CSTF2T
gene geneOn this page
Also known as DKFZp434C1013KIAA0689CstF-64TtauCstF-64
Summary
CSTF2T (cleavage stimulation factor subunit 2 tau variant, HGNC:17086) is a protein-coding gene on chromosome 10q21.1, encoding Cleavage stimulation factor subunit 2 tau variant (Q9H0L4). May play a significant role in AAUAAA-independent mRNA polyadenylation in germ cells.
Enables RNA binding activity. Predicted to be involved in mRNA 3’-end processing. Located in nucleoplasm.
Source: NCBI Gene 23283 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 93 total
- MANE Select transcript:
NM_015235
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17086 |
| Approved symbol | CSTF2T |
| Name | cleavage stimulation factor subunit 2 tau variant |
| Location | 10q21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZp434C1013, KIAA0689, CstF-64T, tauCstF-64 |
| Ensembl gene | ENSG00000177613 |
| Ensembl biotype | protein_coding |
| OMIM | 611968 |
| Entrez | 23283 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000331173
RefSeq mRNA: 1 — MANE Select: NM_015235
NM_015235
CCDS: CCDS7245
Canonical transcript exons
ENST00000331173 — 1 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001324439 | 51695486 | 51699595 |
Expression profiles
Bgee: expression breadth ubiquitous, 283 present calls, max score 91.44.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 27.5406 / max 692.9407, expressed in 1815 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 109372 | 27.3733 | 1815 |
| 109371 | 0.1673 | 59 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| endothelial cell | CL:0000115 | 91.44 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 90.87 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 90.77 | gold quality |
| parietal pleura | UBERON:0002400 | 87.53 | gold quality |
| pons | UBERON:0000988 | 87.36 | gold quality |
| islet of Langerhans | UBERON:0000006 | 87.09 | gold quality |
| ganglionic eminence | UBERON:0004023 | 87.07 | gold quality |
| corpus callosum | UBERON:0002336 | 86.76 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 86.68 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 86.57 | gold quality |
| cortical plate | UBERON:0005343 | 86.57 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 86.57 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 86.56 | gold quality |
| biceps brachii | UBERON:0001507 | 86.46 | gold quality |
| hair follicle | UBERON:0002073 | 86.24 | silver quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 86.15 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 86.13 | gold quality |
| lymph node | UBERON:0000029 | 86.07 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 85.80 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 85.79 | gold quality |
| ventricular zone | UBERON:0003053 | 85.78 | gold quality |
| ventral tegmental area | UBERON:0002691 | 85.75 | gold quality |
| muscle of leg | UBERON:0001383 | 85.72 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 85.69 | gold quality |
| pleura | UBERON:0000977 | 85.64 | gold quality |
| muscle tissue | UBERON:0002385 | 85.64 | gold quality |
| superficial temporal artery | UBERON:0001614 | 85.57 | gold quality |
| spinal cord | UBERON:0002240 | 85.56 | gold quality |
| muscle organ | UBERON:0001630 | 85.55 | gold quality |
| heart right ventricle | UBERON:0002080 | 85.55 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.31 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
128 targeting CSTF2T, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
Literature-anchored findings (GeneRIF, showing 7)
- Radiation hybrid mapping places the human tauCstF-64 gene at 10q22-q23, which is the site of a translocation that has been associated with human neurological problems and male infertility. (PMID:12408968)
- structure of the RNA-binding domain of CstF-64 containing an RNA recognition motif (RRM) augmented by N- and C-terminal helices (PMID:12773396)
- upstream element in human papillomavirus type 16 interacted specifically with CstF-64, hnRNP C1/C2 & polypyrimidine tract binding protein, suggesting these factors were enhancing or regulating polyadenylation at the HPV-16 early polyadenylation signal (PMID:15767428)
- Studied expression levels of CstF-64 in EV71-infected cells; showed reduction of CstF-64 during virus infection correlated with production of viral 3C(pro). CstF-64 was cleaved in vitro by 3C(pro) not by mutant 3C(pro) variants. (PMID:19779565)
- CstF64 and CstF64tau modulate one another’s expression and play overlapping as well as distinct roles in regulating global alternative polyadenylation profiles. (PMID:24149845)
- CSTF2tau binds many previously not recognized RNAs including histone, snoRNA and snRNAs. CSTF2tau-binding is associated with internal oligoadenylation resulting in shortened snRNA isoforms subjected to rapid degradation. CSTF2tau controls the abundance of snRNAs resulting in alternative splicing of several RNAs with critical roles in tumorigenesis and cardiac function. (PMID:28334977)
- CSTF2T up-regulates IGHG1 by binding to ZEB1 to promote melanoma cell proliferation, migration, and invasion. (PMID:36736099)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Cstf2t | ENSMUSG00000053536 |
| rattus_norvegicus | Cstf2t | ENSRNOG00000070422 |
| drosophila_melanogaster | CstF64 | FBGN0027841 |
| caenorhabditis_elegans | WBGENE00000774 | |
| caenorhabditis_elegans | R06C1.4 | WBGENE00011059 |
Paralogs (5): U2AF2 (ENSG00000063244), CSTF2 (ENSG00000101811), RBMX2 (ENSG00000134597), ZCRB1 (ENSG00000139168), UHMK1 (ENSG00000152332)
Protein
Protein identifiers
Cleavage stimulation factor subunit 2 tau variant — Q9H0L4 (reviewed: Q9H0L4)
Alternative names: CF-1 64 kDa subunit tau variant, Cleavage stimulation factor 64 kDa subunit tau variant, TauCstF-64
All UniProt accessions (1): Q9H0L4
UniProt curated annotations — full annotation on UniProt →
Function. May play a significant role in AAUAAA-independent mRNA polyadenylation in germ cells. Directly involved in the binding to pre-mRNAs.
Subcellular location. Nucleus.
RefSeq proteins (1): NP_056050* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000504 | RRM_dom | Domain |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Homologous_superfamily |
| IPR025742 | CSTF2_hinge | Domain |
| IPR026896 | CSTF_C | Domain |
| IPR035979 | RBD_domain_sf | Homologous_superfamily |
| IPR038192 | CSTF_C_sf | Homologous_superfamily |
Pfam: PF00076, PF14304, PF14327
UniProt features (33 total): repeat 18, region of interest 5, compositionally biased region 4, modified residue 2, sequence conflict 2, chain 1, domain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H0L4-F1 | 60.27 | 0.14 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 320, 563
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-72187 | mRNA 3’-end processing |
| R-HSA-73856 | RNA Polymerase II Transcription Termination |
| R-HSA-77595 | Processing of Intronless Pre-mRNAs |
| R-HSA-9770562 | mRNA Polyadenylation |
| R-HSA-9918481 | Dengue Virus-Host Interactions |
| R-HSA-72203 | Processing of Capped Intron-Containing Pre-mRNA |
MSigDB gene sets: 139 (showing top):
BROWNE_HCMV_INFECTION_6HR_DN, BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, MATTIOLI_MGUS_VS_PCL, chr10q21, BOYLAN_MULTIPLE_MYELOMA_D_DN, GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_BLUE_DN, GOBP_REGULATION_OF_MRNA_3_END_PROCESSING, REACTOME_MRNA_3_END_PROCESSING, REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA, GOBP_MRNA_3_END_PROCESSING, GARY_CD5_TARGETS_DN, GRYDER_PAX3FOXO1_ENHANCERS_IN_TADS, ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN, REACTOME_METABOLISM_OF_RNA, OSMAN_BLADDER_CANCER_DN
GO Biological Process (2): mRNA 3’-end processing (GO:0031124), mRNA processing (GO:0006397)
GO Molecular Function (4): RNA binding (GO:0003723), mRNA binding (GO:0003729), nucleic acid binding (GO:0003676), protein binding (GO:0005515)
GO Cellular Component (3): nucleoplasm (GO:0005654), mRNA cleavage and polyadenylation specificity factor complex (GO:0005847), nucleus (GO:0005634)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| Processing of Capped Intron-Containing Pre-mRNA | 1 |
| RNA Polymerase II Transcription | 1 |
| Processing of Capped Intronless Pre-mRNA | 1 |
| mRNA 3’-end processing | 1 |
| Dengue Virus Infection | 1 |
| Metabolism of RNA | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| mRNA processing | 1 |
| RNA 3’-end processing | 1 |
| RNA processing | 1 |
| mRNA metabolic process | 1 |
| nucleic acid binding | 1 |
| RNA binding | 1 |
| nuclear lumen | 1 |
| cellular anatomical structure | 1 |
| mRNA cleavage factor complex | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
2608 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CSTF2T | LMOD1 | P29536 | 760 |
| CSTF2T | CSTF3 | Q12996 | 742 |
| CSTF2T | CSTF1 | Q05048 | 715 |
| CSTF2T | CPSF1 | Q10570 | 665 |
| CSTF2T | NUDT21 | O43809 | 664 |
| CSTF2T | CPSF3 | Q9UKF6 | 646 |
| CSTF2T | PCF11 | O94913 | 615 |
| CSTF2T | CPSF2 | Q9P2I0 | 613 |
| CSTF2T | SYMPK | Q92797 | 605 |
| CSTF2T | WDR33 | Q9C0J8 | 601 |
| CSTF2T | CPSF4 | O95639 | 563 |
| CSTF2T | CPSF6 | Q16630 | 549 |
| CSTF2T | NONO | P30807 | 532 |
| CSTF2T | FIP1L1 | Q6UN15 | 525 |
| CSTF2T | PAPOLG | Q9BWT3 | 487 |
IntAct
128 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| FANCG | FANCA | psi-mi:“MI:0914”(association) | 0.960 |
| RFX5 | RFXAP | psi-mi:“MI:0914”(association) | 0.880 |
| UBQLN1 | CSTF2T | psi-mi:“MI:0915”(physical association) | 0.780 |
| CSTF2T | UBQLN1 | psi-mi:“MI:0915”(physical association) | 0.780 |
| BIRC2 | HTRA2 | psi-mi:“MI:0914”(association) | 0.650 |
| CSTF2T | HGS | psi-mi:“MI:0915”(physical association) | 0.560 |
| UBQLN1 | CSTF2T | psi-mi:“MI:0915”(physical association) | 0.560 |
| HGS | CSTF2T | psi-mi:“MI:0915”(physical association) | 0.560 |
| CSTF2T | psi-mi:“MI:0915”(physical association) | 0.560 | |
| FOXJ2 | CSTF2T | psi-mi:“MI:0915”(physical association) | 0.560 |
| CSTF2T | UBQLN2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CTAG1A | CSTF2T | psi-mi:“MI:0915”(physical association) | 0.560 |
| PKNOX2 | CSTF2T | psi-mi:“MI:0915”(physical association) | 0.560 |
| CSTF2T | COL17A1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TLE5 | CSTF2T | psi-mi:“MI:0915”(physical association) | 0.560 |
| FAM168B | CSTF2T | psi-mi:“MI:0915”(physical association) | 0.560 |
| LASP1 | CSTF2T | psi-mi:“MI:0915”(physical association) | 0.560 |
| CSTF2T | AKAP8L | psi-mi:“MI:0915”(physical association) | 0.560 |
| CSTF2T | SMYD3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CTDSP1 | CSTF2T | psi-mi:“MI:0915”(physical association) | 0.560 |
| FOXI1 | CSTF2T | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (132): CSTF2T (Two-hybrid), UBQLN1 (Two-hybrid), CSTF2T (Affinity Capture-MS), UBQLN1 (Two-hybrid), CSTF1 (Co-fractionation), CSTF2T (Co-fractionation), CSTF2T (Co-fractionation), CSTF2T (Co-fractionation), CSTF2T (Co-fractionation), CSTF2T (Affinity Capture-Western), CSTF2T (Proximity Label-MS), GOLGA2 (Two-hybrid), CSTF2T (Affinity Capture-MS), CSTF2T (Affinity Capture-MS), CSTF2T (Affinity Capture-MS)
ESM2 similar proteins: A0A3Q7JC00, A0JM64, A0JNC2, A2VE44, A4IHD9, B2C6R6, B5DE09, B8BCZ8, E7F1H9, F4JT98, O09000, O57539, P78364, Q0WVM7, Q15596, Q17BA4, Q2NLB0, Q3TCX3, Q5RDA3, Q5TP13, Q5ZL54, Q61026, Q64028, Q6GP15, Q6K271, Q6NS15, Q6PEH8, Q71SY5, Q7XYY2, Q7ZVN7, Q80TM6, Q8C7E9, Q8CHY6, Q8HXM1, Q8IZL2, Q8VCB2, Q8W234, Q90WJ3, Q924H2, Q940A7
Diamond homologs: A0A0F6MY85, O02008, P19018, P33240, Q05AT9, Q16560, Q1LZH0, Q4KMD3, Q5RDA3, Q5U1W5, Q8BIQ5, Q8C7E9, Q8HXM1, Q8LPQ9, Q9D384, Q9H0L4, Q9SHZ6, A0A8M1NHK4, A0AV96, A0JM51, A4FV72, A4QUF0, A8WLV5, O01671, O04425, O43040, O43390, O60506, P28659, P86049, Q08BH5, Q08E07, Q0P4R6, Q0V9L3, Q10B98, Q14498, Q28HE9, Q2HJG2, Q2UK72, Q3UEB3
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 89 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Processing of Intronless Pre-mRNAs | 6 | 57.1× | 2e-07 |
| mRNA 3’-end processing | 7 | 23.0× | 2e-06 |
| RNA Polymerase II Transcription Termination | 6 | 22.0× | 2e-05 |
| mRNA Polyadenylation | 10 | 14.6× | 2e-07 |
| Dengue Virus-Host Interactions | 11 | 8.4× | 5e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mRNA processing | 9 | 8.8× | 5e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
93 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 89 |
| Likely benign | 3 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
93 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:51698941:G:A | donor_gain | 0.9400 |
| 10:51699080:T:TA | donor_gain | 0.9300 |
| 10:51695633:GAATT:G | donor_gain | 0.8900 |
| 10:51695634:AATTA:A | donor_gain | 0.8900 |
| 10:51699437:T:TA | donor_gain | 0.7700 |
| 10:51699456:A:C | donor_gain | 0.7300 |
| 10:51698970:T:TA | donor_gain | 0.6800 |
| 10:51696106:CA:C | acceptor_gain | 0.6300 |
| 10:51699466:AGTTG:A | donor_gain | 0.6200 |
| 10:51699449:T:TA | donor_gain | 0.6100 |
| 10:51698938:T:C | donor_gain | 0.5700 |
| 10:51699018:C:CT | donor_gain | 0.5300 |
| 10:51699019:T:TT | donor_gain | 0.5300 |
| 10:51696977:TAGAA:T | acceptor_gain | 0.4700 |
| 10:51698931:A:AC | donor_gain | 0.4700 |
| 10:51698932:C:CC | donor_gain | 0.4700 |
| 10:51698967:T:C | donor_gain | 0.4600 |
| 10:51699529:T:TA | donor_gain | 0.4400 |
| 10:51699433:A:T | donor_gain | 0.4300 |
| 10:51696606:CT:C | acceptor_gain | 0.3900 |
| 10:51696625:T:A | acceptor_gain | 0.3900 |
| 10:51699254:T:TA | donor_gain | 0.3800 |
| 10:51699470:G:A | donor_gain | 0.3800 |
| 10:51696107:A:C | acceptor_gain | 0.3600 |
| 10:51699309:C:CA | donor_gain | 0.3600 |
| 10:51699431:CCAA:C | donor_loss | 0.3600 |
| 10:51699432:CAACC:C | donor_loss | 0.3600 |
| 10:51699433:AAC:A | donor_loss | 0.3600 |
| 10:51699434:A:AC | donor_loss | 0.3600 |
| 10:51699435:C:A | donor_loss | 0.3600 |
AlphaMissense
3970 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:51697724:A:C | I609S | 1.000 |
| 10:51697724:A:G | I609T | 1.000 |
| 10:51697724:A:T | I609N | 1.000 |
| 10:51697727:T:G | Q608P | 1.000 |
| 10:51697732:C:A | K606N | 1.000 |
| 10:51697732:C:G | K606N | 1.000 |
| 10:51697736:A:G | L605S | 1.000 |
| 10:51697742:A:G | L603P | 1.000 |
| 10:51697745:A:C | I602S | 1.000 |
| 10:51697745:A:G | I602T | 1.000 |
| 10:51697745:A:T | I602N | 1.000 |
| 10:51697769:A:G | L594P | 1.000 |
| 10:51697769:A:T | L594Q | 1.000 |
| 10:51697793:A:G | L586P | 1.000 |
| 10:51697799:A:G | L584P | 1.000 |
| 10:51697802:A:T | V583D | 1.000 |
| 10:51697805:T:G | Q582P | 1.000 |
| 10:51697811:A:C | I580S | 1.000 |
| 10:51697811:A:G | I580T | 1.000 |
| 10:51697811:A:T | I580N | 1.000 |
| 10:51697814:A:C | L579W | 1.000 |
| 10:51697814:A:G | L579S | 1.000 |
| 10:51698978:A:G | L191P | 1.000 |
| 10:51698990:G:T | A187D | 1.000 |
| 10:51699027:C:G | A175P | 1.000 |
| 10:51699029:T:G | Q174P | 1.000 |
| 10:51699032:A:G | L173S | 1.000 |
| 10:51699035:A:G | L172P | 1.000 |
| 10:51699035:A:T | L172Q | 1.000 |
| 10:51699038:G:T | A171E | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000903918 (10:51697454 T>C,G), RS1000988670 (10:51700404 T>A), RS1001221354 (10:51695443 T>C), RS1001714948 (10:51695199 C>A,T), RS1003268596 (10:51698358 G>A), RS1004894485 (10:51696166 A>G), RS1004954611 (10:51699820 G>A), RS1005690901 (10:51695977 G>A), RS1006369170 (10:51701285 CTT>C), RS1006883167 (10:51699830 G>A), RS1007229921 (10:51700868 A>G), RS1007245838 (10:51695342 CTAAG>C), RS1007275470 (10:51695619 C>T), RS1007400733 (10:51696998 A>C), RS1007624675 (10:51701170 T>C)
Disease associations
OMIM: gene MIM:611968 | disease phenotypes: MIM:615436
GenCC curated gene-disease
Mondo (1): aortic aneurysm, familial thoracic 8 (MONDO:0014187)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002666_2 | Interferon alpha levels in systemic lupus erythematosus | 3.000000e-08 |
| GCST002668_5 | Mammographic density (non-dense area) | 3.000000e-06 |
| GCST007006_8 | Logical memory (delayed recall) in normal cognition | 2.000000e-08 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006517 | interferon alpha measurement |
| EFO:0005941 | mammographic density measurement |
| EFO:0006504 | non-dense area measurement |
| EFO:0004874 | memory performance |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
34 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression | 6 |
| trichostatin A | affects cotreatment, decreases expression | 3 |
| Air Pollutants | affects expression, increases abundance, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| sodium arsenite | decreases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| cyclic 3’,5’-uridine monophosphate | affects binding | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Cadmium | decreases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Enzyme Inhibitors | decreases activity, increases O-linked glycosylation | 1 |
| Iron | decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Manganese | increases abundance, increases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Ribonucleotides | affects binding | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Thiram | decreases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Vitamin D | affects expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): aortic aneurysm, familial thoracic 8