CXXC5-AS1

Summary

CXXC5-AS1 (CXXC5 antisense RNA 1, HGNC:53009) is a long non-coding RNA gene on chromosome 5q31.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53009
Approved symbol	CXXC5-AS1
Name	CXXC5 antisense RNA 1
Location	5q31.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250635
Ensembl biotype	lncRNA
Entrez	111082989
RNAcentral	URS0000001E80 — lncRNA, 577 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000514287, ENST00000756719, ENST00000756720

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000514287 — 2 exons

Exon	Start	End
ENSE00002026196	139649335	139649728
ENSE00002068949	139648999	139649181

Expression profiles

Bgee: expression breadth ubiquitous, 111 present calls, max score 70.86.

Top tissues by expression

111 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	70.86	silver quality
cortical plate	UBERON:0005343	68.06	gold quality
ventricular zone	UBERON:0003053	66.35	gold quality
colonic epithelium	UBERON:0000397	66.28	silver quality
skeletal muscle tissue	UBERON:0001134	65.88	gold quality
bone marrow	UBERON:0002371	63.42	gold quality
sural nerve	UBERON:0015488	61.89	silver quality
hindlimb stylopod muscle	UBERON:0004252	60.33	gold quality
liver	UBERON:0002107	57.84	gold quality
blood	UBERON:0000178	55.69	gold quality
prefrontal cortex	UBERON:0000451	55.56	gold quality
tonsil	UBERON:0002372	55.08	silver quality
monocyte	CL:0000576	54.67	gold quality
gall bladder	UBERON:0002110	54.37	gold quality
lymph node	UBERON:0000029	54.20	gold quality
primary visual cortex	UBERON:0002436	54.20	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.07	gold quality
stromal cell of endometrium	CL:0002255	54.04	silver quality
islet of Langerhans	UBERON:0000006	53.89	gold quality
kidney	UBERON:0002113	53.66	gold quality
cerebellum	UBERON:0002037	53.01	gold quality
right hemisphere of cerebellum	UBERON:0014890	52.95	gold quality
cerebellar cortex	UBERON:0002129	52.87	gold quality
cerebellar hemisphere	UBERON:0002245	52.67	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	52.26	gold quality
cortex of kidney	UBERON:0001225	52.09	gold quality
adult mammalian kidney	UBERON:0000082	51.64	gold quality
right adrenal gland cortex	UBERON:0035827	50.89	gold quality
urinary bladder	UBERON:0001255	50.87	silver quality
pancreas	UBERON:0001264	50.74	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.