CTXN3-AS1

Summary

CTXN3-AS1 (CTXN3 and CCDC192 antisense RNA 1, HGNC:59127) is a long non-coding RNA gene on chromosome 5q23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59127
Approved symbol	CTXN3-AS1
Name	CTXN3 and CCDC192 antisense RNA 1
Location	5q23.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248799
Ensembl biotype	lncRNA
Entrez	105379164

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000512352, ENST00000827053, ENST00000827054, ENST00000827055, ENST00000827056, ENST00000827057, ENST00000827058, ENST00000827059

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000512352 — 4 exons

Exon	Start	End
ENSE00002025571	127652253	127652361
ENSE00002044059	127663866	127664029
ENSE00002047818	127651693	127651821
ENSE00002075514	127663624	127663768

Expression profiles

Bgee: expression breadth broad, 55 present calls, max score 65.95.

Top tissues by expression

55 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
skeletal muscle tissue	UBERON:0001134	65.95	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.46	gold quality
muscle of leg	UBERON:0001383	58.40	gold quality
endometrium	UBERON:0001295	56.68	silver quality
gastrocnemius	UBERON:0001388	55.66	gold quality
monocyte	CL:0000576	55.37	gold quality
cortex of kidney	UBERON:0001225	55.08	gold quality
superior frontal gyrus	UBERON:0002661	53.61	gold quality
prefrontal cortex	UBERON:0000451	52.86	gold quality
blood	UBERON:0000178	52.01	silver quality
Brodmann (1909) area 9	UBERON:0013540	49.03	gold quality
frontal cortex	UBERON:0001870	48.13	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	47.94	gold quality
pituitary gland	UBERON:0000007	47.60	gold quality
primary visual cortex	UBERON:0002436	47.54	silver quality
prostate gland	UBERON:0002367	46.41	gold quality
right frontal lobe	UBERON:0002810	46.29	gold quality
fundus of stomach	UBERON:0001160	46.23	gold quality
brain	UBERON:0000955	46.08	gold quality
cerebellar cortex	UBERON:0002129	45.22	gold quality
body of pancreas	UBERON:0001150	45.18	silver quality
cerebellar hemisphere	UBERON:0002245	44.86	gold quality
anterior cingulate cortex	UBERON:0009835	44.15	gold quality
heart left ventricle	UBERON:0002084	43.22	silver quality
body of stomach	UBERON:0001161	43.18	silver quality
substantia nigra	UBERON:0002038	42.80	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	42.63	gold quality
caudate nucleus	UBERON:0001873	42.44	gold quality
heart	UBERON:0000948	42.24	silver quality
hypothalamus	UBERON:0001898	42.12	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.