premature Infants |
| NCT01134302 | PHASE3 | UNKNOWN | Hybrid Versus Norwood Management Strategies in Infants Undergoing Single Ventricle Palliation |
| NCT01607983 | PHASE3 | WITHDRAWN | Effects of Pulmonary Vasodilation Upon VA Coupling in Fontan Patients |
| NCT01662011 | PHASE3 | UNKNOWN | Application of Neurally Adjusted Ventilatory Assist to Children After Congenital Cardiac Surgery |
| NCT02320669 | PHASE3 | COMPLETED | Phase 3 Triiodothyronine Supplementation for Infants After Cardiopulmonary Bypass |
| NCT02615262 | PHASE3 | COMPLETED | Intraoperative Dexamethasone in Pediatric Cardiac Surgery |
| NCT03153137 | PHASE3 | COMPLETED | Clinical Study Assessing the Efficacy and Safety of Macitentan in Fontan-palliated Subjects |
| NCT03154476 | PHASE3 | COMPLETED | Role of Sildenafil for Fontan Associated Liver Disease (SiFALD) Study |
| NCT04536194 | PHASE3 | COMPLETED | Dopamine Versus Norepinephrine Under General Anesthesia |
| NCT04702373 | PHASE3 | ACTIVE_NOT_RECRUITING | Training in Exercise Activities and Motion for Growth (TEAM 4 Growth) RCT |
| NCT05049590 | PHASE3 | COMPLETED | Acute Normovolemic Hemodilution in Complex Cardiac Surgery |
| NCT06406517 | PHASE3 | UNKNOWN | Comparative Effectiveness of Gadopiclenol for Evaluation of Adult Congenital Heart Anatomy and Hemodynamics |
| NCT06693674 | PHASE3 | RECRUITING | Effect of Sacubitril-Valsartan on Cardiac Structure and Function |
| NCT06955260 | PHASE3 | NOT_YET_RECRUITING | SGLT2 Inhibition With Empagliflozin in Fontan Circulatory Failure |
| NCT00115375 | PHASE2 | COMPLETED | Platelet Aggregation Inhibition in Children on Clopidogrel (PICOLO) |
| NCT00350220 | PHASE2 | COMPLETED | Transfusion Strategies in Pediatric Cardiothoracic Surgery |
| NCT00374088 | PHASE2 | COMPLETED | N-Acetylcysteine in Neonatal Congenital Heart Surgery (INACT Study) |
| NCT00538785 | PHASE2 | COMPLETED | A Study to Evaluate MEDI-524 In Children With Hemodynamically Significant Congenital Heart Disease |
| NCT00770705 | PHASE2 | WITHDRAWN | Parenteral Phenoxybenzamine During Congenital Heart Disease Surgery |
| NCT00919945 | PHASE2 | TERMINATED | Impact of Early Enteral Feeding on Splanchnic Blood Flow After Surgery for Critical Heart Disease in the Newborn |
| NCT01063712 | PHASE2 | COMPLETED | Safety and Effectiveness of the Device Nit-Occlud® PDA-R |
| NCT01069510 | PHASE2 | COMPLETED | Spironolactone in Adult Congenital Heart Disease |
| NCT01189981 | PHASE2 | COMPLETED | Effect of eHealth Encouragements to Intensive Exercise in Adolescents With Congenital Heart Disease |
| NCT01330433 | PHASE2 | COMPLETED | Effects of CoSeal on Bleeding & Adhesions in Pediatric Heart Surgery |
| NCT01662037 | PHASE2 | COMPLETED | Bosentan Therapy in Children With Functional Single Ventricle |
| NCT01668264 | PHASE2 | UNKNOWN | Imaging Assessment of Diastolic Function |
| NCT01827059 | PHASE2 | UNKNOWN | Bosentan In Exercise Induced Pulmonary Arterial Hypertension in CongenitaL Heart diseasE |
Related Atlas pages
- Associated diseases: congenital heart disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital heart disease