CYBA
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Also known as p22-PHOXp22phox
Summary
CYBA (cytochrome b-245 alpha chain, HGNC:2577) is a protein-coding gene on chromosome 16q24.2, encoding Cytochrome b-245 light chain (P13498). Subunit of NADPH oxidase complexes that is required for the NADPH oxidase activity that generates, in various cell types, superoxide from molecular oxygen utilizing NADPH as an electron donor.
Cytochrome b is comprised of a light chain (alpha) and a heavy chain (beta). This gene encodes the light, alpha subunit which has been proposed as a primary component of the microbicidal oxidase system of phagocytes. Mutations in this gene are associated with autosomal recessive chronic granulomatous disease (CGD), that is characterized by the failure of activated phagocytes to generate superoxide, which is important for the microbicidal activity of these cells.
Source: NCBI Gene 1535 — RefSeq curated summary.
At a glance
- Gene–disease (curated): granulomatous disease, chronic, autosomal recessive, cytochrome b-negative (Definitive, GenCC) — +1 more curated relationship
- GWAS associations: 2
- Clinical variants (ClinVar): 531 total — 42 pathogenic, 26 likely-pathogenic
- Phenotypes (HPO): 44
- Druggable target: yes
- MANE Select transcript:
NM_000101
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2577 |
| Approved symbol | CYBA |
| Name | cytochrome b-245 alpha chain |
| Location | 16q24.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | p22-PHOX, p22phox |
| Ensembl gene | ENSG00000051523 |
| Ensembl biotype | protein_coding |
| OMIM | 608508 |
| Entrez | 1535 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 16 protein_coding, 3 retained_intron
ENST00000261623, ENST00000562209, ENST00000563526, ENST00000565588, ENST00000566229, ENST00000566534, ENST00000567174, ENST00000568278, ENST00000569359, ENST00000696156, ENST00000696157, ENST00000696158, ENST00000696159, ENST00000696160, ENST00000696161, ENST00000696162, ENST00000696163, ENST00000967612, ENST00000967613
RefSeq mRNA: 1 — MANE Select: NM_000101
NM_000101
CCDS: CCDS32504
Canonical transcript exons
ENST00000261623 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003505980 | 88647101 | 88647175 |
| ENSE00003651677 | 88646755 | 88646838 |
| ENSE00003662503 | 88646116 | 88646197 |
| ENSE00003670274 | 88648045 | 88648114 |
| ENSE00003966246 | 88643289 | 88643571 |
| ENSE00003966247 | 88650956 | 88651053 |
Expression profiles
Bgee: expression breadth ubiquitous, 267 present calls, max score 99.73.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 298.9461 / max 4697.4355, expressed in 1735 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 158554 | 297.8962 | 1735 |
| 158551 | 0.9692 | 482 |
| 158553 | 0.0806 | 23 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| granulocyte | CL:0000094 | 99.73 | gold quality |
| monocyte | CL:0000576 | 99.72 | gold quality |
| leukocyte | CL:0000738 | 99.67 | gold quality |
| mononuclear cell | CL:0000842 | 99.67 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 99.49 | gold quality |
| spleen | UBERON:0002106 | 99.48 | gold quality |
| bone marrow | UBERON:0002371 | 99.06 | gold quality |
| right lung | UBERON:0002167 | 98.97 | gold quality |
| right uterine tube | UBERON:0001302 | 98.91 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 98.82 | gold quality |
| bone marrow cell | CL:0002092 | 98.81 | gold quality |
| upper lobe of lung | UBERON:0008948 | 98.58 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 98.57 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 98.56 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 98.48 | gold quality |
| blood | UBERON:0000178 | 98.33 | gold quality |
| lymph node | UBERON:0000029 | 98.32 | gold quality |
| endometrium epithelium | UBERON:0004811 | 98.32 | gold quality |
| gall bladder | UBERON:0002110 | 98.31 | gold quality |
| transverse colon | UBERON:0001157 | 98.30 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 98.24 | gold quality |
| periodontal ligament | UBERON:0008266 | 98.21 | gold quality |
| metanephros cortex | UBERON:0010533 | 98.08 | gold quality |
| omental fat pad | UBERON:0010414 | 98.07 | gold quality |
| peritoneum | UBERON:0002358 | 97.98 | gold quality |
| minor salivary gland | UBERON:0001830 | 97.77 | gold quality |
| right coronary artery | UBERON:0001625 | 97.75 | gold quality |
| vermiform appendix | UBERON:0001154 | 97.72 | gold quality |
| thoracic aorta | UBERON:0001515 | 97.65 | gold quality |
| ascending aorta | UBERON:0001496 | 97.64 | gold quality |
Single-cell (SCXA)
Detected in 45 experiment(s), a significant marker in 36.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8207 | yes | 4568.64 |
| E-MTAB-8495 | yes | 3329.40 |
| E-MTAB-6701 | yes | 2139.28 |
| E-MTAB-10855 | yes | 1801.12 |
| E-HCAD-6 | yes | 1795.76 |
| E-GEOD-134144 | yes | 1637.49 |
| E-HCAD-8 | yes | 1636.81 |
| E-HCAD-11 | yes | 1634.96 |
| E-MTAB-9841 | yes | 1633.84 |
| E-MTAB-10042 | yes | 1457.84 |
| E-GEOD-124263 | yes | 1451.78 |
| E-GEOD-114530 | yes | 1156.61 |
| E-MTAB-8205 | yes | 499.52 |
| E-MTAB-8381 | yes | 455.18 |
| E-GEOD-111727 | yes | 434.61 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOS, JUN, PPARA, PPARG, RELA, SPI1
Literature-anchored findings (GeneRIF, showing 40)
- Anaplasma phagocytophila causes a change in p22phox. (PMID:11854221)
- p22(phox), gp91(phox), p47(phox), p67(phox), and p40(phox) existed as a functional complex in the cytoskeletal fraction. (PMID:11893732)
- Increased free radical production in hypertension due to increased expression of the NADPH oxidase subunit p22(phox) in lymphoblast cell lines. (PMID:11910303)
- Tumor necrosis factor-alpha increases airway smooth muscle oxidants production through a NADPH oxidase-like system to enhance myosin light chain phosphorylation and contractility. (PMID:11940577)
- mutagenesis of histidine 94 is not required for flavocytochrome b558 function (PMID:12042318)
- A novel and unusual case of chronic granulomatous disease in a child with a homozygous 36-bp deletion in the CYBA gene (A22(0)) leading to the activation of a cryptic splice site in intron 4. (PMID:12073015)
- no association between a genetic variant and the incidence and progression of IgA nephropathy (PMID:12147803)
- Data show that the A640G and the C242T polymorphisms of p22(phox)-based NAD(P)H oxidase were not associated with severity of coronary artery disease and endothelial function. (PMID:12230880)
- In nonatherosclerotic aortic intima, the expression of p22phox by intimal smooth muscle cells is low; aortic fatty streaks contain higher levels of p22phox peptides, mostly localized in macrophages. (PMID:12482831)
- C242T mutation in p22 phox gene is associated with progression of asymptomatic atherosclerosis in type 2 diabetes and is also associated with insulin resistance in nondiabetic subjects. (PMID:12547880)
- decompensated type 2 diabetes is associated with increased NADPH oxidase subunit p22(phox) and hemeoxygenase-1 gene expressions in circulating monocytes (PMID:12679469)
- Identification of a new p22(phox)polymorphism associated with hypertension. (PMID:12729892)
- adenosine pretreatment of fMLF-stimulated neutrophils results in decreased plasma membrane/secretory granule content of the flavocytochrome b components p22phox and gp91phox of the NADPH oxidase, which correlates with inhibition of ROS production (PMID:12772776)
- results suggest that the CYBA C242T polymorphism is involved in NAD(P)H oxidase activity and affects oxidation of lipoproteins by altering the redox state in the vasculature (PMID:12927691)
- highly significant increase in the frequency of the T/T242 genotype in patients with nephropathy compared with those with retinopathy alone or no microvascular disease after 20 years’ diabetes duration (PMID:14578247)
- findings demonstrate that activator protein-1 activation in human smooth muscle cells in response to angiotensin II and platelet-derived growth factor-AA is mediated via generation of p22phox-dependent reactive oxygen species (PMID:14652666)
- NADPH p22phox C242T polymorphisms may be useful in identifying the risk for developing diabetic nephropathy in type 2 diabetic patients. (PMID:14747204)
- Superoxide production was significantly reduced by the C242T , but not the A640G or the -930A/G, polymorphism. Since p22phox exists in both the neutrophil & vessel wall, vascular oxidative stress is likely diminished in individuals with this polymorphism. (PMID:15078863)
- Binding of FAD to cytochrome b558 is facilitated during activation of the phagocyte NADPH oxidase (PMID:15102859)
- No assosication between p22-phox polymorphism and coronary disease in a low-risk Spanish population (PMID:15193812)
- Human p22phox (CYBA) -930A/G polymorphism associates with increased p22phox expression and NADPH oxidase activity in phagocytes of hypertensive patients. (PMID:15210651)
- Hypertensive subjects carrying the GG genotype of the p22phox -930A/G polymorphism are highly exposed to NADPH oxidase-mediated oxidative stress. (PMID:15210651)
- NAD(P)H oxidase activity is associated with increased protein levels of p22phox, p47phox, and p67phox, and increased p22phox and nox2 (gp91phox) mRNA expression. (PMID:15256399)
- significantly reduced at the Anaplasma phagocytophilum phagosome (PMID:15322037)
- p22phox directly interacts with Nox1 and Nox4, to form an superoxide-generating NADPH oxidase. (PMID:15322091)
- The significance of the G(-930)A polymorphism of CYBA in the pathogenesis of hypertension was confirmed; significant effects of the genotype on BP status were observed in the male, but not the female, population (PMID:15671602)
- These findings suggest a positive feedback mechanism whereby reactive oxygen species (ROS), possibly generated by the NADPH oxidase, lead to elevated levels of p22phox and, thus, sustained ROS generation as is observed in endothelial dysfunction. (PMID:15683718)
- Nox3 functions together with p22(phox) as an enzyme constitutively producing superoxide (PMID:15824103)
- The Nox4 requires p22phox for ROS generation and mutational analysis revealed structural requirements affecting expression of the p22phox protein and Nox activity. (PMID:15927447)
- Both regulatory subunit binding-dependent and -independent functions of p22(phox) are implicated in regulating reactive oxygen species production by NADPH oxidase (Nox) subunits (PMID:15994299)
- p22phox polymorphisms, especially A640G, were associated with differential changes in systemic oxidative stress with aerobic exercise training (PMID:16002772)
- the p22(phox) gene has a role in hypertension [review] (PMID:16115038)
- We identified a risk haplotype for nondiabetic end-stage renal disease in the CYBA gene using haplotype analysis. (PMID:16215641)
- Increased expression and activity of NAD(P)H oxidase subunits and xanthine oxidase, in part mediated through angiotensin II and PKC-dependent pathways, are important mechanisms underlying increased oxidative stress in human coronary artery disease (PMID:16293794)
- the C-terminal alpha-helical region of the p22phox peptide increases the binding affinity for the tandem SH3 domains of p47phox more than 10-fold (PMID:16326715)
- the CT+TT genotypes were independently associated with a higher risk of having overt nephropathy among smokers [odds ratio (OR)=6.76, 95% confidence interval (95% CI) 1.83-25.02]. (PMID:16358232)
- Pro152, Pro156 & Arg158 in the p22phox PRR are indispensable for interaction with p47phox. A region C-terminal to the PRR of p22phox (AA161-164), in an a-helical conformation, aids in full oxidase activation via the association with p47phox SH3. (PMID:16460309)
- In EH p22(phox) and PAI-1 mRNA and protein level was increased compared with C. In EH + D, doxazosin reduced p22(phox) and PAI-1 gene and protein expression, which was similar to that of C. (PMID:16546843)
- The results from this study reveal that cannabidiol, acting through CB2 and regulation of Nox4 and p22(phox) expression, may be a novel and highly selective treatment for leukemia. (PMID:16754784)
- These results support the increased risk of developing early coronary artery disease and of having rapid progression of coronary stenosis in subjects carrying the C242T nucleotide transition among the Italian population. (PMID:16788250)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cyba | ENSDARG00000018283 |
| mus_musculus | Cyba | ENSMUSG00000006519 |
| rattus_norvegicus | Cyba | ENSRNOG00000013014 |
Protein
Protein identifiers
Cytochrome b-245 light chain — P13498 (reviewed: P13498)
Alternative names: Cytochrome b(558) alpha chain, Cytochrome b558 subunit alpha, Neutrophil cytochrome b 22 kDa polypeptide, Superoxide-generating NADPH oxidase light chain subunit, p22 phagocyte B-cytochrome, p22-phox
All UniProt accessions (14): A0A8Q3SIH4, A0A8Q3SIJ9, A0A8Q3SJ80, A0A8Q3WL14, A0A8Q3WL20, A0A8Q3WL26, A0A8Q3WL27, A0A8Q3WLM1, P13498, H3BNP7, H3BPX1, H3BPZ7, H3BR52, H3BT77
UniProt curated annotations — full annotation on UniProt →
Function. Subunit of NADPH oxidase complexes that is required for the NADPH oxidase activity that generates, in various cell types, superoxide from molecular oxygen utilizing NADPH as an electron donor. Subunit of the phagocyte NADPH oxidase complex that mediates the transfer of electrons from cytosolic NADPH to O2 to produce the superoxide anion (O2(-)). In the activated complex, electrons are first transferred from NADPH to flavin adenine dinucleotide (FAD) and subsequently transferred via two heme molecules to molecular oxygen, producing superoxide through an outer-sphere reaction. Activation of the NADPH oxidase complex is initiated by the assembly of cytosolic subunits of the NADPH oxidase complex with the core NADPH oxidase complex to form a complex at the plasma membrane or phagosomal membrane. This activation process is initiated by phosphorylation dependent binding of the cytosolic NCF1/p47-phox subunit to the C-terminus of CYBA/p22-phox. Aassociates with NOX3 to form a functional NADPH oxidase constitutively generating superoxide.
Subunit / interactions. Component of the phagocyte NADPH oxidase core complex/cytochrome b558 complex, composed of CYBB (heavy chain (beta)) and CYBA (light chain (alpha)). Component of the phagocyte NADPH oxidase complex composed of an obligatory core heterodimer formed by the membrane proteins CYBA and CYBB and the cytosolic regulatory subunits NCF1/p47-phox, NCF2/p67-phox, NCF4/p40-phox and the small GTPase RAC1 or RAC2. Interacts with NCF1 (via SH3 domain). Interacts with SH3PXD2A. Interacts with DUOX1, DUOX2 and TPO. Interacts with NOX4; this interaction mediates superoxide generation. Interacts with calprotectin (S100A8/9). Interacts with GBP7. Interacts with NOXO1. Forms a heterodimer with NOX3 and is essential for activity and cell membrane localization of NOX3. Interacts with NOX1.
Subcellular location. Cell membrane.
Post-translational modifications. Phosphorylation at Thr-147 enhances NADPH oxidase activity by promoting NCF1/p47-phox binding. Ubiquitinated at Lys-149 likely by RNF145.
Disease relevance. Granulomatous disease, chronic, autosomal recessive, 4 (CGD4) [MIM:233690] A form of chronic granulomatous disease, a primary immunodeficiency characterized by severe recurrent bacterial and fungal infections, along with manifestations of chronic granulomatous inflammation. It results from an impaired ability of phagocytes to mount a burst of reactive oxygen species in response to pathogens. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the p22phox family.
RefSeq proteins (1): NP_000092* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR007732 | Cyt_b558_asu | Family |
Pfam: PF05038
UniProt features (43 total): sequence variant 16, helix 8, topological domain 6, transmembrane region 4, modified residue 2, initiator methionine 1, chain 1, region of interest 1, cross-link 1, mutagenesis site 1, strand 1, intramembrane region 1
Structure
Experimental structures (PDB)
7 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7YXW | X-RAY DIFFRACTION | 2.5 |
| 8WEJ | ELECTRON MICROSCOPY | 2.79 |
| 8X2L | ELECTRON MICROSCOPY | 2.99 |
| 7U8G | ELECTRON MICROSCOPY | 3.2 |
| 8GZ3 | ELECTRON MICROSCOPY | 3.3 |
| 8KEI | ELECTRON MICROSCOPY | 3.56 |
| 1WLP | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P13498-F1 | 77.28 | 0.40 |
Antibody-complex structures (SAbDab): 5 — 7U8G, 8GZ3, 8KEI, 8WEJ, 8X2L
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 147, 168, 149
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 157 | loss of interaction with noxo1. |
Function
Pathways and Gene Ontology
Reactome pathways
10 pathways
| ID | Pathway |
|---|---|
| R-HSA-1222556 | ROS and RNS production in phagocytes |
| R-HSA-1236973 | Cross-presentation of particulate exogenous antigens (phagosomes) |
| R-HSA-3299685 | Detoxification of Reactive Oxygen Species |
| R-HSA-4420097 | VEGFA-VEGFR2 Pathway |
| R-HSA-5668599 | RHO GTPases Activate NADPH Oxidases |
| R-HSA-6798695 | Neutrophil degranulation |
| R-HSA-9013149 | RAC1 GTPase cycle |
| R-HSA-9013404 | RAC2 GTPase cycle |
| R-HSA-9013423 | RAC3 GTPase cycle |
| R-HSA-9673324 | WNT5:FZD7-mediated leishmania damping |
MSigDB gene sets: 555 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_DN, MODULE_93, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_RESPONSE_TO_IONIZING_RADIATION, REACTOME_INNATE_IMMUNE_SYSTEM, GRUETZMANN_PANCREATIC_CANCER_DN, GOBP_POSITIVE_REGULATION_OF_ENDOCYTOSIS, MCLACHLAN_DENTAL_CARIES_UP, GOBP_REGULATION_OF_BLOOD_PRESSURE, GOBP_CIRCULATORY_SYSTEM_PROCESS, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_ACID_CHEMICAL, GOBP_INFLAMMATORY_RESPONSE, GOBP_RESPONSE_TO_PEPTIDE, GOBP_CELLULAR_RESPONSE_TO_LIPID
GO Biological Process (38): response to hypoxia (GO:0001666), positive regulation of endothelial cell proliferation (GO:0001938), negative regulation of glomerular filtration by angiotensin (GO:0003106), superoxide metabolic process (GO:0006801), inflammatory response (GO:0006954), response to xenobiotic stimulus (GO:0009410), response to activity (GO:0014823), smooth muscle hypertrophy (GO:0014895), cytochrome complex assembly (GO:0017004), positive regulation of cell growth (GO:0030307), response to nutrient levels (GO:0031667), positive regulation of interleukin-6 production (GO:0032755), positive regulation of tumor necrosis factor production (GO:0032760), positive regulation of superoxide anion generation (GO:0032930), positive regulation of toll-like receptor 2 signaling pathway (GO:0034137), superoxide anion generation (GO:0042554), innate immune response (GO:0045087), respiratory burst (GO:0045730), positive regulation of smooth muscle cell proliferation (GO:0048661), hydrogen peroxide biosynthetic process (GO:0050665), positive regulation of phagocytosis (GO:0050766), regulation of release of sequestered calcium ion into cytosol (GO:0051279), establishment of localization in cell (GO:0051649), mucus secretion (GO:0070254), positive regulation of mucus secretion (GO:0070257), response to interleukin-1 (GO:0070555), cellular response to mechanical stimulus (GO:0071260), cellular response to glucose stimulus (GO:0071333), cellular response to tumor necrosis factor (GO:0071356), cellular response to gamma radiation (GO:0071480), positive regulation of defense response to bacterium (GO:1900426), positive regulation of reactive oxygen species biosynthetic process (GO:1903428), response to aldosterone (GO:1904044), cellular response to angiotensin (GO:1904385), cellular response to phorbol 13-acetate 12-myristate (GO:1904628), cellular response to L-glutamine (GO:1904845), positive regulation of blood pressure (GO:0045777), reactive oxygen species metabolic process (GO:0072593)
GO Molecular Function (8): electron transfer activity (GO:0009055), superoxide-generating NAD(P)H oxidase activity (GO:0016175), SH3 domain binding (GO:0017124), heme binding (GO:0020037), metal ion binding (GO:0046872), protein heterodimerization activity (GO:0046982), protein binding (GO:0005515), oxidoreductase activity (GO:0016491)
GO Cellular Component (16): stress fiber (GO:0001725), endosome (GO:0005768), endoplasmic reticulum membrane (GO:0005789), plasma membrane (GO:0005886), focal adhesion (GO:0005925), membrane (GO:0016020), apical plasma membrane (GO:0016324), secretory granule (GO:0030141), dendrite (GO:0030425), phagocytic vesicle membrane (GO:0030670), specific granule membrane (GO:0035579), NADPH oxidase complex (GO:0043020), neuronal cell body (GO:0043025), tertiary granule membrane (GO:0070821), perinuclear endoplasmic reticulum (GO:0097038), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-7 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase cycle | 3 |
| Innate Immune System | 2 |
| Antigen processing-Cross presentation | 1 |
| Cellular response to chemical stress | 1 |
| Signaling by VEGF | 1 |
| RHO GTPase Effectors | 1 |
| Killing mechanisms | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| response to stimulus | 2 |
| endomembrane system | 2 |
| secretory granule membrane | 2 |
| response to stress | 1 |
| response to decreased oxygen levels | 1 |
| endothelial cell proliferation | 1 |
| regulation of endothelial cell proliferation | 1 |
| positive regulation of epithelial cell proliferation | 1 |
| negative regulation of renal output by angiotensin | 1 |
| negative regulation of glomerular filtration | 1 |
| reactive oxygen species metabolic process | 1 |
| defense response | 1 |
| response to chemical | 1 |
| smooth muscle adaptation | 1 |
| muscle hypertrophy | 1 |
| protein-containing complex assembly | 1 |
| regulation of cell growth | 1 |
| cell growth | 1 |
| positive regulation of growth | 1 |
| positive regulation of cellular process | 1 |
| positive regulation of cytokine production | 1 |
| interleukin-6 production | 1 |
| regulation of interleukin-6 production | 1 |
| tumor necrosis factor production | 1 |
| regulation of tumor necrosis factor production | 1 |
| positive regulation of tumor necrosis factor superfamily cytokine production | 1 |
| regulation of superoxide anion generation | 1 |
| superoxide anion generation | 1 |
| positive regulation of reactive oxygen species metabolic process | 1 |
| toll-like receptor 2 signaling pathway | 1 |
| regulation of toll-like receptor 2 signaling pathway | 1 |
| positive regulation of pattern recognition receptor signaling pathway | 1 |
| superoxide metabolic process | 1 |
| immune response | 1 |
| defense response to symbiont | 1 |
| metabolic process | 1 |
| positive regulation of cell population proliferation | 1 |
| smooth muscle cell proliferation | 1 |
| regulation of smooth muscle cell proliferation | 1 |
Protein interactions and networks
STRING
1550 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CYBA | CYBB | P04839 | 999 |
| CYBA | NCF1 | P14598 | 999 |
| CYBA | NCF2 | P19878 | 999 |
| CYBA | NCF4 | Q15080 | 999 |
| CYBA | NOXA1 | Q86UR1 | 999 |
| CYBA | NOX1 | Q9Y5S8 | 999 |
| CYBA | NOXO1 | Q8NFA2 | 998 |
| CYBA | NOX4 | Q9NPH5 | 998 |
| CYBA | NOX3 | Q9HBY0 | 996 |
| CYBA | RAC2 | P15153 | 996 |
| CYBA | POLDIP2 | Q9Y2S7 | 994 |
| CYBA | AKT1 | P31749 | 992 |
| CYBA | NOX5 | Q96PH1 | 989 |
| CYBA | DUOX1 | Q9NRD9 | 956 |
| CYBA | RAP1A | P10113 | 947 |
IntAct
67 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NCF1 | CYBA | psi-mi:“MI:0407”(direct interaction) | 0.740 |
| CYBA | NCF1 | psi-mi:“MI:0407”(direct interaction) | 0.740 |
| CYBA | NOXO1 | psi-mi:“MI:0407”(direct interaction) | 0.710 |
| NOXO1 | CYBA | psi-mi:“MI:0407”(direct interaction) | 0.710 |
| SLC12A2 | CLGN | psi-mi:“MI:0914”(association) | 0.640 |
| SLC2A12 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM184A | SLC33A1 | psi-mi:“MI:0914”(association) | 0.530 |
| EVA1C | STK25 | psi-mi:“MI:0914”(association) | 0.530 |
| RPS2 | MPHOSPH10 | psi-mi:“MI:0914”(association) | 0.530 |
| MDFI | CYBA | psi-mi:“MI:0915”(physical association) | 0.490 |
| RFK | CYBA | psi-mi:“MI:0914”(association) | 0.460 |
| NCF4 | CYBA | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CYBA | NCF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NOXO1 | CYBA | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CYBA | NOXO1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CYBA | CPT1A | psi-mi:“MI:0915”(physical association) | 0.370 |
| RCHY1 | CYBA | psi-mi:“MI:0915”(physical association) | 0.370 |
| TNFRSF1A | CYBB | psi-mi:“MI:0914”(association) | 0.350 |
| CYBA | TNFRSF1A | psi-mi:“MI:0914”(association) | 0.350 |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| MYC | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (82): PSMA3 (Two-hybrid), RBPMS (Two-hybrid), CYBA (Affinity Capture-MS), APPBP2 (Two-hybrid), APPBP2 (Reconstituted Complex), APPBP2 (Far Western), APPBP2 (Affinity Capture-Western), CYBA (Affinity Capture-MS), CYBA (Affinity Capture-Western), CYBA (Affinity Capture-Western), CYBA (Co-fractionation), BCAP31 (Co-fractionation), CYBA (Co-fractionation), CYBA (Reconstituted Complex), CYBA (Proximity Label-MS)
ESM2 similar proteins: A1CKG4, A1D708, A2XSY1, A4R2N5, A6QRX6, A6RRF7, A7EMV1, B0XXU1, B2AR67, O46521, O95214, O95807, P13498, P52650, Q0CNZ5, Q0JDK9, Q0V0G4, Q17QF8, Q1E1E0, Q28F21, Q2GSS4, Q32PD8, Q39080, Q3ZBX1, Q4WXT2, Q566G2, Q5PQQ4, Q5R5Z8, Q5RDE9, Q61462, Q62737, Q6CC06, Q6GM42, Q6GPA8, Q6P0C7, Q6PDU4, Q7S693, Q8K3C0, Q8TAC9, Q92535
Diamond homologs: O46521, P13498, P52650, Q61462, Q62737, Q95L73, Q95MN4, Q9N2H0, Q867X6
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| NCF1 | “up-regulates activity” | CYBA | binding |
| CYBA | “form complex” | “Phagocyte NADPH oxidase complex” | binding |
| PRKCA | up-regulates | CYBA | phosphorylation |
| PRKCD | up-regulates | CYBA | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 81 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| RAC3 GTPase cycle | 5 | 11.2× | 7e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| superoxide anion generation | 5 | 45.5× | 4e-05 |
| response to xenobiotic stimulus | 7 | 6.5× | 1e-02 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
531 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 42 |
| Likely pathogenic | 26 |
| Uncertain significance | 146 |
| Likely benign | 245 |
| Benign | 26 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1032885 | NM_000101.4(CYBA):c.393G>A (p.Trp131Ter) | Pathogenic |
| 1071345 | NM_000101.4(CYBA):c.111C>G (p.Tyr37Ter) | Pathogenic |
| 1072119 | NM_000101.4(CYBA):c.166dup (p.Arg56fs) | Pathogenic |
| 1074797 | NC_000016.9:g.(?88713499)(88714532_?)del | Pathogenic |
| 1371434 | NM_000101.4(CYBA):c.399del (p.Ile134fs) | Pathogenic |
| 1429693 | NC_000016.9:g.(?88713499)(88718353_?)del | Pathogenic |
| 1458360 | NC_000016.9:g.(?88717354)(88718353_?)del | Pathogenic |
| 1458496 | NM_000101.4(CYBA):c.17G>A (p.Trp6Ter) | Pathogenic |
| 1458628 | NC_000016.9:g.(?88712514)(88718096_?)del | Pathogenic |
| 1489230 | NM_000101.4(CYBA):c.59-2A>T | Pathogenic |
| 1967713 | NM_000101.4(CYBA):c.68_76del (p.Thr23_Gly25del) | Pathogenic |
| 2256 | NC_000016.10:g.(?_88638115)(88648115_88650955)del | Pathogenic |
| 2262 | NM_000101.4(CYBA):c.287+1G>A | Pathogenic |
| 2264 | NM_000101.4(CYBA):c.7C>T (p.Gln3Ter) | Pathogenic |
| 2266 | NM_000101.4(CYBA):c.288-13_310del | Pathogenic |
| 2267 | NM_000101.4(CYBA):c.373G>A (p.Ala125Thr) | Pathogenic |
| 2736377 | NM_000101.4(CYBA):c.107G>A (p.Trp36Ter) | Pathogenic |
| 2755870 | NM_000101.4(CYBA):c.109dup (p.Tyr37fs) | Pathogenic |
| 2817163 | NM_000101.4(CYBA):c.18G>A (p.Trp6Ter) | Pathogenic |
| 2907500 | NM_000101.4(CYBA):c.246_273del (p.Phe83fs) | Pathogenic |
| 2968090 | NM_000101.4(CYBA):c.467del (p.Pro156fs) | Pathogenic |
| 3008362 | NM_000101.4(CYBA):c.103C>T (p.Gln35Ter) | Pathogenic |
| 3065668 | NM_000101.4(CYBA):c.369+1G>T | Pathogenic |
| 3243439 | NC_000016.9:g.(?88709761)(88717421_?)del | Pathogenic |
| 3243440 | NC_000016.9:g.(?88713143)(88717421_?)del | Pathogenic |
| 3640816 | NM_000101.4(CYBA):c.433G>T (p.Gly145Ter) | Pathogenic |
| 3725589 | NM_000101.4(CYBA):c.288-2A>G | Pathogenic |
| 4535536 | NC_000016.9:g.(?88709696)(88717462_?)del | Pathogenic |
| 4817432 | NM_000101.4(CYBA):c.58+2T>G | Pathogenic |
| 596212 | NM_000101.4(CYBA):c.415del (p.Arg139fs) | Pathogenic |
SpliceAI
1427 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:88646111:CTCA:C | donor_loss | 1.0000 |
| 16:88646112:TCA:T | donor_loss | 1.0000 |
| 16:88646113:CACCA:C | donor_loss | 1.0000 |
| 16:88646115:C:CA | donor_loss | 1.0000 |
| 16:88646753:A:AC | donor_gain | 1.0000 |
| 16:88646754:C:CC | donor_gain | 1.0000 |
| 16:88650954:A:AC | donor_gain | 1.0000 |
| 16:88650955:C:CC | donor_gain | 1.0000 |
| 16:88650955:CT:C | donor_gain | 1.0000 |
| 16:88646110:ACTCA:A | donor_loss | 0.9900 |
| 16:88646114:A:AC | donor_gain | 0.9900 |
| 16:88646115:C:CC | donor_gain | 0.9900 |
| 16:88646194:GAGC:G | acceptor_gain | 0.9900 |
| 16:88646195:AGCCT:A | acceptor_loss | 0.9900 |
| 16:88646196:GC:G | acceptor_gain | 0.9900 |
| 16:88646196:GCCTG:G | acceptor_loss | 0.9900 |
| 16:88646197:CC:C | acceptor_gain | 0.9900 |
| 16:88646198:C:CC | acceptor_gain | 0.9900 |
| 16:88646198:CT:C | acceptor_loss | 0.9900 |
| 16:88646199:T:C | acceptor_loss | 0.9900 |
| 16:88646209:CGGG:C | acceptor_gain | 0.9900 |
| 16:88646210:G:T | acceptor_gain | 0.9900 |
| 16:88646836:CCC:C | acceptor_gain | 0.9900 |
| 16:88646837:CC:C | acceptor_gain | 0.9900 |
| 16:88646837:CCC:C | acceptor_gain | 0.9900 |
| 16:88646838:CC:C | acceptor_gain | 0.9900 |
| 16:88647182:CCA:C | acceptor_gain | 0.9900 |
| 16:88647183:C:CT | acceptor_gain | 0.9900 |
| 16:88647184:A:C | acceptor_gain | 0.9900 |
| 16:88648115:C:CC | acceptor_gain | 0.9900 |
AlphaMissense
1231 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:88643548:C:A | W131C | 0.999 |
| 16:88643548:C:G | W131C | 0.999 |
| 16:88643550:A:G | W131R | 0.999 |
| 16:88643550:A:T | W131R | 0.999 |
| 16:88646131:G:C | S118R | 0.999 |
| 16:88646131:G:T | S118R | 0.999 |
| 16:88646133:T:G | S118R | 0.999 |
| 16:88646157:C:A | G110W | 0.999 |
| 16:88646157:C:G | G110R | 0.999 |
| 16:88646157:C:T | G110R | 0.999 |
| 16:88650987:C:A | W9C | 0.999 |
| 16:88650987:C:G | W9C | 0.999 |
| 16:88650989:A:G | W9R | 0.999 |
| 16:88650989:A:T | W9R | 0.999 |
| 16:88650998:A:G | W6R | 0.999 |
| 16:88650998:A:T | W6R | 0.999 |
| 16:88646156:C:T | G110E | 0.998 |
| 16:88647168:C:G | G46R | 0.998 |
| 16:88648100:C:G | G25R | 0.998 |
| 16:88650962:C:G | G18R | 0.998 |
| 16:88650996:C:A | W6C | 0.998 |
| 16:88650996:C:G | W6C | 0.998 |
| 16:88646144:A:G | L114P | 0.997 |
| 16:88647144:A:C | Y54D | 0.997 |
| 16:88647167:C:T | G46D | 0.997 |
| 16:88648074:G:C | F33L | 0.997 |
| 16:88648074:G:T | F33L | 0.997 |
| 16:88648076:A:G | F33L | 0.997 |
| 16:88650961:C:T | G18D | 0.997 |
| 16:88650980:C:T | E12K | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000166971 (16:88645769 C>T), RS1000370025 (16:88648463 C>A,T), RS1000510917 (16:88652000 A>C,G), RS1000603799 (16:88644512 G>A,C,T), RS1000667256 (16:88652372 A>T), RS1001429506 (16:88652603 C>T), RS1001520966 (16:88652743 T>C), RS1001664999 (16:88646162 A>G,T), RS1001706757 (16:88653021 G>A), RS1001725744 (16:88649145 G>A,C,T), RS1001727646 (16:88644772 C>T), RS1001762932 (16:88649655 G>A), RS1001791471 (16:88643302 G>A,C,T), RS1001843742 (16:88643161 G>A), RS1002098279 (16:88650417 G>A)
Disease associations
OMIM: gene MIM:608508 | disease phenotypes: MIM:233690, MIM:306400, MIM:240300, MIM:138990
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| granulomatous disease, chronic, autosomal recessive, cytochrome b-negative | Definitive | Autosomal recessive |
| chronic granulomatous disease | Supportive | Autosomal recessive |
Mondo (4): granulomatous disease, chronic, autosomal recessive, cytochrome b-negative (MONDO:0009308), chronic granulomatous disease (MONDO:0018305), autoimmune polyendocrine syndrome type 1 (MONDO:0009411), granulomatous disease, chronic, X-linked (MONDO:0010600)
Orphanet (2): Chronic granulomatous disease (Orphanet:379), Autoimmune polyendocrinopathy type 1 (Orphanet:3453)
HPO phenotypes
44 total (30 of 44 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000230 | Gingivitis |
| HP:0000246 | Sinusitis |
| HP:0000388 | Otitis media |
| HP:0000964 | Eczematoid dermatitis |
| HP:0000992 | Cutaneous photosensitivity |
| HP:0001034 | Hypermelanotic macule |
| HP:0001287 | Meningitis |
| HP:0001744 | Splenomegaly |
| HP:0001874 | Abnormality of neutrophils |
| HP:0001945 | Fever |
| HP:0002021 | Pyloric stenosis |
| HP:0002024 | Malabsorption |
| HP:0002205 | Recurrent respiratory infections |
| HP:0002240 | Hepatomegaly |
| HP:0002575 | Tracheoesophageal fistula |
| HP:0002716 | Lymphadenopathy |
| HP:0002721 | Immunodeficiency |
| HP:0002723 | Absence of bactericidal oxidative respiratory burst in phagocytes |
| HP:0002724 | Recurrent Aspergillus infections |
| HP:0002726 | Recurrent Staphylococcus aureus infections |
| HP:0002740 | Recurrent E. coli infections |
| HP:0002741 | Recurrent Serratia marcescens infections |
| HP:0002742 | Recurrent Klebsiella infections |
| HP:0002754 | Osteomyelitis |
| HP:0002840 | Lymphadenitis |
| HP:0002842 | Recurrent Burkholderia cepacia infections |
| HP:0002955 | Granulomatosis |
| HP:0003203 | Decreased neutrophil oxidative burst |
| HP:0003206 | Decreased activity of NADPH oxidase |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002390_5 | Glycated hemoglobin levels | 1.000000e-08 |
| GCST003479_9 | Hair color | 1.000000e-07 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004541 | HbA1c measurement |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006105 | Granulomatous Disease, Chronic | C15.378.553.774.535; C16.320.322.233; C20.673.774.535; C23.550.291.500.423 |
| C564210 | Granulomatous Disease, Chronic, Autosomal Dominant Type (supp.) | |
| C565533 | Granulomatous Disease, Chronic, Autosomal Recessive, Cytochrome B-Negative (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL1613744 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
4 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs4673 | Other | 3 | simvastatin | Hypercholesterolemia |
| rs4673 | Toxicity | 3 | doxorubicin;idarubicin | Neoplasms |
| rs4673 | Efficacy,Toxicity | 3 | doxorubicin;idarubicin | Neoplasms |
| rs4673 | Toxicity | 3 | cisplatin;doxorubicin | Anemia;Mucositis;Osteosarcoma |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs4673 | CYBA | 3 | 5.25 | 4 | doxorubicin;idarubicin;simvastatin;cisplatin;doxorubicin |
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.14 | Kd | 7281 | nM | CHEMBL5653589 |
| 5.14 | ED50 | 7281 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148186: Binding affinity to human CYBA incubated for 45 mins by Kinobead based pull down assay | kd | 7.2815 | uM |
CTD chemical–gene interactions
101 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Tretinoin | increases expression | 4 |
| sodium arsenite | affects cotreatment, decreases expression, increases expression | 3 |
| Acetaminophen | affects cotreatment, increases expression, decreases expression | 3 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 3 |
| Glucose | increases expression, decreases expression, decreases reaction | 3 |
| Tetrachlorodibenzodioxin | increases expression | 3 |
| Tetradecanoylphorbol Acetate | decreases reaction, increases expression, affects reaction, decreases expression, increases reaction (+1 more) | 3 |
| Aflatoxin B1 | decreases expression, increases expression | 3 |
| lasiocarpine | decreases expression | 2 |
| methyleugenol | decreases expression | 2 |
| ochratoxin A | increases acetylation, increases expression | 2 |
| chloropicrin | affects expression, decreases expression | 2 |
| Arsenic Trioxide | increases expression | 2 |
| Arsenic | affects response to substance | 2 |
| Estradiol | increases expression | 2 |
| Hydrogen Peroxide | decreases reaction, increases expression | 2 |
| Lipopolysaccharides | increases secretion, affects cotreatment, increases expression, affects reaction | 2 |
| N-Nitrosopyrrolidine | decreases expression | 2 |
| Plant Extracts | decreases reaction, increases expression, increases reaction | 2 |
| Quercetin | decreases reaction, increases expression | 2 |
| Superoxides | increases abundance, increases reaction | 2 |
| Tobacco Smoke Pollution | increases expression, increases reaction | 2 |
| Valproic Acid | increases expression, increases methylation | 2 |
| Cyclosporine | decreases reaction, decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| testosterone enanthate | affects expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| naringin | decreases reaction, increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| 2,2’-methylenebis(4-methyl-6-tert-butylphenol) | affects expression, affects response to substance | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651228 | Binding | Binding affinity to human CYBA incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
4 cell lines: 3 spontaneously immortalized cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2VH | Abcam HEK293T CYBA KO | Transformed cell line | Female |
| CVCL_V326 | CHO-22 | Spontaneously immortalized cell line | Female |
| CVCL_V328 | CHO-91-22 | Spontaneously immortalized cell line | Female |
| CVCL_V329 | CHO-91-22-47-67 | Spontaneously immortalized cell line | Female |
Clinical trials (associated diseases)
69 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00001317 | PHASE4 | COMPLETED | A Phase IV Study of Recombinant Human Gamma Interferon in Patients With Chronic Granulomatous Diseases of Childhood |
| NCT00023192 | PHASE3 | COMPLETED | Treatment of Chronic Granulomatous Disease With Allogeneic Stem Cell Transplantation Versus Standard of Care |
| NCT00033982 | PHASE3 | COMPLETED | Posaconazole to Treat Invasive Fungal Infections |
| NCT00006417 | PHASE2 | COMPLETED | Modified Stem Cell Transplantation Procedure for Treating Chronic Granulomatous Disease |
| NCT00578643 | PHASE2 | COMPLETED | Matched Unrelated or Non-Genotype Identical Related Donor Transplantation For Chronic Granulomatous Disease |
| NCT00799071 | PHASE2 | COMPLETED | Pharmacokinetics of Posaconazole in Children With Chronic Granulomatous Disease (CGD) |
| NCT01821781 | PHASE2 | ACTIVE_NOT_RECRUITING | Immune Disorder HSCT Protocol |
| NCT01998633 | PHASE2 | COMPLETED | Reduced Intensity Conditioning for Hemophagocytic Syndromes or Selected Primary Immune Deficiencies (BMT CTN 1204) |
| NCT02512679 | PHASE2 | TERMINATED | Related Hematopoietic Stem Cell Transplantation (HSCT) for Genetic Diseases of Blood Cells |
| NCT03333486 | PHASE2 | TERMINATED | Fludarabine Phosphate, Cyclophosphamide, Total Body Irradiation, and Donor Stem Cell Transplant in Treating Patients With Blood Cancer |
| NCT03547830 | PHASE2 | UNKNOWN | Plerixafor/G-CSF as Additional Agents for Conditioning Before HSCT in CGD Patients |
| NCT03983837 | PHASE2 | COMPLETED | Elemental Diet for Treatment of Inflammatory Bowel Disease in Patients With Chronic Granulomatous Disease |
| NCT07284641 | PHASE2 | RECRUITING | Hematopoietic Stem Cell Transplantation (HSCT) for Common Variable Immunodeficiency (CVID) and Other Autoimmune Manifestations of Primary Immune Regulatory Disorders (PIRD) |
| NCT00743782 | PHASE2 | COMPLETED | Comparing Pump With Subcutaneous Injection Delivery of PTH 1-34 in the Management of Chronic Hypoparathyroidism |
| NCT05398809 | PHASE2 | RECRUITING | Evaluate the Efficacy and Safety of Ruxolitinib on Hair Regrowth in Patients With Autoimmune Polyendocrinopathy Candidiasis Ectodermal Dystrophy (APECED)-Associated Alopecia Areata |
| NCT00001476 | PHASE1 | COMPLETED | Gene Therapy for Chronic Granulomatous Diseases - Long-term Follow-up |
| NCT00001515 | PHASE1 | COMPLETED | Diagnostic Effectiveness of Virtual Bronchoscopy |
| NCT00001765 | PHASE1 | COMPLETED | Stem Cell Transplant Following Low-Intensity Chemotherapy to Treat Chronic Granulomatous Disease |
| NCT01917708 | PHASE1 | COMPLETED | Bone Marrow Transplant With Abatacept for Non-Malignant Diseases |
| NCT02609932 | PHASE1 | COMPLETED | Effect of IFN-γ on Innate Immune Cells |
| NCT05189925 | PHASE1 | RECRUITING | NADPH Oxidase Correction in mRNA-transfected Granulocyte-enriched Cells in Chronic Granulomatous Disease (CGD) |
| NCT03984890 | PHASE2/PHASE3 | COMPLETED | Vitamin D3 For CGD Patients With BCGosis/Itis |
| NCT00325078 | PHASE1/PHASE2 | TERMINATED | Infliximab to Treat Crohn’S-like Inflammatory Bowel Disease in Chronic Granulomatous Disease |
| NCT00564759 | PHASE1/PHASE2 | UNKNOWN | Gene Therapy for Chronic Granulomatous Disease |
| NCT00778882 | PHASE1/PHASE2 | WITHDRAWN | Gene Therapy for Chronic Granulomatous Disease in Korea |
| NCT00927134 | PHASE1/PHASE2 | COMPLETED | Gene Therapy for X-linked Chronic Granulomatous Disease (CGD) in Children |
| NCT01338675 | PHASE1/PHASE2 | UNKNOWN | Targeted Busulfan, Fludarabine Conditioning Regimen for Hematopoietic Stem Cell Transplantation in Chronic Granulomatous Disease(CGD) |
| NCT01852370 | PHASE1/PHASE2 | ENROLLING_BY_INVITATION | Sequential Cadaveric Lung and Bone Marrow Transplant for Immune Deficiency Diseases |
| NCT02282904 | PHASE1/PHASE2 | TERMINATED | Haploidentical Transplant for People With Chronic Granulomatous Disease Using Post Transplant Cyclophosphamide |
| NCT03080480 | PHASE1/PHASE2 | TERMINATED | Pioglitazone Therapy for Chronic Granulomatous Disease |
| NCT03513328 | PHASE1/PHASE2 | COMPLETED | Conditioning Regimen for Allogeneic Hematopoietic Stem-Cell Transplantation |
| NCT05104723 | PHASE1/PHASE2 | COMPLETED | Safety and Efficacy of Tofacitinib for Chronic Granulomatous Disease With Inflammatory Complications |
| NCT05463133 | PHASE1/PHASE2 | RECRUITING | Allogeneic Hematopoietic Stem Cell Transplantation for Chronic Granulomatous Disease (CGD) With an Alemtuzumab, Busulfan and TBI-based Conditioning Regimen Combined With Cytokine (IL-6, +/- IFN-gamma) Antagonists |
| NCT06253507 | PHASE1/PHASE2 | ENROLLING_BY_INVITATION | pCCLCHIM-p47 (Lentiviral Vector Transduced CD34 Plus Cells) in Patients With p47 Autosomal Recessive Chronic Granulomatous Disease (AR-CGD) |
| NCT06325709 | PHASE1/PHASE2 | RECRUITING | Base Editing for Mutation Repair in Hematopoietic Stem & Progenitor Cells for X-Linked Chronic Granulomatous Disease |
| NCT06559176 | PHASE1/PHASE2 | ENROLLING_BY_INVITATION | A Study of the Safety and Efficacy of Prime Editing (PM359) in Participants With p47phox Autosomal Recessive Chronic Granulomatous Disease (CGD ) |
| NCT07113743 | PHASE1/PHASE2 | ENROLLING_BY_INVITATION | Part B- G1X-CGD (Lentiviral Vector Transduced CD34+ Cells) in Patients With X-Linked Chronic Granulomatous Disease |
| NCT00394316 | EARLY_PHASE1 | TERMINATED | Gene Therapy for Chronic Granulomatous Disease |
| NCT03910452 | EARLY_PHASE1 | ACTIVE_NOT_RECRUITING | Haploidentical Transplant for People With Chronic Granulomatous Disease (CGD) Using Alemtuzumab, Busulfan and TBI With Post-Transplant Cyclophosphamide |
| NCT03921515 | EARLY_PHASE1 | WITHDRAWN | Skin Immunity Sample Collection Involving Blisters and Biopsies |
Related Atlas pages
- Associated diseases: granulomatous disease, chronic, autosomal recessive, cytochrome b-negative, chronic granulomatous disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autoimmune polyendocrine syndrome type 1, chronic granulomatous disease, granulomatous disease, chronic, autosomal recessive, cytochrome b-negative, granulomatous disease, chronic, X-linked