CYB5R3
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Also known as B5R
Summary
CYB5R3 (cytochrome b5 reductase 3, HGNC:2873) is a protein-coding gene on chromosome 22q13.2, encoding NADH-cytochrome b5 reductase 3 (P00387). Catalyzes the reduction of two molecules of cytochrome b5 using NADH as the electron donor.
This gene encodes cytochrome b5 reductase, which includes a membrane-bound form in somatic cells (anchored in the endoplasmic reticulum, mitochondrial and other membranes) and a soluble form in erythrocytes. The membrane-bound form exists mainly on the cytoplasmic side of the endoplasmic reticulum and functions in desaturation and elongation of fatty acids, in cholesterol biosynthesis, and in drug metabolism. The erythrocyte form is located in a soluble fraction of circulating erythrocytes and is involved in methemoglobin reduction. The membrane-bound form has both membrane-binding and catalytic domains, while the soluble form has only the catalytic domain. Alternate splicing results in multiple transcript variants. Mutations in this gene cause methemoglobinemias.
Source: NCBI Gene 1727 — RefSeq curated summary.
At a glance
- Gene–disease (curated): methemoglobinemia due to deficiency of methemoglobin reductase (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 1
- Clinical variants (ClinVar): 297 total — 23 pathogenic, 10 likely-pathogenic
- Phenotypes (HPO): 36
- Druggable target: yes
- MANE Select transcript:
NM_000398
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2873 |
| Approved symbol | CYB5R3 |
| Name | cytochrome b5 reductase 3 |
| Location | 22q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | B5R |
| Ensembl gene | ENSG00000100243 |
| Ensembl biotype | protein_coding |
| OMIM | 613213 |
| Entrez | 1727 |
Gene structure
Transcript identifiers
Ensembl transcripts: 40 — 21 protein_coding, 11 retained_intron, 7 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000352397, ENST00000361740, ENST00000402438, ENST00000407332, ENST00000407623, ENST00000438270, ENST00000466276, ENST00000470741, ENST00000684963, ENST00000685184, ENST00000686129, ENST00000686523, ENST00000687183, ENST00000687198, ENST00000688004, ENST00000688117, ENST00000688244, ENST00000689001, ENST00000689195, ENST00000689239, ENST00000689795, ENST00000690835, ENST00000690993, ENST00000691295, ENST00000691918, ENST00000692152, ENST00000692344, ENST00000693157, ENST00000693363, ENST00000693367, ENST00000693639, ENST00000693646, ENST00000693716, ENST00000897014, ENST00000897015, ENST00000897016, ENST00000897017, ENST00000897018, ENST00000897019, ENST00000966833
RefSeq mRNA: 5 — MANE Select: NM_000398
NM_000398, NM_001129819, NM_001171660, NM_001171661, NM_007326
CCDS: CCDS14040, CCDS33658, CCDS54535
Canonical transcript exons
ENST00000352397 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000656632 | 42631378 | 42631450 |
| ENSE00001892790 | 42649295 | 42649392 |
| ENSE00002307931 | 42617840 | 42619945 |
| ENSE00003199477 | 42630882 | 42630988 |
| ENSE00003467953 | 42628152 | 42628281 |
| ENSE00003489064 | 42636715 | 42636846 |
| ENSE00003594846 | 42627605 | 42627688 |
| ENSE00003611593 | 42623789 | 42623888 |
| ENSE00003635480 | 42627304 | 42627389 |
Expression profiles
Bgee: expression breadth ubiquitous, 294 present calls, max score 99.54.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 124.6718 / max 728.0471, expressed in 1824 samples.
FANTOM5 promoters (20 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 194465 | 102.8864 | 1822 |
| 194449 | 3.5743 | 1364 |
| 194447 | 3.4235 | 1369 |
| 194461 | 2.4182 | 327 |
| 194455 | 2.1230 | 1189 |
| 194458 | 2.1008 | 1176 |
| 194454 | 1.6922 | 1013 |
| 194466 | 1.0598 | 749 |
| 194464 | 1.0084 | 193 |
| 194453 | 0.8175 | 476 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right coronary artery | UBERON:0001625 | 99.54 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.54 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.50 | gold quality |
| ascending aorta | UBERON:0001496 | 99.49 | gold quality |
| saphenous vein | UBERON:0007318 | 99.48 | gold quality |
| urethra | UBERON:0000057 | 99.46 | gold quality |
| aorta | UBERON:0000947 | 99.44 | gold quality |
| olfactory bulb | UBERON:0002264 | 99.44 | gold quality |
| popliteal artery | UBERON:0002250 | 99.40 | gold quality |
| tibial artery | UBERON:0007610 | 99.40 | gold quality |
| skin of hip | UBERON:0001554 | 99.37 | gold quality |
| coronary artery | UBERON:0001621 | 99.35 | gold quality |
| left coronary artery | UBERON:0001626 | 99.33 | gold quality |
| synovial joint | UBERON:0002217 | 99.33 | gold quality |
| vena cava | UBERON:0004087 | 99.30 | gold quality |
| stromal cell of endometrium | CL:0002255 | 99.22 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 99.21 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 99.21 | gold quality |
| pancreatic ductal cell | CL:0002079 | 99.19 | gold quality |
| adipose tissue | UBERON:0001013 | 99.19 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 99.18 | gold quality |
| right adrenal gland | UBERON:0001233 | 99.17 | gold quality |
| apex of heart | UBERON:0002098 | 99.17 | gold quality |
| nipple | UBERON:0002030 | 99.16 | gold quality |
| seminal vesicle | UBERON:0000998 | 99.14 | gold quality |
| cardia of stomach | UBERON:0001162 | 99.13 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 99.13 | gold quality |
| connective tissue | UBERON:0002384 | 99.11 | gold quality |
| right atrium auricular region | UBERON:0006631 | 99.11 | gold quality |
| adrenal cortex | UBERON:0001235 | 99.10 | gold quality |
Single-cell (SCXA)
Detected in 10 experiment(s), a significant marker in 8.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-135922 | yes | 37.28 |
| E-HCAD-1 | yes | 32.21 |
| E-MTAB-8410 | yes | 11.82 |
| E-MTAB-10042 | yes | 7.76 |
| E-CURD-88 | yes | 7.38 |
| E-MTAB-6678 | yes | 7.37 |
| E-MTAB-7249 | yes | 4.82 |
| E-MTAB-10137 | no | 4.54 |
| E-CURD-112 | no | 3.52 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
69 targeting CYB5R3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-6842-5P | 99.80 | 67.54 | 1587 |
| HSA-MIR-7110-5P | 99.80 | 67.84 | 1712 |
| HSA-MIR-1273H-5P | 99.77 | 66.32 | 2471 |
| HSA-MIR-4766-5P | 99.75 | 69.23 | 2662 |
| HSA-MIR-30B-3P | 99.70 | 65.76 | 2325 |
| HSA-MIR-3689A-3P | 99.70 | 65.73 | 2306 |
| HSA-MIR-3689B-3P | 99.70 | 65.71 | 2311 |
| HSA-MIR-3689C | 99.70 | 65.71 | 2311 |
| HSA-MIR-6779-5P | 99.70 | 65.76 | 2363 |
| HSA-MIR-1827 | 99.63 | 68.57 | 3265 |
| HSA-MIR-3975 | 99.62 | 65.97 | 697 |
| HSA-MIR-6752-5P | 99.59 | 67.32 | 1243 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-4472 | 99.56 | 66.08 | 1478 |
| HSA-MIR-7106-5P | 99.53 | 67.47 | 3574 |
| HSA-MIR-4498 | 99.47 | 67.42 | 2360 |
| HSA-MIR-6837-5P | 99.25 | 65.47 | 1632 |
Literature-anchored findings (GeneRIF, showing 31)
- It was shown that Yakut patients have none of three missence mutations, Arg57Gln, Leu72Pro, and Val105Met, described in case of this disease in the neighboring populations, Chinese and Japanese, inhabiting the territories south of Yakutia (PMID:12884529)
- A decrease of the activity of membrane-bound NADH-methemoglobin reductase and a change of physical state of the lipid bilayer of membranes under oxidative stress were found in erythrocytes in vivo and in vitro. (PMID:15039026)
- Amino acid substitution results in congsenital methemoglobinemia. (PMID:15297856)
- crystal structure of cytochrome b(5) reductase (PMID:15502298)
- Recessive congenital methaemoglobinaemia observed in a Lebanese subject with a novel mutation in NADH-cytochrome b5 reductase gene. (PMID:15813912)
- A novel intronic mutation at 22163 caused markedly reduced mRNA (7% of normal) resulting in type II methemoglobinemia. (PMID:15921385)
- Dia1 is required for the formation of the actin coat around endosomes downstream of RhoB, connecting membrane trafficking with the regulation of actin dynamics. (PMID:15944396)
- DIA1 and IQGAP1 interact in cell migration and phagocytic cup formation. (PMID:17620407)
- report of the clinical and molecular characteristics of 6 new patients with recessive hereditary methemoglobinemia due to cytochrome b5 reductase deficiency; two new mutations of DIA1, c. 82 C>T(Gln27STOP) and c. 136 C>T(Arg45Trp), were found (PMID:18343696)
- The decline in the activities of G6PD and b5Rm would indicate a decrease in the antioxidant response associated with RBC aging. (PMID:19811411)
- novel cSNPs associated with significantly altered protein expression and/or hydroxylamine reduction activities, but only minimally impact overall observed phenotypic variability (PMID:19997042)
- Dia1 is localized to the perinuclear endoplasmic reticulum in an RNA-zipcode-independent manner in fibroblasts. (PMID:21266463)
- novel allelic mutation identified at codon 235 is in helix 5; first report of mental retardation because of the novel mutation, along with a second mutation in the NADH-b5R gene in an Indian family with recessive congenital methemoglobinemia Type II (PMID:21328435)
- CYB5R3 gene of three probands with type I methemoglobinemia and their relatives were sequenced revealing several putative causative mutations; in one subject multiple mutations were present (PMID:21349748)
- Dapsone-associated methemoglobinemia in a patient with slow NAT2*5B haplotype and impaired cytochrome b5 reductase activity (PMID:21422237)
- We conclude that Cytochrome b(5)and cytochrome b(5) reductase catalyze the reduction of arylhydroxylamines in breast tissue. (PMID:21447608)
- A comprehensive overview of the study of structure and function of human cytochrome b5 reductase. (PMID:23113554)
- Novel large deletion c.22-1320_633+1224del in the CYB5R3 gene from patients with hereditary methemoglobinemia (PMID:23297489)
- Data indicate that mitochondrial amidoxime reducing components 1 and 2 together with the electron transport proteins NADH-cytochrome b5 reductase (CYB5R) and cytochrome b5 (CYB5) catalyze the reduction of N-hydroxylated compounds such as amidoximes. (PMID:23703616)
- Population frequency and age of c.806C > T mutation in CYB5R3 gene as cause of recessive congenital methemoglobinemia in Yakutia. (PMID:23866629)
- NADH-CYB5R deficiency causes two forms of recessive congenital methemoglobinemia with cyanosis. (PMID:24266649)
- The results unveil a potential mechanism of action by which CYB5R3 deficiency contributes to the pathophysiological underpinnings of neurological disorders in RHM patients. (PMID:24450884)
- Variants in CYB5A and CYB5R3 should be considered in the evaluation of breast cancer risk in African American women. (PMID:25225034)
- Genetic variation in CYB5R3 is associated with methemoglobin levels in preterm infants receiving nitric oxide therapy. (PMID:25521918)
- CYB5R3 promotes colonization and metastasis formation and is a prognostic marker of disease-free and overall survival in estrogen receptor-negative breast cancer. (PMID:26351264)
- Data suggest that cytochrome b5 (CYB5) and cytochrome b5 reductase 3 (CYB5R3) can reduce human cytoglobin (CYGB) and zebrafish cytoglobins at rates up to 250-fold higher than those reported for the known physiological substrates, hemoglobin and myoglobin; the three proteins (CYB5+CYB5R3+CYGB) appear to constitute a metabolon involved in generation of nitric oxide. (PMID:28671819)
- study indicated that novel homozygous mutation p.Arg192Cys in CYB5R3 gene present in eight cases and the possibility of high prevalence of heterozygous in Indian population causing Type I recessive congenital methemoglobinemia. (PMID:29482478)
- Mutation update: Variants of the CYB5R3 gene in recessive congenital methemoglobinemia. (PMID:31898843)
- The CYB5R3(c) (.350C>G) and G6PD A alleles modify severity of anemia in malaria and sickle cell disease. (PMID:32697331)
- Three novel mutations in CYB5R3 gene causing NADH-cytochrome b5 reductase enzyme deficiency leads to recessive congenital methaemoglobinemia. (PMID:35064402)
- CYB5R3 T117S Genetic Mutation Is Associated With Major Adverse Cardiovascular and Cerebrovascular Events in Black Adults. (PMID:38353123)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cyb5r3 | ENSDARG00000005891 |
| mus_musculus | Cyb5r3 | ENSMUSG00000018042 |
| rattus_norvegicus | Cyb5r3 | ENSRNOG00000009592 |
| drosophila_melanogaster | CG5946 | FBGN0036211 |
| caenorhabditis_elegans | WBGENE00020267 | |
| caenorhabditis_elegans | WBGENE00020268 |
Paralogs (5): CYB5R4 (ENSG00000065615), OXNAD1 (ENSG00000154814), CYB5R1 (ENSG00000159348), CYB5R2 (ENSG00000166394), CYB5RL (ENSG00000215883)
Protein
Protein identifiers
NADH-cytochrome b5 reductase 3 — P00387 (reviewed: P00387)
Alternative names: Diaphorase-1
All UniProt accessions (16): P00387, A0A8I5KNV1, A0A8I5KPU0, A0A8I5KR71, A0A8I5KTF9, A0A8I5KUA5, A0A8I5KVD2, A0A8I5KW26, A0A8I5KXI5, A0A8I5KYU1, A0A8I5QKL2, A0A8I5QKT9, A0A8I5QKX1, A0A8J8YWN6, A0A8J8Z3C6, B1AHF3
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the reduction of two molecules of cytochrome b5 using NADH as the electron donor.
Subunit / interactions. Component of a complex composed of cytochrome b5, NADH-cytochrome b5 reductase (CYB5R3) and MTARC2. Interacts with MTLN; the interaction is required to maintain cellular lipid composition and leads to stimulation of mitochondrial respiratory complex I activity.
Subcellular location. Endoplasmic reticulum membrane. Mitochondrion outer membrane Cytoplasm.
Tissue specificity. Expressed at late stages of erythroid maturation.
Disease relevance. Methemoglobinemia CYB5R3-related (METHB-CYB5R3) [MIM:250800] A form of methemoglobinemia, a hematologic disease characterized by the presence of excessive amounts of methemoglobin in blood cells, resulting in decreased oxygen carrying capacity of the blood, cyanosis and hypoxia. There are two types of methemoglobinemia CYB5R3-related. In type 1, the defect affects the soluble form of the enzyme, is restricted to red blood cells, and causes well-tolerated methemoglobinemia. In type 2, the defect affects both the soluble and microsomal forms of the enzyme and is thus generalized, affecting red cells, leukocytes and all body tissues. Type 2 methemoglobinemia is associated with mental deficiency and other neurologic symptoms. The disease is caused by variants affecting the gene represented in this entry.
Polymorphism. Ser-117 seems to only be found in persons of African origin. The allele frequency is 0.23 in African Americans. It was not found in Caucasians, Asians, Indo-Aryans, or Arabs. There seems to be no effect on the enzyme activity.
Similarity. Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P00387-1 | 1, M | yes |
| P00387-2 | 2, S | |
| P00387-3 | 3 |
RefSeq proteins (5): NP_000389, NP_001123291, NP_001165131, NP_001165132, NP_015565 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001433 | OxRdtase_FAD/NAD-bd | Domain |
| IPR001709 | Flavoprot_Pyr_Nucl_cyt_Rdtase | Domain |
| IPR001834 | CBR-like | Family |
| IPR008333 | Cbr1-like_FAD-bd_dom | Domain |
| IPR017927 | FAD-bd_FR_type | Domain |
| IPR017938 | Riboflavin_synthase-like_b-brl | Homologous_superfamily |
| IPR039261 | FNR_nucleotide-bd | Homologous_superfamily |
Pfam: PF00175, PF00970
Enzyme classification (BRENDA):
- EC 1.6.2.2 — cytochrome-b5 reductase (BRENDA: 34 organisms, 101 substrates, 111 inhibitors, 300 Km, 221 kcat entries)
Substrate kinetics (BRENDA)
23 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| NADH | 0.0002–3.32 | 94 |
| FERRICYANIDE | 0.0006–4.35 | 72 |
| FERRICYTOCHROME B5 | — | 66 |
| CYTOCHROME B5 | 0.0011–0.042 | 19 |
| NADPH | 0.001–7.69 | 17 |
| FERROCYTOCHROME B5 | 0.001–0.107 | 6 |
| FERRICYTOCHOME B5 | 0.01–0.013 | 4 |
| FERRICYTOCHROME C | 0.0003–0.007 | 3 |
| OXIDIZED 2,6-DICHLOROPHENOLINDOPHENOL | 0.328–0.83 | 2 |
| 1,4-NAPHTHOQUINONE | 0.0098 | 1 |
| 2-HYDROXYESTRADIOL | 0.0026 | 1 |
| 2-METHYL-1,4-NAPHTHOQUINONE | 0.077 | 1 |
| 9,10-PHENANTHRENEQUINONE | 0.0057 | 1 |
| AQUACOBALAMIN | 0.0419 | 1 |
| BENZAMIDOXIME | 0.63 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- 2 Fe(III)-[cytochrome b5] + NADH = 2 Fe(II)-[cytochrome b5] + NAD(+) + H(+) (RHEA:46680)
UniProt features (83 total): strand 18, sequence variant 14, mutagenesis site 12, binding site 10, helix 10, sequence conflict 9, modified residue 3, splice variant 2, initiator methionine 1, chain 1, lipid moiety-binding region 1, domain 1, turn 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1UMK | X-RAY DIFFRACTION | 1.75 |
| 7TNV | X-RAY DIFFRACTION | 1.93 |
| 7TSW | X-RAY DIFFRACTION | 2.4 |
| 7W3O | X-RAY DIFFRACTION | 2.46 |
| 7THG | X-RAY DIFFRACTION | 2.9 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P00387-F1 | 93.90 | 0.89 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (10): 127; 128; 185; 92; 93; 94; 109; 111; 114; 126
Post-translational modifications (4): 42, 43, 120, 2
Mutagenesis-validated functional residues (12):
| Position | Phenotype |
|---|---|
| 128 | decreased nadh-cytochrome b5 reductase activity, highly increases km for nadh and decreases kcat. |
| 204 | no effect on nadh-cytochrome b5 reductase activity. |
| 274 | loss of 30% of nadh-cytochrome b5 reductase activity. |
| 274 | loss of 80% of nadh-cytochrome b5 reductase activity. |
| 274 | no effect on nadh-cytochrome b5 reductase activity. |
| 284 | no effect on nadh-cytochrome b5 reductase activity. |
| 298 | no effect on nadh-cytochrome b5 reductase activity. |
| 299–301 | no effect on protein stability and nadh-cytochrome b5 reductase activity. |
| 299 | decreases protein stability and slightly decreases nadh-cytochrome b5 reductase activity. |
| 299 | no effect on protein stability and nadh-cytochrome b5 reductase activity. |
| 301 | decreases protein stability and slightly decreases nadh-cytochrome b5 reductase activity. |
| 301 | no effect on protein stability and nadh-cytochrome b5 reductase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
9 pathways
| ID | Pathway |
|---|---|
| R-HSA-196836 | Vitamin C (ascorbate) metabolism |
| R-HSA-211945 | Phase I - Functionalization of compounds |
| R-HSA-6798695 | Neutrophil degranulation |
| R-HSA-1430728 | Metabolism |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-196849 | Metabolism of water-soluble vitamins and cofactors |
| R-HSA-196854 | Metabolism of vitamins and cofactors |
| R-HSA-211859 | Biological oxidations |
MSigDB gene sets: 268 (showing top):
MODULE_93, REACTOME_BIOLOGICAL_OXIDATIONS, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOCC_SECRETORY_GRANULE, HSIAO_HOUSEKEEPING_GENES, MCBRYAN_PUBERTAL_TGFB1_TARGETS_UP, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, MILI_PSEUDOPODIA_HAPTOTAXIS_UP, GOBP_REACTIVE_NITROGEN_SPECIES_METABOLIC_PROCESS, MCBRYAN_PUBERTAL_BREAST_3_4WK_UP, GOBP_STEROID_BIOSYNTHETIC_PROCESS, GOCC_MITOCHONDRIAL_ENVELOPE, GOBP_LIPID_METABOLIC_PROCESS, SANSOM_APC_TARGETS_DN
GO Biological Process (8): cholesterol biosynthetic process (GO:0006695), nitric oxide biosynthetic process (GO:0006809), blood circulation (GO:0008015), lipid metabolic process (GO:0006629), steroid biosynthetic process (GO:0006694), steroid metabolic process (GO:0008202), cholesterol metabolic process (GO:0008203), sterol biosynthetic process (GO:0016126)
GO Molecular Function (6): cytochrome-b5 reductase activity, acting on NAD(P)H (GO:0004128), FAD binding (GO:0071949), cytochrome-b5 reductase activity, acting on NADH (GO:0090524), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), nitrite reductase (NO-forming) activity (GO:0050421)
GO Cellular Component (18): extracellular region (GO:0005576), cytoplasm (GO:0005737), mitochondrion (GO:0005739), mitochondrial outer membrane (GO:0005741), endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), lipid droplet (GO:0005811), cytosol (GO:0005829), hemoglobin complex (GO:0005833), membrane (GO:0016020), mitochondrial membrane (GO:0031966), perinuclear theca (GO:0033011), azurophil granule lumen (GO:0035578), sperm midpiece (GO:0097225), sperm principal piece (GO:0097228), sperm head-tail coupling apparatus (GO:0120212), sperm glycocalyx (GO:0120238), nitric-oxide synthase complex (GO:1903958)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| Metabolism | 2 |
| Metabolism of water-soluble vitamins and cofactors | 1 |
| Biological oxidations | 1 |
| Innate Immune System | 1 |
| Immune System | 1 |
| Metabolism of vitamins and cofactors | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 7 |
| cytoplasm | 3 |
| sterol metabolic process | 2 |
| intracellular membrane-bounded organelle | 2 |
| organelle membrane | 2 |
| sperm flagellum | 2 |
| cholesterol metabolic process | 1 |
| sterol biosynthetic process | 1 |
| secondary alcohol biosynthetic process | 1 |
| biosynthetic process | 1 |
| nitric oxide metabolic process | 1 |
| circulatory system process | 1 |
| primary metabolic process | 1 |
| steroid metabolic process | 1 |
| lipid biosynthetic process | 1 |
| lipid metabolic process | 1 |
| secondary alcohol metabolic process | 1 |
| steroid biosynthetic process | 1 |
| oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor | 1 |
| flavin adenine dinucleotide binding | 1 |
| cytochrome-b5 reductase activity, acting on NAD(P)H | 1 |
| binding | 1 |
| catalytic activity | 1 |
| oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor | 1 |
| nitrite reductase activity | 1 |
| intracellular anatomical structure | 1 |
| mitochondrial membrane | 1 |
| organelle outer membrane | 1 |
| endomembrane system | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| intracellular membraneless organelle | 1 |
| cytosol | 1 |
| protein-containing complex | 1 |
| mitochondrion | 1 |
| mitochondrial envelope | 1 |
| cytoskeleton | 1 |
| perinuclear region of cytoplasm | 1 |
| vacuolar lumen | 1 |
| secretory granule lumen | 1 |
Protein interactions and networks
STRING
2012 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CYB5R3 | CYB5A | P00167 | 999 |
| CYB5R3 | CYB5B | O43169 | 993 |
| CYB5R3 | SCD | O00767 | 810 |
| CYB5R3 | CYP51A1 | Q16850 | 777 |
| CYB5R3 | ARSA | P15289 | 774 |
| CYB5R3 | POR | P16435 | 663 |
| CYB5R3 | ACKR5 | O15218 | 652 |
| CYB5R3 | HBA1 | P01922 | 641 |
| CYB5R3 | NOS3 | P29474 | 530 |
| CYB5R3 | SUOX | P51687 | 504 |
| CYB5R3 | HBB | P02023 | 476 |
| CYB5R3 | TK2 | O00142 | 465 |
| CYB5R3 | DHODH | Q02127 | 462 |
| CYB5R3 | MCAT | Q8IVS2 | 452 |
| CYB5R3 | CYCS | P00001 | 452 |
IntAct
288 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CYB5R3 | STOM | psi-mi:“MI:0915”(physical association) | 0.670 |
| CYB5R3 | FUNDC2 | psi-mi:“MI:0915”(physical association) | 0.670 |
| CANX | CYB5R3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM14C | CYB5R3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYB5R3 | AQP6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYB5R3 | ELOVL4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ADAM33 | CYB5R3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CDIPT | CYB5R3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYB5R3 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| VAMP1 | CYB5R3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYB5R3 | TMEM51 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYB5R3 | HSD17B13 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZDHHC15 | CYB5R3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYB5R3 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| CYB5R3 | CERS4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYB5R3 | FAM210B | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYB5R3 | AIG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYB5R3 | LAPTM5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYB5R3 | TMEM115 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYB5R3 | CSGALNACT2 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (415): CYB5R3 (Affinity Capture-RNA), CYB5R3 (Affinity Capture-RNA), CYB5R3 (Affinity Capture-RNA), CYB5R3 (Affinity Capture-MS), CYB5R3 (Affinity Capture-MS), CYB5R3 (Affinity Capture-MS), CYB5R3 (Affinity Capture-MS), CYB5R3 (Affinity Capture-MS), CYB5R3 (Affinity Capture-MS), CYB5R3 (Affinity Capture-MS), ATP5F1 (Co-fractionation), CYB5R3 (Co-fractionation), CYB5R3 (Synthetic Growth Defect), CYB5R3 (Proximity Label-MS), CYB5R3 (Proximity Label-MS)
ESM2 similar proteins: A1C7E9, A1DHW1, A2QCV4, A3GF86, A4QR21, A4R935, A5DQ25, A5DQE4, A5E7U2, A6R2K7, A6ZVM6, A7THS1, A7TNL7, B0CQN7, O74557, P00387, P07514, P0CP14, P0CP15, P20070, P37040, P38626, P83291, Q0CY37, Q0P487, Q0UEY4, Q0X0E5, Q1DWN4, Q27597, Q2UFN3, Q4PGW7, Q4X0B5, Q54NC1, Q59P03, Q5AZB4, Q5BJ68, Q5PQA4, Q6BQ54, Q6BUX2, Q6CA86
Diamond homologs: A0A286R227, A1C7E9, A1DHW1, A2QCV4, A3GF86, A3LT66, A4QR21, A4R935, A5DQ25, A5E7U2, A6R2K7, A6ZVM6, A7TNL7, B0CQN7, O74557, P00387, P07514, P07850, P08509, P08619, P0CP14, P0CP15, P11035, P11605, P11832, P16081, P17569, P17570, P17571, P20070, P22945, P23312, P27783, P27967, P27968, P27969, P36841, P36842, P36858, P36859
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 102 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mitochondrial electron transport, NADH to ubiquinone | 5 | 19.7× | 3e-03 |
| proton motive force-driven mitochondrial ATP synthesis | 5 | 14.5× | 8e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
297 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 23 |
| Likely pathogenic | 10 |
| Uncertain significance | 115 |
| Likely benign | 68 |
| Benign | 46 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1458058 | NM_000398.7(CYB5R3):c.706del (p.Trp236fs) | Pathogenic |
| 1694454 | NM_000398.7(CYB5R3):c.708G>A (p.Trp236Ter) | Pathogenic |
| 234 | NM_000398.7(CYB5R3):c.382T>C (p.Ser128Pro) | Pathogenic |
| 236 | NM_000398.7(CYB5R3):c.446T>C (p.Leu149Pro) | Pathogenic |
| 238 | NM_000398.7(CYB5R3):c.734-1G>T | Pathogenic |
| 239 | NM_000398.7(CYB5R3):c.463+8G>C | Pathogenic |
| 240 | NM_000398.7(CYB5R3):c.655C>T (p.Arg219Ter) | Pathogenic |
| 241 | NM_000398.7(CYB5R3):c.610T>C (p.Cys204Arg) | Pathogenic |
| 242 | NM_000398.7(CYB5R3):c.817_819del (p.Met273del) | Pathogenic |
| 2423026 | NC_000022.10:g.(?43015779)(43015971_?)del | Pathogenic |
| 2423027 | NC_000022.10:g.(?43015779)(43024307_?)del | Pathogenic |
| 243 | NM_000398.7(CYB5R3):c.895_897del (p.Phe299del) | Pathogenic |
| 247 | NM_000398.7(CYB5R3):c.229C>T (p.Gln77Ter) | Pathogenic |
| 248 | NM_000398.7(CYB5R3):c.478C>T (p.Arg160Ter) | Pathogenic |
| 249 | NM_000398.7(CYB5R3):c.611G>A (p.Cys204Tyr) | Pathogenic |
| 3624442 | NM_000398.7(CYB5R3):c.403C>T (p.Gln135Ter) | Pathogenic |
| 4291975 | NM_000398.7(CYB5R3):c.244_245del (p.Ser82fs) | Pathogenic |
| 431812 | NM_000398.7(CYB5R3):c.250C>T (p.Arg84Ter) | Pathogenic |
| 4531856 | NM_000398.7(CYB5R3):c.226G>A (p.Gly76Ser) | Pathogenic |
| 4531857 | NM_000398.7(CYB5R3):c.173G>C (p.Arg58Pro) | Pathogenic |
| 801428 | NM_000398.7(CYB5R3):c.226+2T>C | Pathogenic |
| 827632 | NM_000398.7(CYB5R3):c.103A>C (p.Thr35Pro) | Pathogenic |
| 827633 | NM_000398.7(CYB5R3):c.190C>G (p.Leu64Val) | Pathogenic |
| 1174130 | NM_000398.7(CYB5R3):c.830dup (p.Pro278fs) | Likely pathogenic |
| 1502415 | NM_000398.7(CYB5R3):c.547+1G>A | Likely pathogenic |
| 235 | NM_000398.7(CYB5R3):c.173G>A (p.Arg58Gln) | Likely pathogenic |
| 2430191 | NM_000398.7(CYB5R3):c.274C>T (p.Arg92Trp) | Likely pathogenic |
| 251 | NM_000398.7(CYB5R3):c.763GAG[1] (p.Glu256del) | Likely pathogenic |
| 2664646 | NM_000398.7(CYB5R3):c.508A>G (p.Arg170Gly) | Likely pathogenic |
| 3906148 | NC_000022.11:g.42631838_42638363delins[GTAATCCCAGCAA;42592521_42635366inv;AAGAGTGGGTGGATCACCTGAGGTCAGGAGTGCTAAAC] | Likely pathogenic |
SpliceAI
2089 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 22:42619941:CCAGG:C | acceptor_gain | 1.0000 |
| 22:42619942:CAGG:C | acceptor_gain | 1.0000 |
| 22:42619942:CAGGC:C | acceptor_gain | 1.0000 |
| 22:42619944:GGC:G | acceptor_loss | 1.0000 |
| 22:42619945:GC:G | acceptor_loss | 1.0000 |
| 22:42619946:C:CC | acceptor_gain | 1.0000 |
| 22:42619946:C:T | acceptor_loss | 1.0000 |
| 22:42623785:TCACC:T | donor_loss | 1.0000 |
| 22:42623786:CACCT:C | donor_loss | 1.0000 |
| 22:42623787:A:AC | donor_gain | 1.0000 |
| 22:42623788:C:CC | donor_gain | 1.0000 |
| 22:42623788:CCTT:C | donor_gain | 1.0000 |
| 22:42623885:CGGT:C | acceptor_gain | 1.0000 |
| 22:42623886:GGT:G | acceptor_gain | 1.0000 |
| 22:42623889:C:CC | acceptor_gain | 1.0000 |
| 22:42623890:T:A | acceptor_loss | 1.0000 |
| 22:42628195:A:AC | donor_gain | 1.0000 |
| 22:42628283:T:G | acceptor_loss | 1.0000 |
| 22:42630878:T:TA | donor_gain | 1.0000 |
| 22:42630878:TCACC:T | donor_loss | 1.0000 |
| 22:42630879:CACCT:C | donor_loss | 1.0000 |
| 22:42630880:ACCT:A | donor_loss | 1.0000 |
| 22:42630881:CCTT:C | donor_loss | 1.0000 |
| 22:42630884:TGATG:T | donor_gain | 1.0000 |
| 22:42630984:CTGGC:C | acceptor_gain | 1.0000 |
| 22:42630985:TGGC:T | acceptor_gain | 1.0000 |
| 22:42630987:GC:G | acceptor_gain | 1.0000 |
| 22:42630987:GCCT:G | acceptor_loss | 1.0000 |
| 22:42630988:CC:C | acceptor_gain | 1.0000 |
| 22:42630988:CCT:C | acceptor_loss | 1.0000 |
AlphaMissense
1980 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 22:42628232:G:A | S128F | 0.996 |
| 22:42630892:A:G | L108P | 0.995 |
| 22:42628185:C:G | G144R | 0.994 |
| 22:42628187:C:G | R143P | 0.994 |
| 22:42628252:A:C | F121L | 0.994 |
| 22:42628252:A:T | F121L | 0.994 |
| 22:42628254:A:G | F121L | 0.994 |
| 22:42630882:C:A | K111N | 0.994 |
| 22:42630882:C:G | K111N | 0.994 |
| 22:42619776:G:C | F301L | 0.993 |
| 22:42619776:G:T | F301L | 0.993 |
| 22:42619778:A:G | F301L | 0.993 |
| 22:42631419:A:G | F62S | 0.993 |
| 22:42631422:C:G | R61P | 0.993 |
| 22:42628184:C:T | G144D | 0.992 |
| 22:42630928:G:T | P96H | 0.992 |
| 22:42627320:A:G | L206P | 0.991 |
| 22:42631425:A:G | F60S | 0.991 |
| 22:42631431:C:G | R58P | 0.991 |
| 22:42619859:A:G | C274R | 0.990 |
| 22:42627311:G:T | A209D | 0.990 |
| 22:42627389:C:T | G183D | 0.990 |
| 22:42627616:G:T | A179E | 0.990 |
| 22:42628175:C:T | G147E | 0.990 |
| 22:42631386:A:G | L73P | 0.990 |
| 22:42628232:G:T | S128Y | 0.989 |
| 22:42630935:A:G | Y94H | 0.989 |
| 22:42630973:A:G | L81P | 0.989 |
| 22:42630988:C:T | G76D | 0.989 |
| 22:42619827:G:C | C284W | 0.988 |
dbSNP variants (sampled 300 via entrez): RS1000045604 (22:42644305 G>A,T), RS1000182000 (22:42622199 C>A,T), RS1000267007 (22:42629168 T>C), RS1000331267 (22:42634613 A>C,G), RS1000376010 (22:42635958 T>A), RS1000388107 (22:42650737 C>A,G,T), RS1000458762 (22:42650562 G>T), RS1000476358 (22:42626497 T>A), RS1000506509 (22:42645520 G>A,C), RS1000720378 (22:42640095 A>G), RS1000722480 (22:42635023 G>A), RS1000743071 (22:42649401 G>A,T), RS1000773019 (22:42640348 C>A,T), RS1000862138 (22:42617638 G>A,C), RS1000869830 (22:42622247 A>G)
Disease associations
OMIM: gene MIM:613213 | disease phenotypes: MIM:250800, MIM:117000
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| methemoglobinemia | Definitive | Autosomal recessive |
| methemoglobinemia due to deficiency of methemoglobin reductase | Strong | Autosomal recessive |
| hereditary methemoglobinemia | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| methemoglobinemia due to deficiency of methemoglobin reductase | Definitive | AR |
Mondo (5): methemoglobinemia due to deficiency of methemoglobin reductase (MONDO:0009606), central core myopathy (MONDO:0007294), hereditary methemoglobinemia (MONDO:0018963), intellectual disability (MONDO:0001071), methemoglobinemia (MONDO:0001117)
Orphanet (3): Autosomal recessive methemoglobinemia (Orphanet:621), Central core disease (Orphanet:597), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
36 total (30 of 36 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000252 | Microcephaly |
| HP:0000486 | Strabismus |
| HP:0000565 | Esotropia |
| HP:0000592 | Blue sclerae |
| HP:0000707 | Abnormality of the nervous system |
| HP:0000961 | Cyanosis |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001272 | Cerebellar atrophy |
| HP:0001276 | Hypertonia |
| HP:0001337 | Tremor |
| HP:0001510 | Growth delay |
| HP:0001518 | Small for gestational age |
| HP:0001597 | Abnormal nail morphology |
| HP:0001901 | Polycythemia |
| HP:0002179 | Opisthotonus |
| HP:0002283 | Global brain atrophy |
| HP:0002305 | Athetosis |
| HP:0002315 | Headache |
| HP:0002451 | Limb dystonia |
| HP:0002510 | Spastic tetraplegia |
| HP:0002875 | Exertional dyspnea |
| HP:0006808 | Cerebral hypomyelination |
| HP:0006913 | Frontal cortical atrophy |
| HP:0007112 | Temporal cortical atrophy |
| HP:0010864 | Severe intellectual disability |
| HP:0011344 | Severe global developmental delay |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005023_31 | Initial pursuit acceleration | 8.000000e-10 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008434 | initial pursuit acceleration |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D008708 | Methemoglobinemia | C15.378.619 |
| D020512 | Myopathy, Central Core | C05.651.575.300; C10.668.491.550.300 |
| C580280 | Congenital Methemoglobinemia (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2146 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
4 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs7284807 | CYB5R3 | 0.00 | 0 | ||
| rs8190370 | CYB5R3 | 0.00 | 0 | ||
| rs76458556 | CYB5R3 | 0.00 | 0 | ||
| rs77499608 | CYB5R3 | 0.00 | 0 |
CTD chemical–gene interactions
62 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects expression, decreases expression, increases expression | 3 |
| sodium arsenite | affects expression, increases expression | 3 |
| Valproic Acid | affects cotreatment, increases expression, affects expression, increases methylation | 3 |
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| NAD | affects binding, affects cotreatment, increases reduction | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| Particulate Matter | affects cotreatment, increases abundance, increases expression, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol F | affects cotreatment, increases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| N(4)-hydroxycytidine | affects cotreatment, increases reduction | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| beta-lapachone | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| N(4)-hydroxycytosine | increases reduction, affects cotreatment | 1 |
| ochratoxin A | decreases expression | 1 |
| ciglitazone | affects binding, increases expression | 1 |
| benzamidoxime | affects cotreatment, increases reduction | 1 |
| sulfamethoxazole hydroxylamine | affects cotreatment, increases reduction | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| nutlin 3 | affects cotreatment, increases secretion | 1 |
| ICG 001 | increases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| LDN 193189 | affects cotreatment, increases expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
ChEMBL screening assays
18 unique, capped per target: 18 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4482745 | Binding | Inhibition of N-terminal His6-tagged human Cyb5R3 expressed in Escherichia coli SoluBL21 assessed as reduction in NADH-ferricyanide reductase activity at 500 uM pre-incubated for 15 mins before addition of NADH and potassium ferricyanide by | Targeting cyb5r3 |
Cellosaurus cell lines
3 cell lines: 3 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1M6 | Abcam K-562 CYB5R3 KO | Cancer cell line | Female |
| CVCL_D2IR | Abcam Raji CYB5R3 KO | Cancer cell line | Male |
| CVCL_UQ38 | Abcam Jurkat CYB5R3 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
208 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT02478281 | PHASE1 | COMPLETED | Safety, Tolerability, and Pharmacokinetic Study of Methylene Blue Following a 1 mg/kg Intravenous Dose in Healthy Adults |
| NCT02493283 | PHASE1 | COMPLETED | Pharmacokinetics and Distribution of Dapsone in Leucocytes After Single-dose and Multiple-dose Administration |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT00993694 | Not specified | COMPLETED | Methemoglobinemia in Young Patients With Hematologic Cancer or Aplastic Anemia Treated With Dapsone |
| NCT01402869 | Not specified | COMPLETED | Methemoglobin Levels in Generally Anesthetized Pediatric Dental Patients Receiving Local Anesthetics |
| NCT01766999 | Not specified | COMPLETED | Methemoglobinemia After Liposuction - Diagnostic by Pulse Oximetry and Blood Gas Analysis. |
| NCT03542760 | Not specified | COMPLETED | Acquired Methemoglobinemia Observational Registry |
| NCT06309641 | Not specified | COMPLETED | Methemoglobinemia Following Intravenous Iron Treatment |
| NCT06958822 | Not specified | COMPLETED | Ferric Carboxymaltose Methemoglobinemia Study |
| NCT00272883 | Not specified | RECRUITING | Molecular and Genetic Studies of Congenital Myopathies |
| NCT06157268 | Not specified | RECRUITING | The Natural History and Muscle Fatigability of Patients With Congenital Myopathies. |
| NCT06791369 | Not specified | NOT_YET_RECRUITING | The Prevalence of RYR1-related Disease |
| NCT03479476 | PHASE2/PHASE3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | PHASE1/PHASE2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | EARLY_PHASE1 | RECRUITING | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
| NCT01915381 | Not specified | COMPLETED | Improving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities |
| NCT01988623 | Not specified | COMPLETED | Pivotal Response Treatment for Individuals With Intellectual Disabilities |
| NCT02099773 | Not specified | COMPLETED | Support Staff-client Interactions With Augmentative and Alternative Communication |
| NCT02136849 | Not specified | COMPLETED | Inter-regional Project of the Great Western Exploration Approach for Exome Molecular Causes Severe Intellectual Disability Isolated or Syndromic |
| NCT02225041 | Not specified | COMPLETED | Sedation Strategy and Cognitive Outcome After Critical Illness in Early Childhood |
| NCT02414438 | Not specified | COMPLETED | Establishing the Clinical Utility of First StepDx PLUS and NextStepDx PLUS Study |
| NCT02451761 | Not specified | COMPLETED | Apparently Balanced Chromosomal Translocation/ Next-generation Sequencing/ Intellectual Disability |
Related Atlas pages
- Associated diseases: methemoglobinemia, methemoglobinemia due to deficiency of methemoglobin reductase, hereditary methemoglobinemia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): central core myopathy, hereditary methemoglobinemia, methemoglobinemia, methemoglobinemia due to deficiency of methemoglobin reductase