CUBN
geneOn this page
Also known as IFCRgp280
Summary
CUBN (cubilin, HGNC:2548) is a protein-coding gene on chromosome 10p13, encoding Cubilin (O60494). Endocytic receptor which plays a role in lipoprotein, vitamin and iron metabolism by facilitating their uptake.
Cubilin (CUBN) acts as a receptor for intrinsic factor-vitamin B12 complexes. The role of receptor is supported by the presence of 27 CUB domains. Cubulin is located within the epithelium of intestine and kidney. Mutations in CUBN may play a role in autosomal recessive megaloblastic anemia.
Source: NCBI Gene 8029 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Imerslund-Grasbeck syndrome type 1 (Definitive, GenCC) — +2 more curated relationships
- GWAS associations: 50
- Clinical variants (ClinVar): 2,582 total — 63 pathogenic, 110 likely-pathogenic
- Phenotypes (HPO): 40
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_001081
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2548 |
| Approved symbol | CUBN |
| Name | cubilin |
| Location | 10p13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | IFCR, gp280 |
| Ensembl gene | ENSG00000107611 |
| Ensembl biotype | protein_coding |
| OMIM | 602997 |
| Entrez | 8029 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 3 protein_coding_CDS_not_defined, 2 retained_intron, 2 protein_coding
ENST00000377823, ENST00000377833, ENST00000433666, ENST00000438254, ENST00000648092, ENST00000649135, ENST00000649933
RefSeq mRNA: 1 — MANE Select: NM_001081
NM_001081
CCDS: CCDS7113
Canonical transcript exons
ENST00000377833 — 67 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000503895 | 16888417 | 16888566 |
| ENSE00000614424 | 16876897 | 16877097 |
| ENSE00000614425 | 16874374 | 16874503 |
| ENSE00000614426 | 16869636 | 16869853 |
| ENSE00000692563 | 16890371 | 16890527 |
| ENSE00000692707 | 17088164 | 17088345 |
| ENSE00000692708 | 17100005 | 17100239 |
| ENSE00000692710 | 17103125 | 17103237 |
| ENSE00000692716 | 17109640 | 17109735 |
| ENSE00000692719 | 17114027 | 17114189 |
| ENSE00000692724 | 17123588 | 17123689 |
| ENSE00000692728 | 17129121 | 17129250 |
| ENSE00000815979 | 17041033 | 17041220 |
| ENSE00000815992 | 17127829 | 17127924 |
| ENSE00000925926 | 16831252 | 16831417 |
| ENSE00000925927 | 16835014 | 16835195 |
| ENSE00000925929 | 16840330 | 16840535 |
| ENSE00000925931 | 16898996 | 16899183 |
| ENSE00000925932 | 16900625 | 16900850 |
| ENSE00000925933 | 16901338 | 16901459 |
| ENSE00000925934 | 16903966 | 16904115 |
| ENSE00000925944 | 17104419 | 17104605 |
| ENSE00000925947 | 17105457 | 17105575 |
| ENSE00000925951 | 17110919 | 17111050 |
| ENSE00000925957 | 17115471 | 17115597 |
| ENSE00000925961 | 17122795 | 17122898 |
| ENSE00000985435 | 17126761 | 17126799 |
| ENSE00000985437 | 17084271 | 17084461 |
| ENSE00000985438 | 17071827 | 17071971 |
| ENSE00000985439 | 17071426 | 17071604 |
| ENSE00000985440 | 17068605 | 17068770 |
| ENSE00000985441 | 17068064 | 17068280 |
| ENSE00000985442 | 17065508 | 17065638 |
| ENSE00000985443 | 17047414 | 17047603 |
| ENSE00000985444 | 17045934 | 17046094 |
| ENSE00000985445 | 17045007 | 17045188 |
| ENSE00000985447 | 17019833 | 17019983 |
| ENSE00000985448 | 16990334 | 16990515 |
| ENSE00000985449 | 16984105 | 16984279 |
| ENSE00000985450 | 16982484 | 16982653 |
| ENSE00000985451 | 16954389 | 16954548 |
| ENSE00000985452 | 16952276 | 16952389 |
| ENSE00000985453 | 16950001 | 16950111 |
| ENSE00000985454 | 16948478 | 16948606 |
| ENSE00000985456 | 16940032 | 16940237 |
| ENSE00000985457 | 16938963 | 16939147 |
| ENSE00000985458 | 16937592 | 16937784 |
| ENSE00000985459 | 16933087 | 16933284 |
| ENSE00000985460 | 16928157 | 16928303 |
| ENSE00000985463 | 16851235 | 16851443 |
| ENSE00001098716 | 16925584 | 16925774 |
| ENSE00001164027 | 16836235 | 16836382 |
| ENSE00001164296 | 17085597 | 17085759 |
| ENSE00001192896 | 16947235 | 16947367 |
| ENSE00001283594 | 17043827 | 17043983 |
| ENSE00001475273 | 16823966 | 16825082 |
| ENSE00001475420 | 17129644 | 17129811 |
| ENSE00001635703 | 16915821 | 16916030 |
| ENSE00001651724 | 16913811 | 16913992 |
| ENSE00001715158 | 16915032 | 16915172 |
| ENSE00001725876 | 16918622 | 16918800 |
| ENSE00001738727 | 16840885 | 16841047 |
| ENSE00001745825 | 16919963 | 16920137 |
| ENSE00001795343 | 16907508 | 16907679 |
| ENSE00001796817 | 16906203 | 16906409 |
| ENSE00001799112 | 16925241 | 16925424 |
| ENSE00001800480 | 16828805 | 16829040 |
Expression profiles
Bgee: expression breadth ubiquitous, 188 present calls, max score 95.36.
FANTOM5 (CAGE): breadth broad, TPM avg 1.0096 / max 255.2028, expressed in 221 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 108481 | 0.5189 | 63 |
| 108472 | 0.2231 | 121 |
| 108471 | 0.0803 | 24 |
| 108482 | 0.0750 | 25 |
| 205736 | 0.0401 | 16 |
| 108484 | 0.0399 | 22 |
| 108485 | 0.0172 | 7 |
| 108483 | 0.0151 | 10 |
Top tissues by expression
290 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| adult organism | UBERON:0007023 | 95.36 | gold quality |
| nephron tubule | UBERON:0001231 | 94.27 | gold quality |
| kidney epithelium | UBERON:0004819 | 92.57 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 91.78 | gold quality |
| kidney | UBERON:0002113 | 90.84 | gold quality |
| renal glomerulus | UBERON:0000074 | 89.24 | gold quality |
| renal medulla | UBERON:0000362 | 89.11 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 88.59 | gold quality |
| cortex of kidney | UBERON:0001225 | 86.35 | gold quality |
| sperm | CL:0000019 | 83.05 | gold quality |
| oocyte | CL:0000023 | 82.17 | gold quality |
| male germ cell | CL:0000015 | 82.15 | gold quality |
| metanephros | UBERON:0000081 | 81.82 | gold quality |
| right uterine tube | UBERON:0001302 | 81.16 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 80.24 | gold quality |
| secondary oocyte | CL:0000655 | 77.68 | silver quality |
| tibial nerve | UBERON:0001323 | 76.39 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 75.20 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 74.79 | gold quality |
| sural nerve | UBERON:0015488 | 74.46 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 73.86 | gold quality |
| thyroid gland | UBERON:0002046 | 73.69 | gold quality |
| metanephros cortex | UBERON:0010533 | 73.55 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 73.41 | gold quality |
| right testis | UBERON:0004534 | 73.30 | gold quality |
| calcaneal tendon | UBERON:0003701 | 73.13 | gold quality |
| small intestine | UBERON:0002108 | 72.21 | gold quality |
| left testis | UBERON:0004533 | 71.54 | gold quality |
| olfactory bulb | UBERON:0002264 | 71.36 | gold quality |
| type B pancreatic cell | CL:0000169 | 71.17 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-131882 | yes | 5820.43 |
| E-CURD-119 | yes | 5451.71 |
| E-HCAD-10 | yes | 40.25 |
| E-MTAB-7008 | yes | 32.56 |
| E-ANND-3 | yes | 7.21 |
| E-CURD-135 | no | 2266.59 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): PPARA, YBX3
miRNA regulators (miRDB)
36 targeting CUBN, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-512-3P | 99.97 | 67.35 | 1049 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-130B-5P | 99.83 | 68.50 | 1888 |
| HSA-MIR-944 | 99.82 | 70.85 | 3042 |
| HSA-MIR-33A-3P | 99.70 | 70.27 | 3362 |
| HSA-MIR-4677-5P | 99.70 | 70.09 | 1940 |
| HSA-MIR-3177-5P | 99.65 | 70.38 | 1174 |
| HSA-MIR-4437 | 99.52 | 65.29 | 1266 |
| HSA-MIR-543 | 99.52 | 69.03 | 2595 |
| HSA-MIR-8064 | 99.45 | 66.92 | 875 |
| HSA-MIR-8077 | 99.17 | 66.67 | 862 |
| HSA-MIR-3619-5P | 99.00 | 68.87 | 2308 |
| HSA-MIR-29B-1-5P | 98.86 | 68.35 | 1364 |
| HSA-MIR-6755-3P | 98.61 | 66.90 | 834 |
| HSA-MIR-660-3P | 98.14 | 66.04 | 1434 |
| HSA-MIR-6742-3P | 97.95 | 64.50 | 1490 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Comparative analysis of cobalamin binding kinetics (PMID:11788601)
- Megalin and cubilin: multifunctional endocytic receptors. A review. (PMID:11994745)
- proteinuria was due to the lack of cubilin function needed for tubular reabsorption of some, but not all, proteins of the primary urine. (PMID:12687456)
- cubilin and amnionless are subunits of a novel cubilin/amnionless (cubam) complex (PMID:14576052)
- the early cubilin expression and its function in protein and cholesterol uptake suggest an important role for cubilin in the development of the peri-implantation embryo (PMID:15616221)
- Formation of the cubilin recognition site on intrinsic factor (IF) is caused by assembly of two distant domains, which allows the saturated IF protein to be recognized by the receptor. (PMID:15736970)
- interactions of COBALAMIN BINDING proteins with a number of ligands (PMID:17487979)
- This review summarizes recent data on the biological function of cubilin and focuses on its implication in embryonic nutrition and central nervous system malformations. (PMID:17979745)
- light chain endocytosis is predominantly mediated by the megalin-cubilin tandem endocytic receptor and identify endocytosis as a key step in light chain cytotoxicity. (PMID:18448595)
- results show different expression patterns of megalin and cubulin in calculous gallbladders and acalculous gallbladders suggesting an association with gallstone formation and implying a putative role of the two proteins in cholesterol endocytosis (PMID:18791690)
- An association study of 45 folate-related genes in spina bifida: Involvement of cubilin (PMID:19161160)
- Aberrant shedding of megalin and cubilin may contribute to albuminuria in diabetes and to deficiency states of important vitamins and hormones. (PMID:19366958)
- crystal structure of the complex between IF-Cbl and the cubilin IF-Cbl-binding-region (CUB(5-8)) determined at 3.3 A resolution (PMID:20237569)
- cubilin gene polymorphisms have an influence on 25(OH)D3 and 1,25(OH)2D3 plasma levels in type 1 diabetes patients (PMID:20398757)
- There is a missense CUBN variant that associates with levels of albuminuria in both the general population and in individuals with diabetes. (PMID:21355061)
- megalin and cubilin are involved in the metabolism of vitamin D by reabsorbing vitamin D binding protein; dysfunction of these receptors is likely to be associated with the development of vitamin D deficiency in patients with chronic kidney disease (PMID:21595846)
- amnionless is essential for the correct luminal expression of cubilin in humans. (PMID:21750092)
- These data suggest that CUBN is not involved in cleft lip or palate onset in the investigated Italian population (PMID:21781439)
- A novel 1-bp homozygous deletion of the cubilin was found to be the cause of proteinuria with nephrotic syndrome. (PMID:21903995)
- used immunocytochemistry and reverse transcription-polymerase chain reaction on laser-captured glomeruli to demonstrate synthesis and expression of cubilin in glomerular podocytes (PMID:22337902)
- Expression of megalin and cubilin is decreased during experimental endotoxemia, which may contribute to an increase in urine levels of albumin during acute renal failure. (PMID:22437417)
- CUBN rs7918972 as a novel risk variant for renal function loss (PMID:22574174)
- Single nucleotide polymorphisms in cubilin gene is associated with iron overload. (PMID:22761678)
- Our genetic screening of 154 families of patients with inherited cobalamin malabsorption revealed population-specific mutations, mutational hotspots, and functionally distinct regions in the three causal genes: CUBN, AMN, and GIF. (PMID:22929189)
- The p.I1e2984Val variant of cubulin is part of a larger haplotype in European populations that is almost absent in West Africans. (PMID:23114252)
- Data suggest that endodermal layer of yolk sac and syncytiotrophoblast/cytotrophoblast cells of placental villi express cubilin mRNA/protein; expression of cubilin mRNA/protein is up-regulated as gestation/placentation progresses. (PMID:23978537)
- MA is associated with CVD irrespective of the presence of the CUBN risk allele. These results challenge the concept that albuminuria in the setting of this mutation is benign. (PMID:24052458)
- LOS treatment decreased microalbuminuria induced by Cd apparently through a cubilin receptor-dependent mechanism but independent of megalin. (PMID:24093454)
- Cubilin haploinsufficiency leads to reduced renal proximal tubular uptake of albumin and apolipoprotein (apo)A-I, significantly increasing urinary loss of albumin and apoA-I. (PMID:24357674)
- The variant rs11254363 of the CUBN gene was associated with a decreased risk of developing congenital heart disease in Han Chinese populations (PMID:24533076)
- predisposition to multibacillary leprosy in Vietnam is associated with CUBN and NEBL common variants in the chromosome 10p13 linkage region (PMID:24563210)
- CUBN was associated with albuminuria in type 2 diabetes patients. (PMID:26631737)
- The CUBN haplotypes were associated with an altered gastric cancer risk. (PMID:26959381)
- CUBN SNP rs1801239 (I2984V), previously associated with albuminuria, was significantly associated with T2D-ESRD in blacks. (PMID:27197912)
- Study identified CUBN as a marker for risk stratification of patients with renal cell carcinoma (RCC). Lack of CUBN expression was significantly associated with early disease progression and poor patient outcome, independent of T-stage, Fuhrman grade and nodal status. Owing to a highly RCC-specific expression profile, CUBN expression also has a potential role in clinical cancer differential diagnostics. (PMID:28052770)
- Tumoral expression of cubilin is a positive predictive marker for treatment of metastatic renal cell cancer patients with sunitinib and sorafenib. (PMID:28260162)
- in teens with positive recto-vaginal group B streptococcus colonization, placental mRNA expression of cubilin is lower compared to those who tested negative for this infection (PMID:28622535)
- Cubilin is involved in 25(OH) vitamin D uptake by adipocytes. (PMID:29186386)
- Study shows that cubilin mutations (novel and some previously reported) and all previously reported amnionless missense mutations resulted in endoplasmic reticulum retention and completely inhibited amnionless-dependent plasma membrane expression of cubilin. (PMID:29402915)
- Data indicate the crystal structure of amnionless (AMN) in complex with the amino-terminal region of intrinsic factor-cobalamin receptor (cubilin). (PMID:30523278)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cubn | ENSDARG00000087013 |
| mus_musculus | Cubn | ENSMUSG00000026726 |
| rattus_norvegicus | Cubn | ENSRNOG00000029047 |
| drosophila_melanogaster | tok | FBGN0004885 |
| drosophila_melanogaster | Cubn2 | FBGN0259140 |
Paralogs (35): NRXN3 (ENSG00000021645), TLL1 (ENSG00000038295), CP (ENSG00000047457), DCBLD2 (ENSG00000057019), HEPH (ENSG00000089472), TLL2 (ENSG00000095587), NRP1 (ENSG00000099250), PCOLCE (ENSG00000106333), CNTNAP3 (ENSG00000106714), CNTNAP1 (ENSG00000108797), NRXN2 (ENSG00000110076), MEP1A (ENSG00000112818), NRP2 (ENSG00000118257), CUZD1 (ENSG00000138161), MFGE8 (ENSG00000140545), MEP1B (ENSG00000141434), PDGFC (ENSG00000145431), CNTNAP4 (ENSG00000152910), CNTNAP3B (ENSG00000154529), CNTNAP5 (ENSG00000155052), CDCP2 (ENSG00000157211), PCOLCE2 (ENSG00000163710), EDIL3 (ENSG00000164176), NETO1 (ENSG00000166342), BMP1 (ENSG00000168487), PDGFD (ENSG00000170962), NETO2 (ENSG00000171208), CNTNAP2 (ENSG00000174469), NRXN1 (ENSG00000179915), HEPHL1 (ENSG00000181333), F8 (ENSG00000185010), ASTL (ENSG00000188886), F5 (ENSG00000198734), MFRP (ENSG00000235718), CNTNAP3C (ENSG00000283378)
Protein
Protein identifiers
Cubilin — O60494 (reviewed: O60494)
Alternative names: 460 kDa receptor, Intestinal intrinsic factor receptor, Intrinsic factor-cobalamin receptor, Intrinsic factor-vitamin B12 receptor
All UniProt accessions (2): O60494, H7C480
UniProt curated annotations — full annotation on UniProt →
Function. Endocytic receptor which plays a role in lipoprotein, vitamin and iron metabolism by facilitating their uptake. Acts together with LRP2 to mediate endocytosis of high-density lipoproteins, GC, hemoglobin, ALB, TF and SCGB1A1. Acts together with AMN to mediate endocytosis of the CBLIF-cobalamin complex. Binds to ALB, MB, Kappa and lambda-light chains, TF, hemoglobin, GC, SCGB1A1, APOA1, high density lipoprotein, and the CBLIF-cobalamin complex. Ligand binding requires calcium. Serves as important transporter in several absorptive epithelia, including intestine, renal proximal tubules and embryonic yolk sac. May play an important role in the development of the peri-implantation embryo through internalization of APOA1 and cholesterol. Binds to LGALS3 at the maternal-fetal interface.
Subunit / interactions. Interacts with AMN. Component of the cubam complex composed of one CUBN trimer and one AMN chain. The cubam complex can dimerize. Interacts with LRP2 in a dual-receptor complex in a calcium-dependent manner. Found in a complex with PID1/PCLI1, LRP1 and CUBNI. Interacts with LRP1 and PID1/PCLI1.
Subcellular location. Apical cell membrane. Cell membrane. Membrane. Coated pit. Endosome. Lysosome membrane.
Tissue specificity. Detected in kidney cortex (at protein level). Expressed in kidney proximal tubule cells, placenta, visceral yolk-sac cells and in absorptive intestinal cells. Expressed in the epithelium of intestine and kidney.
Post-translational modifications. The precursor is cleaved by a trans-Golgi proteinase furin, removing a propeptide. N-glycosylated.
Disease relevance. Imerslund-Grasbeck syndrome 1 (IGS1) [MIM:261100] A form of Imerslund-Grasbeck syndrome, a rare autosomal recessive disorder characterized by vitamin B12 deficiency commonly resulting in megaloblastic anemia, which is responsive to parenteral vitamin B12 therapy and appears in infancy or early childhood. Clinical manifestations include failure to thrive, infections and neurological damage. Mild proteinuria, with no signs of kidney disease, is present in about half of the patients. The disease is caused by variants affecting the gene represented in this entry. Proteinuria, chronic benign (PROCHOB) [MIM:618884] An autosomal recessive condition characterized by isolated, non-progressive proteinuria in absence of renal disease and hypertension. Onset of proteinuria is in the first decade of life. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The CUB domains 5 to 8 mediate binding to CBLIF and ALB. CUB domains 1 and 2 mediate interaction with LRP2. The cubam complex is composed of a 400 Angstrom long stem and a globular crown region. The stem region is probably formed by AMN and the CUBN N-terminal region, including the EGF-like domains. The crown is probably formed by the CUBN CUB domains.
RefSeq proteins (1): NP_001072* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000152 | EGF-type_Asp/Asn_hydroxyl_site | PTM |
| IPR000742 | EGF | Domain |
| IPR000859 | CUB_dom | Domain |
| IPR001881 | EGF-like_Ca-bd_dom | Domain |
| IPR009030 | Growth_fac_rcpt_cys_sf | Homologous_superfamily |
| IPR018097 | EGF_Ca-bd_CS | Conserved_site |
| IPR024731 | NELL2-like_EGF | Domain |
| IPR035914 | Sperma_CUB_dom_sf | Homologous_superfamily |
| IPR049883 | NOTCH1_EGF-like | Domain |
Pfam: PF00008, PF00431, PF07645, PF12947
UniProt features (281 total): disulfide bond 66, sequence variant 64, glycosylation site 47, strand 36, domain 34, binding site 19, turn 4, helix 3, sequence conflict 2, signal peptide 1, propeptide 1, chain 1, region of interest 1, site 1, modified residue 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6GJE | X-RAY DIFFRACTION | 2.3 |
| 3KQ4 | X-RAY DIFFRACTION | 3.3 |
Predicted structure (AlphaFold)
No AlphaFold model available for O60494 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 35–36 (cleavage; by furin)
Ligand- & substrate-binding residues (19): 980; 988; 1027; 1029; 1030; 1096; 1105; 1146; 1148; 1149; 1213; 1221 …
Post-translational modifications (1): 3008
Disulfide bonds (66): 136–147, 141–156, 158–167, 174–190, 184–199, 201–210, 267–280, 274–289, 292–303, 353–366, 360–376, 399–409, 404–418, 420–429, 436–447, 441–456, 458–467, 474–500, 527–549, 590–616 …
Glycosylation sites (47): 3295, 3357, 3430, 3457, 3533, 3576, 105, 428, 482, 711, 749, 781, 857, 957, 984, 1092, 1168, 1217, 1285, 1307 …
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-196791 | Vitamin D (calciferol) metabolism |
| R-HSA-3359462 | Defective AMN causes MGA1 |
| R-HSA-3359463 | Defective CUBN causes MGA1 |
| R-HSA-8964011 | HDL clearance |
| R-HSA-9758881 | Uptake of dietary cobalamins into enterocytes |
MSigDB gene sets: 243 (showing top):
BROWNE_HCMV_INFECTION_30MIN_DN, GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_UP, SHEPARD_BMYB_MORPHOLINO_UP, GOCC_VACUOLAR_MEMBRANE, GOCC_CELL_SURFACE, GOBP_VESICLE_MEDIATED_TRANSPORT, BROWNE_HCMV_INFECTION_48HR_DN, TCF4_Q5, chr10p13, GOBP_COBALAMIN_METABOLIC_PROCESS, GOBP_TETRAPYRROLE_METABOLIC_PROCESS, GOBP_VITAMIN_TRANSPORT, GOBP_LIPID_METABOLIC_PROCESS, GOBP_LIPOPROTEIN_LOCALIZATION, GOCC_APICAL_PLASMA_MEMBRANE
GO Biological Process (12): tissue homeostasis (GO:0001894), receptor-mediated endocytosis (GO:0006898), cholesterol metabolic process (GO:0008203), cobalamin metabolic process (GO:0009235), response to bacterium (GO:0009617), cobalamin transport (GO:0015889), lipoprotein transport (GO:0042953), establishment of localization in cell (GO:0051649), lipid metabolic process (GO:0006629), endocytosis (GO:0006897), steroid metabolic process (GO:0008202), protein transport (GO:0015031)
GO Molecular Function (7): calcium ion binding (GO:0005509), cobalamin binding (GO:0031419), signaling receptor activity (GO:0038023), cargo receptor activity (GO:0038024), protein homodimerization activity (GO:0042803), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (21): lysosomal membrane (GO:0005765), endosome (GO:0005768), endoplasmic reticulum (GO:0005783), Golgi apparatus (GO:0005794), cytosol (GO:0005829), plasma membrane (GO:0005886), clathrin-coated pit (GO:0005905), membrane (GO:0016020), apical plasma membrane (GO:0016324), endocytic vesicle (GO:0030139), extrinsic component of external side of plasma membrane (GO:0031232), brush border membrane (GO:0031526), microvillus membrane (GO:0031528), lysosomal lumen (GO:0043202), signaling receptor complex (GO:0043235), extracellular exosome (GO:0070062), cytoplasm (GO:0005737), lysosome (GO:0005764), brush border (GO:0005903), cell projection membrane (GO:0031253), apical part of cell (GO:0045177)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Defects in cobalamin (B12) metabolism | 2 |
| Metabolism of steroids | 1 |
| Plasma lipoprotein clearance | 1 |
| Cobalamin (Cbl, vitamin B12) transport and metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| endomembrane system | 4 |
| cytoplasm | 3 |
| cellular anatomical structure | 3 |
| vesicle-mediated transport | 2 |
| lysosome | 2 |
| cytoplasmic vesicle | 2 |
| intracellular membrane-bounded organelle | 2 |
| membrane | 2 |
| apical part of cell | 2 |
| plasma membrane region | 2 |
| cell projection membrane | 2 |
| microvillus | 2 |
| multicellular organismal-level homeostasis | 1 |
| anatomical structure homeostasis | 1 |
| endocytosis | 1 |
| sterol metabolic process | 1 |
| secondary alcohol metabolic process | 1 |
| tetrapyrrole metabolic process | 1 |
| response to other organism | 1 |
| vitamin transport | 1 |
| nitrogen compound transport | 1 |
| protein transport | 1 |
| lipoprotein localization | 1 |
| establishment of localization | 1 |
| cellular localization | 1 |
| primary metabolic process | 1 |
| vesicle budding from membrane | 1 |
| membrane invagination | 1 |
| import into cell | 1 |
| lipid metabolic process | 1 |
| transport | 1 |
| intracellular protein localization | 1 |
| establishment of protein localization | 1 |
| metal ion binding | 1 |
| vitamin binding | 1 |
| tetrapyrrole binding | 1 |
| heterocyclic compound binding | 1 |
| molecular transducer activity | 1 |
| molecular_function | 1 |
| molecular adaptor activity | 1 |
Protein interactions and networks
STRING
1174 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CUBN | AMN | Q9BXJ7 | 999 |
| CUBN | LRP2 | P98164 | 999 |
| CUBN | ALB | P02768 | 992 |
| CUBN | CBLIF | P27352 | 984 |
| CUBN | APOA1 | P02647 | 972 |
| CUBN | GC | P02774 | 970 |
| CUBN | CLCN5 | P51795 | 868 |
| CUBN | SLC9A3 | P48764 | 835 |
| CUBN | DAB2 | P98082 | 811 |
| CUBN | CBL | P22681 | 806 |
| CUBN | HP | P00737 | 747 |
| CUBN | TCN2 | P20062 | 706 |
| CUBN | AMBP | P00977 | 704 |
| CUBN | TCN1 | P20061 | 671 |
| CUBN | PLB1 | Q6P1J6 | 669 |
IntAct
9 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| AMN | CUBN | psi-mi:“MI:0407”(direct interaction) | 0.600 |
| AMN | CUBN | psi-mi:“MI:0915”(physical association) | 0.600 |
| CBLIF | CUBN | psi-mi:“MI:0407”(direct interaction) | 0.560 |
| CUBN | CUBN | psi-mi:“MI:0915”(physical association) | 0.400 |
| LMP2 | WWP2 | psi-mi:“MI:0914”(association) | 0.350 |
| RRP1B | YY2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (10): CUBN (Affinity Capture-Western), GIF (Reconstituted Complex), CUBN (Reconstituted Complex), CUBN (Affinity Capture-MS), CUBN (Affinity Capture-MS), CUBN (Reconstituted Complex), CUBN (Protein-peptide), LRP1 (Affinity Capture-Western), PID1 (Affinity Capture-Western), CUBN (Two-hybrid)
ESM2 similar proteins: A0A1D5NSM8, A0A1L8HYT7, A2AJX4, B1AUH1, B3DK56, B3EX02, E2RK30, E9PZ36, F1RWC3, F8W3R9, O54767, O60494, O70244, P08922, P08F94, P20239, P47984, P56677, P79953, P86091, P97435, P98072, P98073, P98074, Q0IIH7, Q0V8T3, Q0V8T5, Q2QI47, Q3UZ09, Q5VYJ5, Q63132, Q66TN7, Q6DIV5, Q6YI48, Q769J6, Q78DX7, Q7M761, Q7RTY7, Q7RTY8, Q7RTZ1
Diamond homologs: A0A0C5PRQ1, A0FKN6, A0JNA2, A8Q2D1, C6K2K4, C9D7R3, D2KBH9, D5FM34, D5FM37, D5FM38, K7Z9Q9, O16977, O17264, O35276, O35375, O43897, O57382, O57460, O60462, O60494, O70244, P07584, P0DM61, P0DM62, P13497, P28825, P28826, P31579, P31580, P31581, P42674, P55112, P55113, P55114, P55115, P84748, P91828, P98060, P98061, P98068
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
2582 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 63 |
| Likely pathogenic | 110 |
| Uncertain significance | 1249 |
| Likely benign | 653 |
| Benign | 246 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1072126 | NM_001081.4(CUBN):c.7013del (p.Gly2338fs) | Pathogenic |
| 1074985 | NM_001081.4(CUBN):c.7051G>T (p.Gly2351Ter) | Pathogenic |
| 1075676 | NM_001081.4(CUBN):c.2191_2192del (p.Thr731fs) | Pathogenic |
| 1076401 | NM_001081.4(CUBN):c.1892del (p.Thr631fs) | Pathogenic |
| 1179177 | NM_001081.4(CUBN):c.796G>T (p.Glu266Ter) | Pathogenic |
| 1322176 | NM_001081.4(CUBN):c.10233G>A (p.Trp3411Ter) | Pathogenic |
| 1427549 | NM_001081.4(CUBN):c.8684_8687del (p.Ser2895fs) | Pathogenic |
| 1444492 | NM_001081.4(CUBN):c.424C>T (p.Gln142Ter) | Pathogenic |
| 1444519 | NM_001081.4(CUBN):c.7802G>A (p.Trp2601Ter) | Pathogenic |
| 1705570 | NM_001081.4(CUBN):c.4689T>A (p.Cys1563Ter) | Pathogenic |
| 1992848 | NM_001081.4(CUBN):c.9783del (p.Thr3261_Leu3262insTer) | Pathogenic |
| 2009822 | NM_001081.4(CUBN):c.8049del (p.Lys2683fs) | Pathogenic |
| 2032699 | NM_001081.4(CUBN):c.5701G>T (p.Glu1901Ter) | Pathogenic |
| 2104999 | NM_001081.4(CUBN):c.794dup (p.Asp265fs) | Pathogenic |
| 2193032 | NM_001081.4(CUBN):c.10557_10558del (p.Gly3520fs) | Pathogenic |
| 2423663 | NC_000010.10:g.(?16961942)(16970322_?)del | Pathogenic |
| 2628983 | NM_001081.4(CUBN):c.8355del (p.Asp2786fs) | Pathogenic |
| 2718935 | NM_001081.4(CUBN):c.10520C>A (p.Ser3507Ter) | Pathogenic |
| 2721529 | NM_001081.4(CUBN):c.5856del (p.Lys1954fs) | Pathogenic |
| 2731233 | NM_001081.4(CUBN):c.3138del (p.Ala1047fs) | Pathogenic |
| 2736019 | NM_001081.4(CUBN):c.6118C>T (p.Arg2040Ter) | Pathogenic |
| 2793997 | NM_001081.4(CUBN):c.7145_7146del (p.Asp2381_Phe2382insTer) | Pathogenic |
| 2859831 | NM_001081.4(CUBN):c.3578G>A (p.Trp1193Ter) | Pathogenic |
| 2958744 | NM_001081.4(CUBN):c.8165del (p.Pro2722fs) | Pathogenic |
| 30291 | NM_001081.4(CUBN):c.3329+1G>T | Pathogenic |
| 3220910 | NM_001081.4(CUBN):c.591C>G (p.Tyr197Ter) | Pathogenic |
| 3235994 | NM_001081.4(CUBN):c.4042G>T (p.Gly1348Ter) | Pathogenic |
| 3235995 | NM_001081.4(CUBN):c.6297_6298insT (p.Arg2100Ter) | Pathogenic |
| 3244830 | NC_000010.10:g.(?17151619)(17157616_?)del | Pathogenic |
| 3255214 | NM_001081.4(CUBN):c.10009_10012del (p.Leu3337fs) | Pathogenic |
SpliceAI
10556 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:16828799:A:AC | donor_gain | 1.0000 |
| 10:16828800:C:CC | donor_gain | 1.0000 |
| 10:16828803:A:AC | donor_gain | 1.0000 |
| 10:16828803:ACGC:A | donor_gain | 1.0000 |
| 10:16828804:C:CA | donor_gain | 1.0000 |
| 10:16828804:CG:C | donor_gain | 1.0000 |
| 10:16828804:CGCC:C | donor_gain | 1.0000 |
| 10:16828804:CGCCT:C | donor_gain | 1.0000 |
| 10:16829036:ACATC:A | acceptor_gain | 1.0000 |
| 10:16829037:CATC:C | acceptor_gain | 1.0000 |
| 10:16829037:CATCC:C | acceptor_gain | 1.0000 |
| 10:16829038:ATC:A | acceptor_gain | 1.0000 |
| 10:16829038:ATCCT:A | acceptor_loss | 1.0000 |
| 10:16829039:TC:T | acceptor_gain | 1.0000 |
| 10:16829040:CC:C | acceptor_gain | 1.0000 |
| 10:16829040:CCT:C | acceptor_loss | 1.0000 |
| 10:16829041:C:CC | acceptor_gain | 1.0000 |
| 10:16829042:T:A | acceptor_loss | 1.0000 |
| 10:16835197:T:C | acceptor_gain | 1.0000 |
| 10:16840883:A:AC | donor_gain | 1.0000 |
| 10:16840883:ACTGT:A | donor_gain | 1.0000 |
| 10:16840884:C:CT | donor_gain | 1.0000 |
| 10:16840884:CTGTC:C | donor_gain | 1.0000 |
| 10:16841048:C:CC | acceptor_gain | 1.0000 |
| 10:16869630:TCTTA:T | donor_loss | 1.0000 |
| 10:16869631:CTTA:C | donor_loss | 1.0000 |
| 10:16869632:TTA:T | donor_loss | 1.0000 |
| 10:16869633:TACCC:T | donor_loss | 1.0000 |
| 10:16869634:A:AC | donor_gain | 1.0000 |
| 10:16869635:C:CC | donor_gain | 1.0000 |
AlphaMissense
23998 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:16913904:C:A | W2480C | 0.995 |
| 10:16913904:C:G | W2480C | 0.995 |
| 10:16982565:C:A | W1538C | 0.995 |
| 10:16982565:C:G | W1538C | 0.995 |
| 10:17104436:C:G | C467S | 0.995 |
| 10:17104437:A:T | C467S | 0.995 |
| 10:17114157:C:A | W251C | 0.995 |
| 10:17114157:C:G | W251C | 0.995 |
| 10:16828952:C:A | W3539C | 0.994 |
| 10:16828952:C:G | W3539C | 0.994 |
| 10:16828997:G:C | S3524R | 0.994 |
| 10:16828997:G:T | S3524R | 0.994 |
| 10:16828999:T:G | S3524R | 0.994 |
| 10:16954409:A:C | F1612C | 0.994 |
| 10:16954409:A:G | F1612S | 0.994 |
| 10:16990434:C:G | C1417S | 0.994 |
| 10:16990435:A:G | C1417R | 0.994 |
| 10:16990435:A:T | C1417S | 0.994 |
| 10:17100021:C:A | W583C | 0.993 |
| 10:17100021:C:G | W583C | 0.993 |
| 10:17109711:C:G | C347S | 0.993 |
| 10:17109712:A:T | C347S | 0.993 |
| 10:16928172:C:G | A2086P | 0.992 |
| 10:16937640:A:G | W1960R | 0.992 |
| 10:16937640:A:T | W1960R | 0.992 |
| 10:16939058:A:G | W1880R | 0.992 |
| 10:16939058:A:T | W1880R | 0.992 |
| 10:16947324:G:C | S1751R | 0.992 |
| 10:16947324:G:T | S1751R | 0.992 |
| 10:16947326:T:G | S1751R | 0.992 |
dbSNP variants (sampled 300 via entrez): RS1000013462 (10:16859348 T>C), RS1000014802 (10:17035894 T>C), RS1000019204 (10:16930248 A>G), RS1000042237 (10:17059628 A>G), RS1000047222 (10:16881802 T>A), RS1000058298 (10:17009560 C>G), RS1000058949 (10:17113782 C>A), RS1000065646 (10:17047080 T>A), RS1000067320 (10:16895769 G>A), RS1000071251 (10:16958553 G>A), RS1000077750 (10:17000265 C>A,G), RS1000080493 (10:16901983 A>G), RS1000117887 (10:16988775 A>G), RS1000128299 (10:17000424 C>G,T), RS1000139621 (10:16857185 G>A)
Disease associations
OMIM: gene MIM:602997 | disease phenotypes: MIM:261100, MIM:618884
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Imerslund-Grasbeck syndrome type 1 | Definitive | Autosomal recessive |
| proteinuria, chronic benign | Strong | Autosomal recessive |
| Imerslund-Grasbeck syndrome | Supportive | Autosomal recessive |
Mondo (7): Imerslund-Grasbeck syndrome (MONDO:0009853), proteinuria, chronic benign (MONDO:0030042), Imerslund-Grasbeck syndrome type 1 (MONDO:0100156), proteinuria (MONDO:0003634), chronic kidney disease (MONDO:0005300), focal segmental glomerulosclerosis (MONDO:0100313), autism spectrum disorder (MONDO:0005258)
Orphanet (2): Imerslund-Gräsbeck syndrome (Orphanet:35858), NON RARE IN EUROPE: Autism (Orphanet:106)
HPO phenotypes
40 total (30 of 40 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000083 | Renal insufficiency |
| HP:0000093 | Proteinuria |
| HP:0000206 | Glossitis |
| HP:0000707 | Abnormality of the nervous system |
| HP:0000726 | Dementia |
| HP:0000750 | Delayed speech and language development |
| HP:0000980 | Pallor |
| HP:0001252 | Hypotonia |
| HP:0001289 | Confusion |
| HP:0001508 | Failure to thrive |
| HP:0001649 | Tachycardia |
| HP:0001824 | Weight loss |
| HP:0001873 | Thrombocytopenia |
| HP:0001875 | Decreased total neutrophil count |
| HP:0001876 | Pancytopenia |
| HP:0001889 | Megaloblastic anemia |
| HP:0001892 | Abnormal bleeding |
| HP:0001923 | Reticulocytosis |
| HP:0001972 | Macrocytic anemia |
| HP:0002013 | Vomiting |
| HP:0002019 | Constipation |
| HP:0002376 | Developmental regression |
| HP:0002721 | Immunodeficiency |
| HP:0002907 | Microscopic hematuria |
| HP:0003401 | Paresthesia |
| HP:0003474 | Somatic sensory dysfunction |
| HP:0004396 | Poor appetite |
| HP:0004821 | Hypersegmentation of neutrophil nuclei |
| HP:0004823 | Anisopoikilocytosis |
GWAS associations
50 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000337_26 | Quantitative traits | 6.000000e-06 |
| GCST000358_2 | Folate pathway vitamin levels | 1.000000e-06 |
| GCST000483_3 | Folate pathway vitamin levels | 3.000000e-09 |
| GCST000891_4 | Whole-brain volume | 3.000000e-06 |
| GCST000988_1 | Urinary albumin excretion | 1.000000e-11 |
| GCST002087_11 | Homocysteine levels | 8.000000e-10 |
| GCST002087_15 | Homocysteine levels | 8.000000e-10 |
| GCST002221_72 | Cholesterol, total | 3.000000e-11 |
| GCST002559_4 | Vitamin B levels in ischemic stroke | 2.000000e-13 |
| GCST002919_3 | Colorectal cancer | 7.000000e-08 |
| GCST002937_2 | Molybdenum levels | 3.000000e-07 |
| GCST003253_1 | Microalbuminuria | 1.000000e-10 |
| GCST003254_2 | Urinary albumin-to-creatinine ratio in non-diabetics | 4.000000e-06 |
| GCST003255_8 | Urinary albumin-to-creatinine ratio | 2.000000e-10 |
| GCST003774_1 | Urinary albumin-to-creatinine ratio | 2.000000e-08 |
| GCST004235_38 | Total cholesterol levels | 5.000000e-11 |
| GCST004616_78 | Platelet distribution width | 6.000000e-17 |
| GCST005387_2 | Binge eating behaviour in bipolar disorder | 1.000000e-07 |
| GCST006463_14 | Urinary albumin excretion (no hypertensive medication) | 1.000000e-51 |
| GCST006463_15 | Urinary albumin excretion (no hypertensive medication) | 4.000000e-09 |
| GCST006463_16 | Urinary albumin excretion (no hypertensive medication) | 3.000000e-84 |
| GCST006586_24 | Urinary albumin excretion | 2.000000e-92 |
| GCST006586_25 | Urinary albumin excretion | 3.000000e-11 |
| GCST006586_26 | Urinary albumin excretion | 9.000000e-09 |
| GCST006586_27 | Urinary albumin excretion | 2.000000e-107 |
| GCST007202_3 | High density lipoprotein cholesterol levels | 1.000000e-06 |
| GCST007718_1 | Urinary albumin-to-creatinine ratio | 1.000000e-51 |
| GCST007718_2 | Urinary albumin-to-creatinine ratio | 1.000000e-40 |
| GCST007718_3 | Urinary albumin-to-creatinine ratio | 4.000000e-62 |
| GCST008610_2 | Proteinuria | 3.000000e-15 |
EFO canonical traits (14, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006336 | diastolic blood pressure |
| EFO:0004620 | vitamin B12 measurement |
| EFO:0005089 | whole-brain volume |
| EFO:0004285 | albuminuria |
| EFO:0004578 | homocysteine measurement |
| EFO:0004574 | total cholesterol measurement |
| EFO:0007778 | urinary albumin to creatinine ratio |
| EFO:0007984 | platelet component distribution width |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0004531 | urate measurement |
| EFO:0005420 | grey matter volume measurement |
| EFO:0010408 | triacylglycerol 50:1 measurement |
| EFO:0009963 | bipolar I disorder |
| EFO:0007985 | platelet crit |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D005923 | Glomerulosclerosis, Focal Segmental | C12.050.351.968.419.570.363.640; C12.200.777.419.570.363.660; C12.950.419.570.363.640 |
| D007676 | Kidney Failure, Chronic | C12.050.351.968.419.780.750.500; C12.200.777.419.780.750.500; C12.950.419.780.750.500; C23.550.291.500.906.500 |
| D011507 | Proteinuria | C12.050.351.968.934.734; C12.200.777.934.734; C12.950.934.734; C23.888.942.750 |
| C538556 | Imerslund-Grasbeck syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
17 total (human), top 17 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases methylation | 2 |
| Valproic Acid | decreases expression, increases methylation | 2 |
| triphenyl phosphate | affects expression | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| bisphenol A | increases methylation, decreases methylation, affects cotreatment | 1 |
| sodium arsenite | increases expression | 1 |
| ochratoxin A | decreases acetylation | 1 |
| entinostat | increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Zoledronic Acid | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Methamphetamine | affects response to substance | 1 |
| N-Nitrosopyrrolidine | decreases expression | 1 |
| Thiram | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Vitamin K 3 | decreases expression | 1 |
Cellosaurus cell lines
4 cell lines: 3 finite cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B3YU | WG2625 | Finite cell line | Male |
| CVCL_B3Z4 | WG3086 | Finite cell line | Male |
| CVCL_B4EF | WG3705 | Finite cell line | |
| CVCL_C0LP | GM28311 | Transformed cell line | Female |
Clinical trials (associated diseases)
163 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00067990 | PHASE4 | COMPLETED | Angiotensin II Blockade for Chronic Allograft Nephropathy |
| NCT00234871 | PHASE4 | COMPLETED | Tarka® vs. Lotrel® in Hypertensive, Diabetic Subjects With Renal Disease (TANDEM) |
| NCT00241085 | PHASE4 | COMPLETED | Effect of Valsartan on Proteinuria in Patients With Hypertension and Diabetes Mellitus |
| NCT00369538 | PHASE4 | SUSPENDED | Specific Blockage of Angiotensine 2 and Podocyturia in Glomerular Nephropathies With Hypertension and Proteinuria |
| NCT00508898 | PHASE4 | WITHDRAWN | The Efficacy and Safety of Calcitriol for the Treatment of Lupus Nephritis and Persistent Proteinuria |
| NCT00550095 | PHASE4 | COMPLETED | To Assess the Effects of Valsartan on Albuminuria/Proteinuria in Hypertensive Patients With Type 2 Diabetes Mellitus |
| NCT00674596 | PHASE4 | COMPLETED | The Effect of Renin Angiotensin System Blockage (RAS) Blockade On PTX3 Levels In Diabetic Patients With Proteinuria |
| NCT00858299 | PHASE4 | UNKNOWN | The Change of Urinary Angiotensinogen Excretion After Valsartan Treatment in Patients With Persistent Proteinuria |
| NCT00893425 | PHASE4 | COMPLETED | Effect of Renin Angiotensin System Blockade on the Fas Antigen (CD95) and Asymmetric Dimethylarginine (ADMA) Levels in Type-2 Diabetic Patients With Proteinuria |
| NCT00921570 | PHASE4 | COMPLETED | The Effects of Renin Angiotensin System Blockage (RAS), Calcium Channel Blocker and Combined Drugs on TWEAK, PTX3 and FMD Levels in Diabetic Proteinuric Patients With Hypertension |
| NCT00961207 | PHASE4 | TERMINATED | Triple Blockade of the Renin Angiotensin Aldosterone System in Diabetic (Type 1&2) Proteinuric Patients |
| NCT01169857 | PHASE4 | WITHDRAWN | Velcade for Proliferative Lupus Nephritis |
| NCT01219413 | PHASE4 | COMPLETED | Influence of Aliskiren on Proteinuria |
| NCT01386554 | PHASE4 | COMPLETED | Acthar for Treatment of Proteinuria in Membranous Nephropathy Patients |
| NCT01512862 | PHASE4 | UNKNOWN | Anti-proteinuric Effect of Calcitriol in Non-diabetic Kidney Disease Patients |
| NCT01541267 | PHASE4 | COMPLETED | The Effect of Various Types of the Renin-angiotensin-aldosterone System Blockade on Proteinuria |
| NCT01637259 | PHASE4 | COMPLETED | MARCH Renal Substudy |
| NCT01703234 | PHASE4 | COMPLETED | FGF-23 and Endothelial Dysfunction in Diabetic Proteinuric Patients |
| NCT01820832 | PHASE4 | UNKNOWN | Oral Calcitriol for Reduction of Mild Proteinuria in Patients With CKD |
| NCT01827202 | PHASE4 | COMPLETED | RAS Quantification in Patients With Aliskiren or Candesartan |
| NCT02057523 | PHASE4 | TERMINATED | Acthar as Rescue Therapy for Transplant Glomerulopathy in Kidney Transplant Recipients |
| NCT02063100 | PHASE4 | UNKNOWN | Efficacy and Safety of Shenyankangfu Tablets for Primary Glomerulonephritis |
| NCT02382523 | PHASE4 | WITHDRAWN | Acthar on Proteinuria in IgA Nephropathy Patients |
| NCT02522650 | PHASE4 | UNKNOWN | A Crossover Pilot Study of the Effect of Amiloride on Proteinuria |
| NCT03195023 | PHASE4 | UNKNOWN | Effect of RAS Blockers on CKD Progression in Elderly Patients With Non Proteinuric Nephropathies (PROERCAN01) |
| NCT03550859 | PHASE4 | UNKNOWN | HMG-CoA Reductase add-on in Chronic Kidney Disease Patients With Proteinuria |
| NCT03983551 | PHASE4 | COMPLETED | Comparing the Renal Effect of Dipeptidyl-peptidase 4 Inhibitors and Sulfonylureas |
| NCT04531397 | PHASE4 | WITHDRAWN | Efficacy and Safety of Dapagliflozin in Children With Proteinuric Chronic Kidney Disease |
| NCT04534270 | PHASE4 | COMPLETED | Efficacy and Safety of Dapagliflozin in Children With Proteinuria |
| NCT06374043 | PHASE4 | COMPLETED | Decentralized N=1 Study: A Feasible Approach to Evaluate Individual Therapy Response to Dapagliflozin. |
| NCT07030894 | PHASE4 | RECRUITING | Nefecon and Ambrisentan in IgA Nephropathy |
| NCT07219121 | PHASE4 | RECRUITING | Sparsentan in Posttransplant Immunoglobulin A Nephropathy or Focal Segmental Glomerulosclerosis |
| NCT07358520 | PHASE4 | NOT_YET_RECRUITING | Clinical Study on the Use of Huaier Granules for the Treatment of Proteinuria Related to Bevacizumab and Anlotinib in Lung Cancer Patients |
| NCT00073710 | PHASE4 | COMPLETED | Study to Evaluate the Effects of Zemplar Injection and Calcijex on Intestinal Absorption of Calcium |
| NCT00125593 | PHASE4 | COMPLETED | Study of Heart and Renal Protection |
| NCT00132431 | PHASE4 | COMPLETED | START: Sensipar Treatment Algorithm to Reach K/DOQI Targets in Chronic Kidney Disease Subjects With Secondary Hyperparathyroidism |
| NCT00155246 | PHASE4 | COMPLETED | Efficacy of Pentoxifylline on Chronic Kidney Disease |
| NCT00175149 | PHASE4 | TERMINATED | Active Vitamin D Effect on Left Ventricular Hypertrophy |
| NCT00184769 | PHASE4 | COMPLETED | Growth Hormone Treatment in Infants Aged 1 to 2 Years With Chronic Renal Insufficiency (CRI) and Growth Retardation. |
| NCT00190580 | PHASE4 | COMPLETED | Kanagawa Valsartan Trial (KVT): Effects of Valsartan on Renal and Cardiovascular Disease |
Related Atlas pages
- Associated diseases: Imerslund-Grasbeck syndrome type 1, proteinuria, chronic benign, Imerslund-Grasbeck syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): binge eating disorder, focal segmental glomerulosclerosis, Imerslund-Grasbeck syndrome, Imerslund-Grasbeck syndrome type 1, proteinuria, proteinuria, chronic benign