CSRP3
gene geneOn this page
Also known as CLPMLPCMD1M
Summary
CSRP3 (cysteine and glycine rich protein 3, HGNC:2472) is a protein-coding gene on chromosome 11p15.1, encoding Cysteine and glycine-rich protein 3 (P50461). Positive regulator of myogenesis.
This gene encodes a member of the CSRP family of LIM domain proteins, which may be involved in regulatory processes important for development and cellular differentiation. The LIM/double zinc-finger motif found in this protein is found in a group of proteins with critical functions in gene regulation, cell growth, and somatic differentiation. Mutations in this gene are thought to cause heritable forms of hypertrophic cardiomyopathy (HCM) and dilated cardiomyopathy (DCM) in humans. Alternatively spliced transcript variants with different 5’ UTR, but encoding the same protein, have been found for this gene.
Source: NCBI Gene 8048 — RefSeq curated summary.
At a glance
- Gene–disease (curated): hypertrophic cardiomyopathy (Definitive, ClinGen) — +4 more curated relationships
- GWAS associations: 9
- Clinical variants (ClinVar): 515 total — 23 pathogenic, 11 likely-pathogenic (top 6% of genes corpus-wide)
- GTEx eGene: eQTL in 8 tissues, sQTL in 3 (q < 0.05)
- Phenotypes (HPO): 25
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 1.31 (unconstrained)
- MANE Select transcript:
NM_003476
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2472 |
| Approved symbol | CSRP3 |
| Name | cysteine and glycine rich protein 3 |
| Location | 11p15.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CLP, MLP, CMD1M |
| Ensembl gene | ENSG00000129170 |
| Ensembl biotype | protein_coding |
| OMIM | 600824 |
| Entrez | 8048 |
Gene structure
Transcript identifiers
Ensembl transcripts: 42 — 41 protein_coding, 1 nonsense_mediated_decay
MANE Select: ENST00000265968
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2
ENST00000265968, ENST00000533783, ENST00000647990, ENST00000648719, ENST00000649235, ENST00000649842, ENST00000862857, ENST00000862858, ENST00000862859, ENST00000862860, ENST00000862861, ENST00000951069, ENST00000951070, ENST00000951071, ENST00000951072, ENST00000951073, ENST00000951074, ENST00000951075, ENST00001017228, ENST00001017229, ENST00001017230, ENST00001017231, ENST00001103587, ENST00001103588, ENST00001103589, ENST00001103590, ENST00001103591, ENST00001103592, ENST00001103593, ENST00001103594, ENST00001103595, ENST00001103596, ENST00001103597, ENST00001103598, ENST00001103599, ENST00001103600, ENST00001103601, ENST00001106018, ENST00001130743, ENST00001130744, ENST00001130745, ENST00001137301
RefSeq mRNA: 2 — MANE Select: NM_003476
NM_001369404, NM_003476
CCDS: CCDS7848, CCDS91449
Canonical transcript exons
ENST00000265968 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000707240 | 19186216 | 19186348 |
| ENSE00000707241 | 19188136 | 19188304 |
| ENSE00000997759 | 19192337 | 19192476 |
| ENSE00001746098 | 19184952 | 19185045 |
| ENSE00003834859 | 19201954 | 19201983 |
| ENSE00003891764 | 19182030 | 19182746 |
Expression profiles
Bgee: expression breadth ubiquitous, 173 present calls, max score 99.94.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 3.5223 / max 841.6679, expressed in 72 samples.
Highest expression (Bgee): skeletal muscle tissue of rectus abdominis, heart right ventricle, ventricle myocardium, biceps brachii, apex of heart.
Genetic regulation across tissues (GTEx eQTL / sQTL)
CSRP3 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 8 tissues and its splicing (sQTL) in 3 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
11 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Heart Atrial Appendage | sqtl | 4.6e-24 | +0.58 | 11:19185818:A:T |
| Heart Left Ventricle | sqtl | 2.1e-08 | +0.41 | 11:19186523:C:A |
| Muscle Skeletal | sqtl | 5.3e-04 | +0.21 | 11:19198727:TG:T |
| Spleen | eqtl | 3.6e-03 | +0.82 | 11:19681212:C:T |
| Skin Sun Exposed Lower leg | eqtl | 4.9e-03 | -0.43 | 11:19403687:A:T |
| Muscle Skeletal | eqtl | 6.6e-03 | +0.12 | 11:19221986:G:A |
| Adipose Subcutaneous | eqtl | 1.8e-02 | +0.41 | 11:19823822:C:T |
| Adrenal Gland | eqtl | 2.4e-02 | -0.47 | 11:19678778:C:T |
| Colon Transverse | eqtl | 3.4e-02 | +0.84 | 11:18569105:A:G |
| Skin Not Sun Exposed Suprapubic | eqtl | 3.5e-02 | -0.37 | 11:19537745:G:C |
| Testis | eqtl | 3.9e-02 | -0.61 | 11:19200782:C:T |
FANTOM5 promoters
2 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 118984 | 3.4820 | 71 |
| 206223 | 0.0403 | 19 |
Top tissues by expression
showing 100 of 283 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 99.94 | gold quality |
| heart right ventricle | UBERON:0002080 | 99.93 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 99.88 | gold quality |
| biceps brachii | UBERON:0001507 | 99.81 | gold quality |
| apex of heart | UBERON:0002098 | 99.81 | gold quality |
| myocardium | UBERON:0002349 | 99.79 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 99.76 | gold quality |
| diaphragm | UBERON:0001103 | 99.70 | gold quality |
| gluteal muscle | UBERON:0002000 | 99.69 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 99.63 | gold quality |
| cardiac atrium | UBERON:0002081 | 99.62 | gold quality |
| right atrium auricular region | UBERON:0006631 | 99.61 | gold quality |
| vastus lateralis | UBERON:0001379 | 99.60 | gold quality |
| quadriceps femoris | UBERON:0001377 | 99.57 | gold quality |
| triceps brachii | UBERON:0001509 | 99.55 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.55 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 99.47 | gold quality |
| body of tongue | UBERON:0011876 | 99.45 | gold quality |
| cardiac ventricle | UBERON:0002082 | 99.41 | gold quality |
| heart left ventricle | UBERON:0002084 | 99.39 | gold quality |
| vena cava | UBERON:0004087 | 99.31 | gold quality |
| deltoid | UBERON:0001476 | 99.16 | gold quality |
| tibialis anterior | UBERON:0001385 | 98.97 | gold quality |
| gastrocnemius | UBERON:0001388 | 95.94 | gold quality |
| muscle organ | UBERON:0001630 | 95.82 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 95.81 | gold quality |
| heart | UBERON:0000948 | 94.61 | gold quality |
| muscle tissue | UBERON:0002385 | 94.50 | gold quality |
| muscle of leg | UBERON:0001383 | 94.35 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 90.95 | gold quality |
| tongue | UBERON:0001723 | 90.62 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 82.72 | gold quality |
| superior surface of tongue | UBERON:0007371 | 82.50 | gold quality |
| oral cavity | UBERON:0000167 | 76.09 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 73.19 | gold quality |
| adrenal tissue | UBERON:0018303 | 67.52 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 64.25 | silver quality |
| mouth mucosa | UBERON:0003729 | 59.03 | gold quality |
| minor salivary gland | UBERON:0001830 | 58.98 | gold quality |
| synovial joint | UBERON:0002217 | 57.83 | gold quality |
| jejunum | UBERON:0002115 | 57.67 | gold quality |
| popliteal artery | UBERON:0002250 | 56.96 | gold quality |
| tibial artery | UBERON:0007610 | 56.93 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 56.77 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 56.62 | gold quality |
| right lung | UBERON:0002167 | 55.25 | gold quality |
| left coronary artery | UBERON:0001626 | 55.10 | gold quality |
| lymph node | UBERON:0000029 | 54.73 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 54.51 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 53.80 | gold quality |
| skin of leg | UBERON:0001511 | 53.77 | gold quality |
| aorta | UBERON:0000947 | 53.69 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 53.61 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 53.34 | gold quality |
| oocyte | CL:0000023 | 53.26 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 52.94 | gold quality |
| thyroid gland | UBERON:0002046 | 52.71 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 52.53 | gold quality |
| upper lobe of lung | UBERON:0008948 | 52.50 | gold quality |
| coronary artery | UBERON:0001621 | 52.41 | gold quality |
| embryo | UBERON:0000922 | 51.99 | silver quality |
| layer of synovial tissue | UBERON:0007616 | 51.97 | silver quality |
| omental fat pad | UBERON:0010414 | 51.85 | gold quality |
| peritoneum | UBERON:0002358 | 51.81 | gold quality |
| skin of abdomen | UBERON:0001416 | 51.77 | gold quality |
| tibial nerve | UBERON:0001323 | 51.53 | gold quality |
| anatomical system | UBERON:0000467 | 51.48 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 51.45 | gold quality |
| multicellular organism | UBERON:0000468 | 51.38 | gold quality |
| material anatomical entity | UBERON:0000465 | 51.37 | gold quality |
| right frontal lobe | UBERON:0002810 | 51.36 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 51.23 | gold quality |
| mucosa of stomach | UBERON:0001199 | 51.18 | gold quality |
| zone of skin | UBERON:0000014 | 51.17 | gold quality |
| amygdala | UBERON:0001876 | 50.88 | gold quality |
| cingulate cortex | UBERON:0003027 | 50.80 | gold quality |
| right lobe of liver | UBERON:0001114 | 50.77 | gold quality |
| putamen | UBERON:0001874 | 50.67 | gold quality |
| metanephros | UBERON:0000081 | 50.65 | gold quality |
| sigmoid colon | UBERON:0001159 | 50.62 | gold quality |
| body of stomach | UBERON:0001161 | 50.53 | gold quality |
| blood | UBERON:0000178 | 50.45 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 50.43 | gold quality |
| frontal pole | UBERON:0002795 | 50.41 | gold quality |
| hypothalamus | UBERON:0001898 | 50.31 | gold quality |
| thymus | UBERON:0002370 | 50.30 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 50.30 | gold quality |
| ascending aorta | UBERON:0001496 | 50.19 | gold quality |
| paraflocculus | UBERON:0005351 | 50.18 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 50.18 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 49.91 | gold quality |
| substantia nigra | UBERON:0002038 | 49.83 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 49.61 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 49.56 | gold quality |
| thoracic aorta | UBERON:0001515 | 49.53 | gold quality |
| esophagus | UBERON:0001043 | 49.52 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 49.37 | gold quality |
| esophagus mucosa | UBERON:0002469 | 49.29 | gold quality |
| cerebellar vermis | UBERON:0004720 | 49.25 | gold quality |
| lower esophagus | UBERON:0013473 | 49.23 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
HPA expression
RNA tissue specificity: Tissue enhanced
45 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Heart muscle | tissue | 2447.5 | high |
| Skeletal muscle | tissue | 1545.8 | high |
| Tongue | tissue | 540.3 | |
| Esophagus | tissue | 37.3 | not detected |
| Prostate | tissue | 30.8 | not detected |
| Breast | tissue | 2.6 | not detected |
| Pancreas | tissue | 2.5 | not detected |
| Postcentral gyrus | tissue | 1.5 | |
| Lymph node | tissue | 1.1 | not detected |
| Locus coeruleus | tissue | 1.1 | |
| Choroid plexus | tissue | 1.0 | |
| Nucleus accumbens | tissue | 0.9 | |
| Salivary gland | tissue | 0.8 | not detected |
| Hippocampus | tissue | 0.7 | not detected |
| Thyroid gland | tissue | 0.6 | not detected |
| Gallbladder | tissue | 0.4 | not detected |
| Vagina | tissue | 0.3 | not detected |
| Olfactory bulb | tissue | 0.3 | |
| Testis | tissue | 0.2 | not detected |
| Cerebral cortex | tissue | 0.2 | not detected |
| Ovary | tissue | 0.2 | not detected |
| Cerebellum | tissue | 0.2 | not detected |
| Retrosplenial and cingulate cortex | tissue | 0.2 | |
| Temporal cortex | tissue | 0.2 | |
| Insular cortex | tissue | 0.2 | |
| Pituitary gland | tissue | 0.1 | |
| Prefrontal cortex | tissue | 0.1 | |
| Stomach 1 | tissue | 0.1 | not detected |
| Adipose tissue | tissue | 0.1 | not detected |
| Colon | tissue | 0.1 | not detected |
| Urinary bladder | tissue | 0.1 | not detected |
| Endometrium 1 | tissue | 0.1 | not detected |
| Motor cortex | tissue | 0.1 | |
| Amygdala | tissue | 0.1 | |
| Hypothalamus | tissue | 0.1 | |
| Superior colliculi | tissue | 0.1 | |
| Placenta | tissue | 0.1 | not detected |
| Thymus | tissue | 0.1 | |
| Bone marrow | tissue | 0.1 | not detected |
| Tonsil | tissue | 0.1 | not detected |
| Hippocampal formation | tissue | 0.1 | |
| Entorhinal cortex | tissue | 0.1 | |
| Periaqueductal gray | tissue | 0.1 | |
| Retrosplenial cortex | tissue | 0.1 | |
| Occipital cortex | tissue | 0.1 |
Brain sub-regions (HPA Brain Atlas): detected in 184; highest nTPM — Blood vessel (13.8), Vermis (2.0), Area striata (white matter) (1.7), Flocculonodular lobe (1.7), Cerebellar cortex (1.6).
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MEF2C
miRNA regulators (miRDB)
Targeting CSRP3 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 31 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4682 | 100.00 | 68.89 | 1258 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-369-3P | 99.85 | 70.52 | 2264 |
| HSA-MIR-6875-3P | 99.82 | 70.26 | 2983 |
| HSA-MIR-4307 | 99.82 | 70.45 | 3374 |
| HSA-MIR-4760-5P | 99.80 | 69.88 | 1619 |
| HSA-MIR-489-3P | 99.80 | 66.46 | 839 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4422 | 99.72 | 72.07 | 2908 |
| HSA-MIR-1197 | 99.70 | 67.75 | 1027 |
| HSA-MIR-8061 | 99.63 | 69.44 | 1411 |
| HSA-MIR-543 | 99.52 | 69.03 | 2595 |
| HSA-MIR-136-5P | 99.50 | 67.26 | 1153 |
| HSA-MIR-4251 | 99.40 | 69.19 | 3363 |
| HSA-MIR-4784 | 99.15 | 67.41 | 1733 |
| HSA-MIR-5701 | 98.97 | 69.54 | 1502 |
| HSA-MIR-3150B-3P | 98.81 | 67.21 | 1728 |
| HSA-MIR-2117 | 98.48 | 67.97 | 1307 |
| HSA-MIR-12126 | 98.09 | 64.82 | 637 |
| HSA-MIR-4303 | 98.01 | 68.13 | 2304 |
| HSA-MIR-450A-2-3P | 97.91 | 67.56 | 1459 |
| HSA-MIR-890 | 97.47 | 68.67 | 982 |
| HSA-MIR-3200-5P | 97.34 | 65.97 | 826 |
| HSA-MIR-4689 | 96.97 | 65.79 | 1209 |
Functional genomics
gnomAD constraint: pLI 1.04e-07, LOEUF 1.31, missense Z 0.466 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD RMC): no regional variation along ENST00000265968 — one region, missense o/e 0.96.
Literature-anchored findings (GeneRIF, showing 21)
- CSRP3 is involved in cardiac mechanosensory processes, is localized to the sarcomeric Z-disc and human mutations cause cardiomyopathy(DCM)and heart failure. (PMID:12507422)
- Mutations in the CRP3/MLP gene can cause hypertrophic cardiomyopathy (HCM) and dilated cardiomyopathy (DCM). (PMID:12642359)
- CSRP3, MUSTN1, SIX1, and FBXO32 expression changes in response to lengthening and shortening contractions in human muscle (PMID:17519359)
- A myocardial actin-binding protein that increases actin cytoskeleton stability by promoting bundling of actin filaments. (PMID:18331358)
- These findings suggest that hhLIM is a typical LIM family member with powerful transcription activation. (PMID:18393774)
- Study used linkage analysis and identified a CSRP3 missense mutation in a large German family affected by hypertrophic cardiomyopathy. (PMID:18505755)
- CSRP3 mutation was found involved in hypertrophic cardiomyopathy. (PMID:19035361)
- The structure of both LIM domains of human MLP by nuclear magnetic resonance spectroscopy. (PMID:19230835)
- CRP3/MLP is primarily expressed in arterial smooth muscle cells and that stretch is the main stimulus for CRP3/MLP induction in veins exposed to arterial haemodynamic conditions. (PMID:19351738)
- Complete chemical shift assignment was achieved for the first LIM domain and for most of the second domain, the N-terminal and C-terminal linker and part of the intervening linker. (PMID:19636821)
- MLP binds directly to CFL2 in human cardiac and skeletal muscles. (PMID:19752190)
- The CSRP3-W4R mutation causes cardiomyopathy and heart failure in patients and engineered knock-in animals. (PMID:20044516)
- KLF5 reverses hhLIM function from anti-proliferation to pro-proliferation through its interaction with hhLIM on the cyclin E promoter. (PMID:22584587)
- study reports the discovery of an alternative splice variant of muscle lim protein encoded by the CSRP3 gene, designated as MLP-b, showing distinct expression in neuromuscular disease and direct roles in actin dynamics and muscle differentiation (PMID:24860983)
- MLP contributes to the maintenance of cardiomyocyte cytoarchitecture by a mechanism involving its self-association and actin filament cross-linking. (PMID:24934443)
- Previous results along with the newly identified homozygous CSRP3 truncating variants in two unrelated hypertrophic cardiomyopathy (HCM) patients suggest that the association of CSRP3 as a validated HCM-causing gene require additional studies and those CSRP3 variants could result in HCM with an autosomal recessive inheritance rather than with an autosomal dominant transmission as usually reported on HCM. (PMID:30012424)
- MLP-deficient human embryonic stem cell derived cardiomyocytes recapitulate the pathogenesis of hypertrophic cardiomyopathy. (PMID:31406109)
- Identification of a variant hotspot in MYBPC3 and of a novel CSRP3 autosomal recessive alteration in a cohort of Polish patients with hypertrophic cardiomyopathy. (PMID:31919335)
- The p.(Cys150Tyr) variant in CSRP3 is associated with late-onset hypertrophic cardiomyopathy in heterozygous individuals. (PMID:33035702)
- LIM domain-wide comprehensive virtual mutagenesis provides structural rationale for cardiomyopathy mutations in CSRP3. (PMID:35241752)
- Identification and in silico characterization of CSRP3 synonymous variants in dilated cardiomyopathy. (PMID:36877346)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | csrp3 | ENSDARG00000101706 |
| mus_musculus | Csrp3 | ENSMUSG00000030470 |
| rattus_norvegicus | Csrp3 | ENSRNOG00000014327 |
| drosophila_melanogaster | Mlp84B | FBGN0014863 |
| drosophila_melanogaster | Mlp60A | FBGN0259209 |
| caenorhabditis_elegans | WBGENE00003375 |
Paralogs (2): CSRP1 (ENSG00000159176), CSRP2 (ENSG00000175183)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:1330824) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 34 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| dilated heart left ventricle | 3 |
| dilated cardiomyopathy | 3 |
| increased heart weight | 3 |
| increased heart left ventricle weight | 2 |
| decreased cardiac muscle contractility | 2 |
| abnormal heart morphology | 1 |
| enlarged heart | 1 |
| myopathy | 1 |
| decreased body weight | 1 |
| abnormal cardiovascular system physiology | 1 |
| cardiac hypertrophy | 1 |
| premature death | 1 |
| abnormal skeletal muscle fiber morphology | 1 |
| cardiac fibrosis | 1 |
| abnormal cardiac muscle relaxation | 1 |
| abnormal myocardial fiber physiology | 1 |
| decreased response of heart to induced stress | 1 |
| increased myocardial fiber size | 1 |
| abnormal heart ventricle morphology | 1 |
| cardiomyopathy | 1 |
| decreased heart ventricle muscle contractility | 1 |
| increased cardiac muscle contractility | 1 |
| cardiac interstitial fibrosis | 1 |
| increased lung weight | 1 |
| abnormal heart septum morphology | 1 |
+9 more (showing top 25).
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Oryctolagus cuniculus | O77506 | 100.0% | Diamond |
| Gallus gallus | P67966 | 100.0% | Diamond |
| Coturnix japonica | P67967 | 100.0% | Diamond |
| Bos taurus | Q32LE9 | 100.0% | Diamond |
| Pongo abelii | Q5R5W0 | 100.0% | Diamond |
| Arabidopsis thaliana | O04193 | 85.0% | Diamond |
| Sus scrofa | B0KYV5 | 82.5% | Diamond |
| Helianthus annuus | P29675 | 72.0% | Diamond |
| Oryza sativa Japonica Group | Q7F9R9 | 64.7% | Diamond |
| Dictyostelium discoideum | Q9BIW4 | 50.9% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| NAV2-AS5 | ncRNA | 100874012 |
| MRGPRX2 | protein-coding | 117194 |
| ZDHHC13 | protein-coding | 54503 |
| E2F8 | protein-coding | 79733 |
| NAV2 | protein-coding | 89797 |
| CSRP3-AS1 | ncRNA | 105376580 |
Protein
Protein identifiers
Cysteine and glycine-rich protein 3 — P50461 (reviewed: P50461)
Alternative names: Cardiac LIM protein, Cysteine-rich protein 3, LIM domain protein, cardiac, Muscle LIM protein
All UniProt accessions (5): A0A3B3IRI5, A0A3B3ISZ2, A0A3B3IT61, A2TDB8, P50461
UniProt curated annotations — full annotation on UniProt →
Function. Positive regulator of myogenesis. Acts as a cofactor for myogenic bHLH transcription factors such as MYOD1, and probably MYOG and MYF6. Enhances the DNA-binding activity of the MYOD1:TCF3 isoform E47 complex and may promote formation of a functional MYOD1:TCF3 isoform E47:MEF2A complex involved in myogenesis. Plays a crucial and specific role in the organization of cytosolic structures in cardiomyocytes. Could play a role in mechanical stretch sensing. May be a scaffold protein that promotes the assembly of interacting proteins at Z-line structures. It is essential for calcineurin anchorage to the Z line. Required for stress-induced calcineurin-NFAT activation. The role in regulation of cytoskeleton dynamics by association with CFL2 is reported conflictingly: Shown to enhance CFL2-mediated F-actin depolymerization dependent on the CSRP3:CFL2 molecular ratio, and also shown to reduce the ability of CLF1 and CFL2 to enhance actin depolymerization. Proposed to contribute to the maintenance of muscle cell integrity through an actin-based mechanism. Can directly bind to actin filaments, cross-link actin filaments into bundles without polarity selectivity and protect them from dilution- and cofilin-mediated depolymerization; the function seems to involve its self-association. In vitro can inhibit PKC/PRKCA activity. Proposed to be involved in cardiac stress signaling by down-regulating excessive PKC/PRKCA signaling. May play a role in early sarcomere organization. Overexpression in myotubes negatively regulates myotube differentiation. By association with isoform 1 and thus changing the CSRP3 isoform 1:CFL2 stoichiometry is proposed to down-regulate CFL2-mediated F-actin depolymerization.
Subunit / interactions. Self-associates. Oligomeric in the cytoplasm and monomeric in the nucleus. Homooligomers preferentially form along the actin cytoskeleton. Isoform 2 interacts with isoform 1. Isoform 1 but not isoform 2 interacts with MYOD1 and MYOG. Isoform 1 interacts with TCAP, ACTN2 and NRAP. Isoform 2 interacts with TCAP and alpha-actinin. Interacts with LDHD. Interacts (via N-terminus)with GLRX3 (via C-terminus) and PPP3CA; GLRX3 and calcineurin compete for interaction with CSRP3. Interacts with MYF6. Interacts with CFL2; the stoichiometry influences F-actin depolymerization and possibly two molecules of CFL2 can interact with one molecule of CSRP3 resulting in the highest functional impact; the interaction is stronger with phosphorylated CFL2.
Subcellular location. Nucleus. Cytoplasm. Cytoskeleton. Myofibril. Sarcomere. Z line. Sarcomere Cytoplasm.
Tissue specificity. Cardiac and slow-twitch skeletal muscles. Isoform 2 is expressed in striated muscle. Isoform 2 is specifically expressed at higher levels in patients with neuromuscular diseases, such as limb-girdle muscular dystrophy 2A (LGMD2A), Duchenne muscular dystrophy (DMD) and dermatomyositis.
Post-translational modifications. Phosphorylated by PKC/PRKCA.
Disease relevance. Cardiomyopathy, dilated, 1M (CMD1M) [MIM:607482] A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. The disease is caused by variants affecting the gene represented in this entry. Cardiomyopathy, familial hypertrophic, 12 (CMH12) [MIM:612124] A hereditary heart disorder characterized by ventricular hypertrophy, which is usually asymmetric and often involves the interventricular septum. The symptoms include dyspnea, syncope, collapse, palpitations, and chest pain. They can be readily provoked by exercise. The disorder has inter- and intrafamilial variability ranging from benign to malignant forms with high risk of cardiac failure and sudden cardiac death. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. LIM zinc-binding domain 1 is required for self-association. LIM zinc-binding domain 1 and LIM zinc-binding domain 2 both are required for optimal actin-bundling activity. LIM zinc-binding domain 1 mediates binding to MYOD1. LIM zinc-binding domain 2 mediates binding to SPTB.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P50461-1 | 1, MLP-a | yes |
| P50461-2 | 2, MLP-b |
RefSeq proteins (2): NP_001356333, NP_003467* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001781 | Znf_LIM | Domain |
Pfam: PF00412
UniProt features (38 total): strand 11, turn 6, sequence variant 5, helix 4, domain 2, region of interest 2, modified residue 2, splice variant 2, chain 1, mutagenesis site 1, sequence conflict 1, short sequence motif 1
Structure
Experimental structures (PDB)
2 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 2O10 | Solution structure of the N-terminal LIM domain of MLP/CRP3 | SOLUTION NMR | |
| 2O13 | Solution structure of the C-terminal LIM domain of MLP/CRP3 | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P50461-F1 | 73.91 | 0.13 |
Human Protein Atlas
Protein class: Predicted intracellular proteins, Plasma proteins, Disease related genes, Human disease related genes
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): cytosol; nucleoplasm
Antibody reliability (HPA): IH enhanced · IF uncertain
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2)
| Type | Positions |
|---|---|
| Phosphoserine | 95, 153 |
Mutagenesis-validated functional residues (1)
| Position | Phenotype |
|---|---|
| 69 | increases pkc/prkca activity. |
Function
Pathways and Gene Ontology
Reactome pathways
0 curated (TAS) of 0; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
MSigDB gene sets: 244 (showing top):
GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_RESPONSE_TO_MUSCLE_STRETCH, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_INFLAMMATORY_RESPONSE, GOBP_PLASMA_MEMBRANE_ORGANIZATION, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_CARDIAC_MYOFIBRIL_ASSEMBLY, MEF2_02, GOBP_ESTABLISHMENT_OF_PROTEIN_LOCALIZATION_TO_ORGANELLE, MODULE_329, GOBP_SARCOMERE_ORGANIZATION, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, GNF2_MYL3
GO Biological Process (19): regulation of the force of heart contraction (GO:0002026), cardiac muscle hypertrophy (GO:0003300), DNA-templated transcription (GO:0006351), intracellular calcium ion homeostasis (GO:0006874), skeletal muscle tissue development (GO:0007519), detection of muscle stretch (GO:0035995), sarcomere organization (GO:0045214), negative regulation of myoblast differentiation (GO:0045662), positive regulation of myoblast differentiation (GO:0045663), positive regulation of transcription by RNA polymerase II (GO:0045944), cardiac muscle tissue development (GO:0048738), cardiac myofibril assembly (GO:0055003), cardiac muscle contraction (GO:0060048), muscle tissue development (GO:0060537), establishment of protein localization to organelle (GO:0072594), negative regulation of actin filament severing (GO:1903919), positive regulation of actin filament severing (GO:1903920), muscle organ development (GO:0007517), cell differentiation (GO:0030154)
GO Molecular Function (7): actin binding (GO:0003779), structural constituent of muscle (GO:0008307), telethonin binding (GO:0031433), identical protein binding (GO:0042802), actinin binding (GO:0042805), metal ion binding (GO:0046872), protein binding (GO:0005515)
GO Cellular Component (6): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), cytoskeleton (GO:0005856), Z disc (GO:0030018), sarcomere (GO:0030017)
GO top-level categories
46 GO namespaces:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| cytoskeletal protein binding | 3 |
| striated muscle tissue development | 2 |
| myofibril assembly | 2 |
| myoblast differentiation | 2 |
| regulation of myoblast differentiation | 2 |
| actin filament severing | 2 |
| regulation of actin filament severing | 2 |
| regulation of heart contraction | 1 |
| regulation of biological quality | 1 |
| striated muscle hypertrophy | 1 |
| gene expression | 1 |
| RNA biosynthetic process | 1 |
| intracellular monoatomic cation homeostasis | 1 |
| calcium ion homeostasis | 1 |
| skeletal muscle organ development | 1 |
| response to muscle stretch | 1 |
| detection of mechanical stimulus | 1 |
| actomyosin structure organization | 1 |
| negative regulation of cell differentiation | 1 |
| positive regulation of cell differentiation | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription | 1 |
| heart development | 1 |
| cardiac muscle cell development | 1 |
| striated muscle contraction | 1 |
| heart contraction | 1 |
| tissue development | 1 |
| animal gross anatomical part developmental process | 1 |
| establishment of protein localization | 1 |
| negative regulation of cellular process | 1 |
| positive regulation of cellular process | 1 |
| animal organ development | 1 |
| muscle structure development | 1 |
| cellular developmental process | 1 |
| structural molecule activity | 1 |
| protein binding | 1 |
| cation binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| intracellular membraneless organelle | 1 |
| I band | 1 |
| myofibril | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 15 of 32 annotations. The rest are phylogenetic / computational / electronic (IEA).
15 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| cardiac muscle contraction | BP | mutant phenotype |
| cardiac muscle hypertrophy | BP | mutant phenotype |
| detection of muscle stretch | BP | mutant phenotype |
| establishment of protein localization to organelle | BP | mutant phenotype |
| negative regulation of actin filament severing | BP | direct assay |
| negative regulation of myoblast differentiation | BP | direct assay |
| positive regulation of actin filament severing | BP | direct assay |
| positive regulation of myoblast differentiation | BP | direct assay |
| positive regulation of transcription by RNA polymerase II | BP | genetic interaction |
| sarcomere organization | BP | mutant phenotype |
| Z disc | CC | direct assay |
| cytosol | CC | direct assay |
| identical protein binding | MF | physical interaction |
| structural constituent of muscle | MF | mutant phenotype |
| telethonin binding | MF | direct assay |
Protein interactions and networks
STRING
showing 15 of 1,060 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CSRP3 | MYBPC3 | Q14896 | 880 |
| CSRP3 | TCAP | O15273 | 867 |
| CSRP3 | MYL3 | P08590 | 852 |
| CSRP3 | ACTC1 | P04270 | 842 |
| CSRP3 | TNNI3 | P19429 | 835 |
| CSRP3 | MYH7 | P12883 | 830 |
| CSRP3 | TTN | Q8WZ42 | 830 |
| CSRP3 | TNNT2 | P45379 | 828 |
| CSRP3 | TPM1 | P09493 | 822 |
| CSRP3 | MYL2 | P10916 | 795 |
| CSRP3 | LDB3 | O75112 | 783 |
| CSRP3 | ACTN2 | P35609 | 775 |
| CSRP3 | RBM20 | Q5T481 | 773 |
| CSRP3 | PRKAG2 | Q9UGJ0 | 770 |
| CSRP3 | MYH6 | P13533 | 747 |
IntAct
Human interaction partners of CSRP3 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
14 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| ACTN2 | direct interaction | 0.690 | 3 |
| TCAP | association | 0.630 | 3 |
| HTT | physical association | 0.560 | 3 |
| CFL2 | direct interaction | 0.440 | 2 |
| NRAP | direct interaction | 0.440 | 2 |
| MYOD1 | direct interaction | 0.440 | 1 |
| MYOG | direct interaction | 0.440 | 1 |
| SDC4 | direct interaction | 0.440 | 1 |
| XPNPEP1 | physical association | 0.400 | 1 |
| RIN3 | physical association | 0.370 | 1 |
| MRPL11 | association | 0.350 | 1 |
| NME2 | association | 0.350 | 1 |
| FHL1 | physical association | 0.000 | 1 |
| LIMS1 | physical association | 0.000 | 1 |
BioGRID (19 interactions; top human partners by supporting records): MYOD1 (Phenotypic Enhancement; 4 records), HDAC4 (Affinity Capture-Western; 2 records), FHL1 (Two-hybrid), GNB2 (Affinity Capture-MS), KLF5 (Affinity Capture-Western), LDHD (Reconstituted Complex), LIMS1 (Two-hybrid), MRPL11 (Affinity Capture-MS), MYF6 (Reconstituted Complex), MYOG (Reconstituted Complex), NME2 (Affinity Capture-MS), RIN3 (Two-hybrid), SMPDL3B (Affinity Capture-MS), UCHL1 (Affinity Capture-MS), XPNPEP1 (Affinity Capture-MS)
SIGNOR signaling
3 signaling interactions:
| A | Effect | B | Mechanism |
|---|---|---|---|
| CSRP3 | “up-regulates activity” | MYF6 | binding |
| CSRP3 | “up-regulates activity” | MYOG | binding |
| CSRP3 | “up-regulates activity” | MYOD1 | binding |
Disease & clinical
Genetic variants
Variant evidence for CSRP3: 515 ClinVar records (34 pathogenic / likely pathogenic); 1 PharmGKB clinical annotation; 9 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
515 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 23 |
| Likely pathogenic | 11 |
| Uncertain significance | 272 |
| Likely benign | 133 |
| Benign | 19 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 34 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 8777 | NM_003476.5(CSRP3):c.172T>G (p.Cys58Gly) | Pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 1324182 | NM_003476.5(CSRP3):c.50_51insGCAGATTTCTT (p.Tyr18fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 216572 | NM_003476.5(CSRP3):c.337A>T (p.Lys113Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 915578 | NM_003476.5(CSRP3):c.414+1G>T | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 3 |
| 222535 | NM_003476.5(CSRP3):c.49del (p.Val17fs) | Pathogenic | criteria provided, single submitter | 1 |
| 279792 | NM_003476.5(CSRP3):c.122_123dup (p.Lys42fs) | Pathogenic | criteria provided, single submitter | 1 |
| 543041 | NM_003476.5(CSRP3):c.55del (p.His19fs) | Pathogenic | criteria provided, single submitter | 1 |
| 655718 | NM_003476.5(CSRP3):c.52del (p.Tyr18fs) | Pathogenic | criteria provided, single submitter | 1 |
| 1008253 | NM_003476.5(CSRP3):c.377C>G (p.Ser126Ter) | Pathogenic | criteria provided, single submitter | 1 |
| 1009234 | NM_003476.5(CSRP3):c.49_55del (p.Val17fs) | Pathogenic | criteria provided, single submitter | 1 |
| 1418855 | NM_003476.5(CSRP3):c.82_85del (p.Arg28fs) | Pathogenic | criteria provided, single submitter | 1 |
| 1470431 | NM_003476.5(CSRP3):c.165del (p.Ile56fs) | Pathogenic | criteria provided, single submitter | 1 |
| 2932324 | NM_003476.5(CSRP3):c.186T>G (p.Tyr62Ter) | Pathogenic | criteria provided, single submitter | 1 |
| 2951005 | NM_003476.5(CSRP3):c.279del (p.Gln93fs) | Pathogenic | criteria provided, single submitter | 1 |
| 3752686 | NM_003476.5(CSRP3):c.444dup (p.Ile149fs) | Pathogenic | criteria provided, single submitter | 1 |
Per-variant reference — Sugi Variant
Explore CSRP3’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 26 predictions of 429):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 11:19185046–19185047 | acceptor_loss | 1.0000 | 5 |
| 11:19186258 | donor_gain | 1.0000 | |
| 11:19185047 | acceptor_loss | 0.9900 | |
| 11:19186214–19186215 | donor_loss | 0.9900 | 5 |
| 11:19186349–19186350 | acceptor_loss | 0.9900 | 6 |
| 11:19184950–19184951 | donor_loss | 0.9800 | 4 |
| 11:19186214 | donor_loss | 0.9800 | |
| 11:19186253 | donor_gain | 0.9800 | |
| 11:19184950 | donor_loss | 0.9700 | |
| 11:19186351 | acceptor_loss | 0.9700 |
HPA cancer prognostics
RNA cancer specificity: Cancer enriched (Head and Neck Squamous Cell Carcinoma)
Disease associations
OMIM: gene MIM:600824 | disease phenotypes: MIM:607482, MIM:612124
GenCC curated gene-disease
4 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| hypertrophic cardiomyopathy 12 | Definitive | Autosomal dominant | 4 |
| familial isolated dilated cardiomyopathy | Supportive | Autosomal dominant | |
| dilated cardiomyopathy 1M | Limited | Autosomal dominant | 2 |
| familial dilated cardiomyopathy | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
2 validity classifications:
| Disease | Classification | Inheritance |
|---|---|---|
| hypertrophic cardiomyopathy | Definitive | SD |
| dilated cardiomyopathy 1M | Limited | AD |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (6 panels, 3 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
6 panels:
| Panel | Rating |
|---|---|
| Dilated Cardiomyopathy and conduction defects | green |
| Hypertrophic cardiomyopathy | green |
| Paediatric or syndromic cardiomyopathy | green |
| Dilated and arrhythmogenic cardiomyopathy | amber |
| Sudden unexplained death or survivors of a cardiac event | amber |
| Unexplained death in infancy and sudden unexplained death in childhood | amber |
Mondo (7): dilated cardiomyopathy 1M (MONDO:0011840), hypertrophic cardiomyopathy 12 (MONDO:0012804), cardiomyopathy (MONDO:0004994), dilated cardiomyopathy (MONDO:0005021), hypertrophic cardiomyopathy (MONDO:0005045), (MONDO:0015470), familial dilated cardiomyopathy (MONDO:0016333)
Orphanet (4): Familial isolated dilated cardiomyopathy (Orphanet:154), Rare cardiomyopathy (Orphanet:167848), Dilated cardiomyopathy (Orphanet:217604), Rare hypertrophic cardiomyopathy (Orphanet:217569)
HPO phenotypes
25 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000969 | Edema |
| HP:0001635 | Congestive heart failure |
| HP:0001639 | Hypertrophic cardiomyopathy |
| HP:0001644 | Dilated cardiomyopathy |
| HP:0001645 | Sudden cardiac death |
| HP:0001706 | Endocardial fibroelastosis |
| HP:0001727 | Thromboembolic stroke |
| HP:0002875 | Exertional dyspnea |
| HP:0003198 | Myopathy |
| HP:0003457 | EMG abnormality |
| HP:0003581 | Adult onset |
| HP:0004756 | Ventricular tachycardia |
| HP:0004757 | Paroxysmal atrial fibrillation |
| HP:0005144 | Ventricular septal hypertrophy |
| HP:0006670 | Impaired myocardial contractility |
| HP:0011675 | Arrhythmia |
| HP:0012378 | Fatigue |
| HP:0012664 | Reduced left ventricular ejection fraction |
| HP:0012764 | Orthopnea |
| HP:0025169 | Left ventricular systolic dysfunction |
| HP:0033755 | Increased left ventricular end-diastolic volume |
| HP:0034386 | Reduced left ventricular endsystolic diameter |
| HP:0100578 | Lipoatrophy |
GWAS associations
9 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST90002390_450 | Mean corpuscular hemoglobin | 1e-38 |
| GCST90002403_434 | Red blood cell count | 1e-28 |
| GCST90002392_270 | Mean corpuscular volume | 2e-24 |
| GCST90002397_4 | Mean spheric corpuscular volume | 3e-24 |
| GCST004602_247 | Mean corpuscular volume | 9e-20 |
| GCST004601_22 | Red blood cell count | 8e-16 |
| GCST004630_76 | Mean corpuscular hemoglobin | 6e-14 |
| GCST90002392_269 | Mean corpuscular volume | 5e-12 |
| GCST004863_36 | Mosquito bite size | 7e-6 |
EFO canonical traits (from GWAS)
3 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0004305 | erythrocyte count |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0008378 | mosquito bite reaction size measurement |
MeSH disease descriptors
5 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| C564390 | Cardiomyopathy, Dilated, 1M *(supp.)* | |
| C536231 | familial dilated cardiomyopathy *(supp.)* |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (CPIC guideline: no)
PharmGKB clinical annotations
1 annotations by evidence level (1 strongest → 4):
| Variant | Association | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs983332 | Efficacy | 3 | Tumor necrosis factor alpha (TNF-alpha) inhibitors | Rheumatoid arthritis |
PharmGKB variants
1 variants:
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs983332 | CSRP3 | 3 | 2.75 | 1 | Tumor necrosis factor alpha (TNF-alpha) inhibitors |
PharmGKB variant annotations
Per-publication pharmacogenomic findings for this gene (significant associations).
1 published findings:
| Variant | Drug(s) | Category | Finding | PMID |
|---|---|---|---|---|
| rs983332 | Tumor necrosis factor alpha (TNF-alpha) inhibitors | Efficacy | Allele T is associated with increased risk of non-response when treated with Tumor necrosis factor alpha (TNF-alpha) inhibitors in people with Arthritis, Rheumatoid as compared to allele G. | PMID:18615156 |
CTD chemical–gene interactions
21 total (human), top 21 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| bisphenol A | increases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| perfluorohexanesulfonic acid | increases expression | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| Temozolomide | affects response to substance | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Carmustine | affects response to substance | 1 |
| Doxorubicin | increases expression | 1 |
| Lipopolysaccharides | affects response to substance, increases expression, affects cotreatment | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Triclosan | decreases expression | 1 |
| Valproic Acid | decreases methylation | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Sodium Selenite | decreases expression | 1 |
| Okadaic Acid | increases expression | 1 |
Cellosaurus cell lines
2 cell lines: 1 embryonic stem cell, 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A1YG | WAe009-A-41 | Embryonic stem cell | Female |
| CVCL_E1UM | HAP1 CSRP3 (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 308 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT01798992 | Phase 4 | COMPLETED | Effect of Beta-blockers on Structural Remodeling and Gene Expression in the Failing Human Heart |
| NCT00348530 | Phase 4 | UNKNOWN | Carvedilol Versus Verapamil in Chronic Heart Failure Secondary to Non-Ischemic Cardiomyopathy |
| NCT00371891 | Phase 4 | COMPLETED | Ontario Multidetector Computed Tomographic (MDCT) Coronary Angiography Study (OMCAS) |
| NCT00401856 | Phase 4 | COMPLETED | CMR to Assess Fibrosis in Cardiomyopathy Using Eplerenone |
| NCT00559338 | Phase 4 | COMPLETED | Impact of Nesiritide Infusion for Decompensated Heart Failure in the Emergency Department |
| NCT00606775 | Phase 4 | UNKNOWN | The Preventive Efficacy of Carvedilol on Cardiac Dysfunction in Duchenne Muscular Dystrophy |
| NCT00658203 | Phase 4 | COMPLETED | Clinical Evaluation on Advanced Resynchronization |
| NCT00701220 | Phase 4 | COMPLETED | Statin Therapy for Ischemic and Nonischemic Cardiomyopathy |
| NCT00800761 | Phase 4 | COMPLETED | Intensive Combined Chelation Therapy for Iron-Induced Cardiac Disease in Patients With Thalassemia Major |
| NCT00806390 | Phase 4 | TERMINATED | Prevention of Anthracycline or Trastuzumab Induced Cardiomyopathy by Metoprolol |
| NCT01006473 | Phase 4 | COMPLETED | Exercise Training in Chagas Cardiomyopathy |
| NCT01261065 | Phase 4 | COMPLETED | Mechanisms of Improvement With Beta-Blocker Treatment in Heart Failure |
| NCT01345188 | Phase 4 | COMPLETED | Ranolazine in Ischemic Cardiomyopathy |
| NCT01868841 | Phase 4 | COMPLETED | 123-I mIBG (AdreView) Heart-to-Mediastinal (H/M) Ratio and SPECT Imaging on a Small Field of View-High Efficiency Cardiac SPECT System |
| NCT02640846 | Phase 4 | UNKNOWN | Effects of Levosimendan, Milrinone and Norepinephrine on Left and Right Ventricular Function in Septic Shock |
| NCT03228823 | Phase 4 | UNKNOWN | Prospective Assessment of Premature Ventricular Contractions Suppression in Cardiomyopathy(PAPS) |
| NCT04323852 | Phase 4 | COMPLETED | Can Vitamin D Reduce Heart Muscle Damage After Bypass Surgery? |
| NCT05034432 | Phase 4 | RECRUITING | The PIVATAL Study -Study of Ventricular Arrhythmia (VTA) Ablation in Left Ventricular Assist Device (LVAD) Patients |
| NCT05371496 | Phase 4 | COMPLETED | Cardiac and Metabolic Effects of Semaglutide in Heart Failure With Preserved Ejection Fraction |
| NCT05718128 | Phase 4 | RECRUITING | Clinical Study of Endocardial Myocardial Biopsy |
| NCT06964464 | Phase 4 | RECRUITING | Comparative Effectiveness of Carvedilol Versus Metoprolol Succinate in Heart Failure Patients With an Implantable Cardioverter Defibrillator |
| NCT00170183 | Phase 3 | COMPLETED | Brain Natriuretic Peptide (BNP) to Preserve Renal Function in Hospitalized Patients With Heart Failure |
| NCT00270387 | Phase 3 | COMPLETED | A Study of Short-Term Outcomes and Economic Impact For Patients With Worsening Congestive Heart Failure When Natrecor (Nesiritide) is Added to Standard-Care Therapy, Compared to Administration of Placebo With Standard-Care Therapy |
| NCT00321295 | Phase 3 | COMPLETED | Biventricular Pacing In Patients With Left Ventricular Dysfunction After Cardiovascular Surgery |
| NCT00483197 | Phase 3 | UNKNOWN | VentrAssistTM LVAD as a Bridge to Cardiac Transplantation - Pivotal Trial |
| NCT00490321 | Phase 3 | UNKNOWN | VentrAssistTM LVAD for the Treatment of Advanced Heart Failure - Destination Therapy |
| NCT00626028 | Phase 3 | COMPLETED | Comparison of Inhaled Nitric Oxide and Oxygen in Participants Reactivity During Acute Pulmonary Vasodilator Testing |
| NCT01013714 | Phase 3 | UNKNOWN | Cardiac Sympathetic Denervation for Prevention of Ventricular Tachyarrhythmias |
| NCT01217827 | Phase 3 | COMPLETED | Implantable Cardioverter-Defibrillator Use in the VA System |
| NCT01648634 | Phase 3 | COMPLETED | Nebivolol for the Prevention of Left Ventricular Systolic Dysfunction in Patients With Duchenne Muscular Dystrophy |
| NCT02924285 | Phase 3 | COMPLETED | Catheter Ablation Versus Amiodarone for Therapy of Premature Ventricular Contractions in Patients With Structural Heart Disease |
| NCT03860935 | Phase 3 | COMPLETED | Efficacy and Safety of AG10 in Subjects With Transthyretin Amyloid Cardiomyopathy |
| NCT04166331 | Phase 3 | COMPLETED | Adjunctive DobutAmine in sePtic Cardiomyopathy With Tissue Hypoperfusion |
| NCT05175066 | Phase 3 | COMPLETED | Bisoprolol Administration to Prevent Anthracycline-induced Cardiotoxicity |
| NCT05237323 | Phase 3 | COMPLETED | Micophenolate Mofetil Versus Azathioprine in Myocarditis |
| NCT06158698 | Phase 3 | RECRUITING | CMP-MYTHiC Trial and Registry - CardioMyoPathy With MYocarditis THerapy With Colchicine |
| NCT06563895 | Phase 3 | RECRUITING | Acoramidis Transthyretin Amyloidosis Prevention Trial in the Young (ACT-EARLY) Study in Asymptomatic Carriers of a Pathogenic TTR Variant |
| NCT06846086 | Phase 3 | RECRUITING | Cardioprotective Effects of Melatonin in Patients With Cardiomyopathy |
| NCT07116473 | Phase 3 | NOT_YET_RECRUITING | To Evaluate the Long-term Safety and Tolerability of Acoramidis in Participants With Newly Diagnosed ATTR-CM (ACT-EARLY OLE) |
| NCT02033278 | Phase 2 | TERMINATED | Infusion Intracoronary of Mononuclear Autologous Adult no Expanded Stem Cells of Bone Marrow on Functional Recovery in Patients With Idiopathic Dilated Cardiomyopathy and Heart Failure. |
| NCT00185250 | Phase 2 | COMPLETED | Betaferon/ Betaseron (Interferon Beta-1b) in Patients With Chronic Viral Cardiomyopathy |
| NCT00490347 | Phase 2 | COMPLETED | VentrAssistTM LVAD as a Bridge to Cardiac Transplantation - Feasibility Trial |
| NCT00694161 | Phase 2 | COMPLETED | The Effects Of Fx-1006A On Transthyretin Stabilization And Clinical Outcome Measures In Patients With V122I Or Wild-Type TTR Amyloid Cardiomyopathy |
| NCT01102140 | Phase 2 | TERMINATED | The Impact of Pomegranate Extract on Chronic Cardiomyopathy Complicated by Renal Insufficiency (ImPrOVE): a Pilot Study |
| NCT01442129 | Phase 2 | COMPLETED | The Effect of Intramyocardial Injection of Mesenchymal Precursor Cells on Myocardial Function in Patients Undergoing LVAD Implantation |
| NCT01636570 | Phase 2 | COMPLETED | Vitamin D3 Supplementation for Heart Failure Patients |
| NCT01643330 | Phase 2 | COMPLETED | A Study of Genetically Targeted Enzyme Replacement Therapy for Advanced Heart Failure |
| NCT02016365 | Phase 2 | COMPLETED | Safety and Efficacy Study of Doxycycline/UrsoDeoxyCholicAcid on Disease Progression in ATTR Amyloidosis |
| NCT02362646 | Phase 2 | COMPLETED | Safety & Efficacy of Intramyocardial Injection of Mesenchymal Precursor Cells on Myocardial Function in LVAD Recipients |
| NCT02485938 | Phase 2 | COMPLETED | HOPE-Duchenne (Halt cardiomyOPathy progrEssion in Duchenne) |
| NCT02681913 | Phase 2 | UNKNOWN | Adenosine as an Adjunct to Blood Cardioplegia |
| NCT04304560 | Phase 2 | UNKNOWN | Value of SGLT2 Inhibitor (Dapagliflozin) as an Added Therapy in Diabetic Patients With Heart Failure With Reduced Ejection Fraction; Randomized Controlled Clinical Trial |
| NCT06080074 | Phase 2 | RECRUITING | Multicenter Trial of ECMO in Children With Severe Cardiac Failure Using the Cardiohelp System |
| NCT00696410 | Phase 1 | COMPLETED | The Impact of Zinc Supplementation on Left Ventricular Function in Nonischemic Cardiomyopathy |
| NCT02077010 | Phase 1 | COMPLETED | Nebulized Inhaled Milrinone in a Hospitalized Advanced Heart Failure Population |
| NCT02408432 | Phase 1 | COMPLETED | Bone Marrow Derived Mesenchymal Stem Cells in Improving Heart Function in Patients With Heart Failure Caused by Anthracyclines |
| NCT02646540 | Phase 1 | COMPLETED | AiDing Diuresis wIth Tolvaptan (ADD-IT) |
| NCT02962661 | Phase 1 | SUSPENDED | Donor Bone Marrow Derived Mesenchymal Stem Cells in Controlling Heart Failure in Patients With Cardiomyopathy Caused by Anthracyclines |
| NCT03899298 | Phase 1 | NOT_YET_RECRUITING | Safety and Clinical Outcomes With Amniotic and Umbilical Cord Tissue Therapy for Numerous Medical Conditions |
| NCT04023110 | Phase 1 | COMPLETED | Risk-Guided Cardioprotection With Carvedilol in Breast Cancer Patients Treated With Doxorubicin and/or Trastuzumab |
Related Atlas pages
- Associated diseases: dilated cardiomyopathy 1M, hypertrophic cardiomyopathy 12, familial isolated dilated cardiomyopathy, familial dilated cardiomyopathy, hypertrophic cardiomyopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cardiomyopathy, dilated cardiomyopathy, dilated cardiomyopathy 1M, familial dilated cardiomyopathy, familial hypertrophic cardiomyopathy, hypertrophic cardiomyopathy, hypertrophic cardiomyopathy 1, hypertrophic cardiomyopathy 12, Primrose syndrome