CSRP3-AS1

Summary

CSRP3-AS1 (CSRP3 and E2F8 antisense RNA 1, HGNC:54183) is a long non-coding RNA gene on chromosome 11p15.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54183
Approved symbol	CSRP3-AS1
Name	CSRP3 and E2F8 antisense RNA 1
Location	11p15.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255308
Ensembl biotype	lncRNA
Entrez	105376580
RNAcentral	URS00026A1BB3 — lncRNA, 3798 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000527978, ENST00000529082, ENST00000718486, ENST00000789312, ENST00000789313, ENST00000789314, ENST00000789315, ENST00000789316, ENST00000789317, ENST00000850663

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000527978 — 7 exons

Exon	Start	End
ENSE00002140867	19196775	19196919
ENSE00002141107	19252245	19252291
ENSE00002168859	19224834	19224980
ENSE00004476228	19310632	19310726
ENSE00004476230	19281250	19281450
ENSE00004476231	19291863	19292029
ENSE00004476232	19308190	19308361

Expression profiles

Bgee: expression breadth ubiquitous, 108 present calls, max score 83.54.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0384 / max 27.9699, expressed in 16 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
113362	0.0170	8
113363	0.0153	7
113364	0.0060	2

Top tissues by expression

108 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.54	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	77.60	gold quality
apex of heart	UBERON:0002098	75.93	gold quality
hindlimb stylopod muscle	UBERON:0004252	71.02	gold quality
heart left ventricle	UBERON:0002084	66.58	gold quality
skeletal muscle tissue	UBERON:0001134	66.30	gold quality
heart	UBERON:0000948	65.65	gold quality
right atrium auricular region	UBERON:0006631	63.45	gold quality
bone marrow cell	CL:0002092	62.84	silver quality
sural nerve	UBERON:0015488	61.98	silver quality
endometrium	UBERON:0001295	61.23	gold quality
mucosa of transverse colon	UBERON:0004991	60.92	gold quality
bone marrow	UBERON:0002371	60.03	gold quality
muscle of leg	UBERON:0001383	59.25	gold quality
tonsil	UBERON:0002372	58.78	gold quality
liver	UBERON:0002107	57.79	gold quality
lymph node	UBERON:0000029	57.61	gold quality
gastrocnemius	UBERON:0001388	57.50	gold quality
monocyte	CL:0000576	57.16	gold quality
right uterine tube	UBERON:0001302	56.41	gold quality
fallopian tube	UBERON:0003889	56.05	gold quality
gall bladder	UBERON:0002110	55.64	gold quality
duodenum	UBERON:0002114	54.70	gold quality
islet of Langerhans	UBERON:0000006	54.68	gold quality
vermiform appendix	UBERON:0001154	51.71	gold quality
right lung	UBERON:0002167	51.70	gold quality
lung	UBERON:0002048	51.61	gold quality
rectum	UBERON:0001052	51.26	gold quality
blood	UBERON:0000178	50.61	gold quality
primary visual cortex	UBERON:0002436	49.97	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.04

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.