CSTF3-DT

Summary

CSTF3-DT (CSTF3 divergent transcript, HGNC:27882) is a long non-coding RNA gene on chromosome 11p13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27882
Approved symbol	CSTF3-DT
Name	CSTF3 divergent transcript
Location	11p13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000247151
Ensembl biotype	lncRNA
Entrez	338739
RNAcentral	URS000075A26E — lncRNA, 2062 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 30 — 29 lncRNA, 1 retained_intron

ENST00000500025, ENST00000531870, ENST00000647623, ENST00000827832, ENST00000827833, ENST00000827834, ENST00000827835, ENST00000827836, ENST00000827837, ENST00000827838, ENST00000827839, ENST00000827840, ENST00000827841, ENST00000827842, ENST00000827843, ENST00000827844, ENST00000827845, ENST00000827846, ENST00000827847, ENST00000827848, ENST00000827849, ENST00000827850, ENST00000827851, ENST00000827852, ENST00000827853, ENST00000827854, ENST00000827855, ENST00000827856, ENST00000827857, ENST00000827858

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000500025 — 4 exons

Exon	Start	End
ENSE00001975539	33161688	33161781
ENSE00001978362	33189933	33191598
ENSE00001984959	33188770	33188850
ENSE00001989579	33189368	33189557

Expression profiles

Bgee: expression breadth ubiquitous, 111 present calls, max score 74.77.

FANTOM5 (CAGE): breadth broad, TPM avg 0.4677 / max 25.0367, expressed in 261 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
113662	0.4677	261

Top tissues by expression

205 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.77	gold quality
bone marrow cell	CL:0002092	66.02	silver quality
ventricular zone	UBERON:0003053	63.39	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	62.96	gold quality
cortical plate	UBERON:0005343	60.46	silver quality
lower lobe of lung	UBERON:0008949	60.37	silver quality
ganglionic eminence	UBERON:0004023	59.72	gold quality
lymph node	UBERON:0000029	57.17	gold quality
monocyte	CL:0000576	56.97	gold quality
islet of Langerhans	UBERON:0000006	55.54	gold quality
stromal cell of endometrium	CL:0002255	53.83	silver quality
vermiform appendix	UBERON:0001154	53.79	gold quality
prefrontal cortex	UBERON:0000451	53.17	gold quality
testis	UBERON:0000473	52.91	gold quality
gall bladder	UBERON:0002110	52.70	gold quality
left testis	UBERON:0004533	52.70	gold quality
right testis	UBERON:0004534	52.10	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.93	gold quality
pancreas	UBERON:0001264	51.16	gold quality
caecum	UBERON:0001153	50.29	gold quality
granulocyte	CL:0000094	50.22	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	49.08	gold quality
tonsil	UBERON:0002372	48.58	gold quality
spinal cord	UBERON:0002240	48.09	gold quality
muscle of leg	UBERON:0001383	48.03	gold quality
blood	UBERON:0000178	47.39	gold quality
right atrium auricular region	UBERON:0006631	46.51	gold quality
gastrocnemius	UBERON:0001388	46.22	gold quality
spleen	UBERON:0002106	45.96	gold quality
putamen	UBERON:0001874	45.14	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.53

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.