CYP1B1
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Also known as CP1B
Summary
CYP1B1 (cytochrome P450 family 1 subfamily B member 1, HGNC:2597) is a protein-coding gene on chromosome 2p22.2, encoding Cytochrome P450 1B1 (Q16678). A cytochrome P450 monooxygenase involved in the metabolism of various endogenous substrates, including fatty acids, steroid hormones and vitamins.
This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. The enzyme encoded by this gene localizes to the endoplasmic reticulum and metabolizes procarcinogens such as polycyclic aromatic hydrocarbons and 17beta-estradiol. Mutations in this gene have been associated with primary congenital glaucoma; therefore it is thought that the enzyme also metabolizes a signaling molecule involved in eye development, possibly a steroid.
Source: NCBI Gene 1545 — RefSeq curated summary.
At a glance
- Gene–disease (curated): CYP1B1-related glaucoma with or without anterior segment dysgenesis (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 14
- Clinical variants (ClinVar): 599 total — 56 pathogenic, 53 likely-pathogenic
- Phenotypes (HPO): 48
- Druggable target: yes — 22 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_000104
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2597 |
| Approved symbol | CYP1B1 |
| Name | cytochrome P450 family 1 subfamily B member 1 |
| Location | 2p22.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CP1B |
| Ensembl gene | ENSG00000138061 |
| Ensembl biotype | protein_coding |
| OMIM | 601771 |
| Entrez | 1545 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 10 protein_coding, 3 protein_coding_CDS_not_defined
ENST00000490576, ENST00000491456, ENST00000492443, ENST00000494864, ENST00000610745, ENST00000613082, ENST00000614273, ENST00000714520, ENST00000860003, ENST00000948951, ENST00000948952, ENST00000948953, ENST00000948954
RefSeq mRNA: 1 — MANE Select: NM_000104
NM_000104
CCDS: CCDS1793
Canonical transcript exons
ENST00000610745 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003724268 | 38075780 | 38076151 |
| ENSE00003734480 | 38074346 | 38075389 |
| ENSE00003738364 | 38067509 | 38071310 |
Expression profiles
Bgee: expression breadth ubiquitous, 285 present calls, max score 99.62.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 23.6675 / max 622.1733, expressed in 1279 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 27849 | 21.3859 | 1253 |
| 27848 | 1.4745 | 535 |
| 27847 | 0.4971 | 241 |
| 27845 | 0.1992 | 94 |
| 27846 | 0.1107 | 46 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pericardium | UBERON:0002407 | 99.62 | gold quality |
| cartilage tissue | UBERON:0002418 | 99.30 | gold quality |
| synovial joint | UBERON:0002217 | 99.08 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 98.89 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 98.86 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 98.76 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 98.20 | gold quality |
| superficial temporal artery | UBERON:0001614 | 97.99 | gold quality |
| hair follicle | UBERON:0002073 | 97.88 | gold quality |
| urethra | UBERON:0000057 | 97.71 | gold quality |
| cauda epididymis | UBERON:0004360 | 96.50 | gold quality |
| trachea | UBERON:0003126 | 96.26 | gold quality |
| seminal vesicle | UBERON:0000998 | 96.24 | gold quality |
| penis | UBERON:0000989 | 95.72 | gold quality |
| nipple | UBERON:0002030 | 95.61 | gold quality |
| cardia of stomach | UBERON:0001162 | 95.34 | gold quality |
| heart right ventricle | UBERON:0002080 | 95.15 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 95.06 | gold quality |
| parietal pleura | UBERON:0002400 | 94.96 | gold quality |
| olfactory bulb | UBERON:0002264 | 94.75 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 94.51 | gold quality |
| pleura | UBERON:0000977 | 94.48 | gold quality |
| mammary duct | UBERON:0001765 | 94.16 | gold quality |
| renal medulla | UBERON:0000362 | 94.00 | gold quality |
| tibia | UBERON:0000979 | 93.97 | gold quality |
| monocyte | CL:0000576 | 93.96 | gold quality |
| caput epididymis | UBERON:0004358 | 93.85 | gold quality |
| mononuclear cell | CL:0000842 | 93.79 | gold quality |
| vena cava | UBERON:0004087 | 93.78 | gold quality |
| leukocyte | CL:0000738 | 93.57 | gold quality |
Single-cell (SCXA)
Detected in 13 experiment(s), a significant marker in 12.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-11121 | yes | 1545.15 |
| E-MTAB-8142 | yes | 1318.74 |
| E-MTAB-10283 | yes | 1026.37 |
| E-GEOD-114530 | yes | 956.81 |
| E-GEOD-124472 | yes | 819.39 |
| E-HCAD-10 | yes | 522.26 |
| E-GEOD-135922 | yes | 49.65 |
| E-GEOD-134144 | yes | 38.22 |
| E-HCAD-4 | yes | 22.02 |
| E-CURD-112 | yes | 11.17 |
| E-MTAB-9543 | yes | 7.70 |
| E-MTAB-6108 | no | 929.68 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AHR, AR, ARNT, BRCA1, CREB1, EP300, ESR1, ESR2, KAT2B, NR5A1, PARP1, PAX6, SP1, TBP, TCF3
miRNA regulators (miRDB)
141 targeting CYP1B1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-6772-5P | 99.94 | 67.01 | 577 |
Literature-anchored findings (GeneRIF, showing 40)
- mutations in a patient with Peters’ anomaly (PMID:11403040)
- CYP1B1 mutations for congenital glaucoma (PMID:11558822)
- Investigators examining possible associations between early menarche and mutations in genes of estrogen metabolism found no such association for this gene. (PMID:11749050)
- digenic inheritance of early-onset glaucoma: CYP1B1, a potential modifier gene (PMID:11774072)
- airborne particulates generated during the frying of beef, fish and pork can induce carcinogen-metabolizing CYP1B1 in the human lung-derived cell line (PMID:11955671)
- CYP1B1 polymorphism in prostate neoplasms (PMID:12200121)
- CYP1B1 mRNA is expressed in human liver and the levels are increased in smokers, but the protein is undetectable. (PMID:12520071)
- CYP1B1 gene is a major gene associated with primary congenital glaucoma (GLC3A). (PMID:12525557)
- The phenotypic expression of 3 patients confirm the crucial role of CYP1B1 mutations for congenital glaucoma. (PMID:12567107)
- High-activity CYP1A2 and CYP1B1 alleles, whose gene products metabolize estradiol, were not associated with pubertal stage. (PMID:12692107)
- polymorphism and risk of endometrial cancer (PMID:12770747)
- Single amino acid mutations, but not common polymorphisms, decrease the activity of CYP1B1 against (-)benzo[a]pyrene-7R-trans-7,8-dihydrodiol. (PMID:12807732)
- CYP1B1 is a senescence-associated gene in normal human oral keratinocytes. (PMID:12837283)
- the studied CYP1B1 gene polymorphisms do not influence breast cancer risk overall but may modify the risk after long-term menopausal hormone use. (PMID:12844487)
- Identification of R368H as a predominant CYP1B1 allele causing primary congenital glaucoma in Indian patients. (PMID:14507861)
- Carriers of the CYP1B1 Ser allele had a statistically significant decreased risk of endometrial cancer. (PMID:14656940)
- Four founder mutations were identified in congenital glaucoma patients in two ethnically heterogeneous populations. (PMID:14729846)
- Single Nucleotide Polymorphisms of CYP1B1 is associated with breast cancer (PMID:14734460)
- Mutations in CYPIBI are not a major cause of PCG (primary congenital glaucoma) in this population and that at least one additional locus for this condition is responsible for most cases. (PMID:15255109)
- CYP1B1*3 does not have a role in ovarian cancer development in the Italian Caucasian population (PMID:15255550)
- CYP1B1 is induced in tobacco smoke-induced carcinogenesis in the aerodigestive tract. (PMID:15297370)
- Transcription factors with an affinity for Sp1 sites mediate transcriptional activation of the CYP1B1 gene in biotin-supplemented T cells, increasing the occurrence of single-stranded DNA breaks. (PMID:15333708)
- CYP1B1 mutations might pose a significant risk for early-onset primary open-angle glaucoma and might also modify glaucoma phenotype in patients who do not carry a MYOCILIN mutation (PMID:15342693)
- The number of full-term pregnancies and the CYP1B1-4 polymorphism are significant predictors of timing of natural menopause in Caucasian women. (PMID:15774541)
- cytochrome P450 1B1 (CYP1B1) is inhibited by coumarins, regardles of the CYP1B1 polymorphism (PMID:15861043)
- Methoxylated dietary flavonoids may be potent chemoprotectants by direct inhibition of CYP1B1/1A1 function and/or their protein expression in mouth mucosa and cancer. (PMID:15905203)
- CYP1B1 Leu(432)Val alone and in combination with Phase II enzyme polymorphisms was more strongly associated with increased lung cancer susceptibility among those with at least some household environmental tobacco smoke exposure (PMID:16051642)
- Hypomethylation of the CYP1B1 gene may play an important role in prostate cancer. (PMID:16115918)
- A common polymorphism in the CYP1B1 gene was associated with changes in urinary estrogen levels: both Caucasian and African-American women carrying the variant allele showed higher urinary metabolite ratios than women with the wild-type allele. (PMID:16207128)
- The common N453S coding variant of CYP1B1 is potentially a factor of severity in POAG patients. (PMID:16319821)
- The strong association of specific haplotypes with some predominant CYP1B1 mutations underlying primary congenital glaucoma (PCG) and the observed geographical clustering, may be useful for predictive testing. (PMID:16384942)
- The CYP1B1 mutation spectrum of Kuwaiti PCG (primary congenital glaucoma) patients is similar to that detected in the neighboring countries. (PMID:16490498)
- The frequency of mutations in the FOXC1, GJA1, PITX2, and CYP1B1 genes in this study were 25%, 12.5%, 0% and 0%, respectively. (PMID:16638984)
- On rare occasions CYP1B1 may be primarily responsible for juvenile primary open-angle glaucoma by possible monogenic association. (PMID:16688110)
- This study supports the role of CYP1B1 as a causative gene in Peters anomaly. Furthermore, this emphasizes the broad range of phenotypic expression for CYP1B1 mutations, and its role in eye development. (PMID:16735991)
- Founder effects for most of CYP1B1 mutations. (PMID:16735994)
- The results from this study suggested that CYP1B1 genetic polymorphisms may be associated with the natural onset of menopause. (PMID:16766147)
- Strong evidence against the existence of a substantial overall association between common genetic variation in CYP1B1 and breast cancer risk. (PMID:16847423)
- Heterozygous CYP1B1 mutations could confer increased susceptibility to the development of primary open angle glaucoma in the Spanish population. (PMID:16862072)
- The urinary levels of estradiola nd estrogen metabolites associated with polymorphisms of CYP1A1 AND CYP1B1 in premenopausal/perimenopausal women are reported. (PMID:16949388)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cyp1b1 | ENSDARG00000068934 |
| mus_musculus | Cyp1b1 | ENSMUSG00000024087 |
| rattus_norvegicus | Cyp1b1 | ENSRNOG00000040287 |
Paralogs (2): CYP1A1 (ENSG00000140465), CYP1A2 (ENSG00000140505)
Protein
Protein identifiers
Cytochrome P450 1B1 — Q16678 (reviewed: Q16678)
Alternative names: CYPIB1, Hydroperoxy icosatetraenoate dehydratase
All UniProt accessions (3): Q16678, A0A087WUQ7, A0A087WW26
UniProt curated annotations — full annotation on UniProt →
Function. A cytochrome P450 monooxygenase involved in the metabolism of various endogenous substrates, including fatty acids, steroid hormones and vitamins. Mechanistically, uses molecular oxygen inserting one oxygen atom into a substrate, and reducing the second into a water molecule, with two electrons provided by NADPH via cytochrome P450 reductase (NADPH–hemoprotein reductase). Exhibits catalytic activity for the formation of hydroxyestrogens from estrone (E1) and 17beta-estradiol (E2), namely 2- and 4-hydroxy E1 and E2. Displays a predominant hydroxylase activity toward E2 at the C-4 position. Metabolizes testosterone and progesterone to B or D ring hydroxylated metabolites. May act as a major enzyme for all-trans retinoic acid biosynthesis in extrahepatic tissues. Catalyzes two successive oxidative transformation of all-trans retinol to all-trans retinal and then to the active form all-trans retinoic acid. Catalyzes the epoxidation of double bonds of certain PUFA. Converts arachidonic acid toward epoxyeicosatrienoic acid (EpETrE) regioisomers, 8,9-, 11,12-, and 14,15- EpETrE, that function as lipid mediators in the vascular system. Additionally, displays dehydratase activity toward oxygenated eicosanoids hydroperoxyeicosatetraenoates (HpETEs). This activity is independent of cytochrome P450 reductase, NADPH, and O2. Also involved in the oxidative metabolism of xenobiotics, particularly converting polycyclic aromatic hydrocarbons and heterocyclic aryl amines procarcinogens to DNA-damaging products. Plays an important role in retinal vascular development. Under hyperoxic O2 conditions, promotes retinal angiogenesis and capillary morphogenesis, likely by metabolizing the oxygenated products generated during the oxidative stress. Also, contributes to oxidative homeostasis and ultrastructural organization and function of trabecular meshwork tissue through modulation of POSTN expression.
Subcellular location. Endoplasmic reticulum membrane. Microsome membrane. Mitochondrion.
Tissue specificity. Expressed in heart, brain, lung, skeletal muscle, kidney, spleen, thymus, prostate, testis, ovary, small intestine, colon, and peripheral blood leukocytes. Expressed in retinal endothelial cells and umbilical vein endothelial cells (at protein level).
Disease relevance. Anterior segment dysgenesis 6 (ASGD6) [MIM:617315] A form of anterior segment dysgenesis, a group of defects affecting anterior structures of the eye including cornea, iris, lens, trabecular meshwork, and Schlemm canal. Anterior segment dysgeneses result from abnormal migration or differentiation of the neural crest derived mesenchymal cells that give rise to components of the anterior chamber during eye development. Different anterior segment anomalies may exist alone or in combination, including iris hypoplasia, enlarged or reduced corneal diameter, corneal vascularization and opacity, posterior embryotoxon, corectopia, polycoria, abnormal iridocorneal angle, ectopia lentis, and anterior synechiae between the iris and posterior corneal surface. Clinical conditions falling within the phenotypic spectrum of anterior segment dysgeneses include aniridia, Axenfeld anomaly, Reiger anomaly/syndrome, Peters anomaly, and iridogoniodysgenesis. ASGD6 patients predominantly manifest Peters anomaly. Peters anomaly consists of corneal leukoma, defects in the posterior structures of the cornea such as absence of the posterior corneal stroma and Descemet membrane, and a variable degree of iridocorneal and/or keratolenticular adhesions. Over 50% of patients develop glaucoma in childhood. The disease is caused by variants affecting the gene represented in this entry. Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] An autosomal recessive form of primary congenital glaucoma (PCG). PCG is characterized by marked increase of intraocular pressure at birth or early childhood, large ocular globes (buphthalmos) and corneal edema. It results from developmental defects of the trabecular meshwork and anterior chamber angle of the eye that prevent adequate drainage of aqueous humor. The disease is caused by variants affecting distinct genetic loci, including the gene represented in this entry. Glaucoma 1, open angle, A (GLC1A) [MIM:137750] A form of primary open angle glaucoma (POAG). POAG is characterized by a specific pattern of optic nerve and visual field defects. The angle of the anterior chamber of the eye is open, and usually the intraocular pressure is increased. However, glaucoma can occur at any intraocular pressure. The disease is generally asymptomatic until the late stages, by which time significant and irreversible optic nerve damage has already taken place. The gene represented in this entry acts as a disease modifier. Digenic mutations in CYP1B1 and MYOC have been found in a family segregating both primary adult-onset and juvenile forms of open angle glaucoma. All affected family members with mutations in both MYOC and CYP1B1 had juvenile glaucoma, whereas those with only the MYOC mutation had the adult-onset form.
Activity regulation. Enzyme activity is increased by liposomes containing anionic phospholipids, phosphatidic acid and cardiolipin. Inhibited by naringenin with an IC(50) of 5 uM. Enzyme activity is increased by cytochrome b5.
Induction. By polycyclic aromatic hydrocarbons (PAH) and 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD).
Pathway. Steroid hormone biosynthesis. Cofactor metabolism; retinol metabolism. Lipid metabolism; arachidonate metabolism.
Polymorphism. Various CYP1B1 alleles are known. The sequence shown is that of allele CYP1B1*1.
Similarity. Belongs to the cytochrome P450 family.
RefSeq proteins (1): NP_000095* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001128 | Cyt_P450 | Family |
| IPR002401 | Cyt_P450_E_grp-I | Family |
| IPR017972 | Cyt_P450_CS | Conserved_site |
| IPR036396 | Cyt_P450_sf | Homologous_superfamily |
Pfam: PF00067
Catalyzed reactions (Rhea), 12 shown:
- an organic molecule + reduced [NADPH–hemoprotein reductase] + O2 = an alcohol + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:17149)
- (12S)-hydroperoxy-(5Z,8Z,10E,14Z)-eicosatetraenoate = 12-oxo-(5Z,8Z,10E,14Z)-eicosatetraenoate + H2O (RHEA:37947)
- all-trans-retinal + reduced [NADPH–hemoprotein reductase] + O2 = all-trans-retinoate + oxidized [NADPH–hemoprotein reductase] + H2O + 2 H(+) (RHEA:42088)
- all-trans-retinol + reduced [NADPH–hemoprotein reductase] + O2 = all-trans-retinal + oxidized [NADPH–hemoprotein reductase] + 2 H2O + H(+) (RHEA:42092)
- testosterone + reduced [NADPH–hemoprotein reductase] + O2 = 6beta,17beta-dihydroxyandrost-4-en-3-one + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:46296)
- estrone + reduced [NADPH–hemoprotein reductase] + O2 = 2-hydroxyestrone + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:47208)
- 17beta-estradiol + reduced [NADPH–hemoprotein reductase] + O2 = 2-hydroxy-17beta-estradiol + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:47212)
- progesterone + reduced [NADPH–hemoprotein reductase] + O2 = 6beta-hydroxyprogesterone + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:47252)
- progesterone + reduced [NADPH–hemoprotein reductase] + O2 = 16alpha-hydroxyprogesterone + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:47260)
- 17beta-estradiol + reduced [NADPH–hemoprotein reductase] + O2 = 4-hydroxy-17beta-estradiol + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:47280)
- estrone + reduced [NADPH–hemoprotein reductase] + O2 = 4-hydroxyestrone + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:47292)
- (5S)-hydroperoxy-(6E,8Z,11Z,14Z)-eicosatetraenoate = 5-oxo-(6E,8Z,11Z,14Z)-eicosatetraenoate + H2O (RHEA:48632)
UniProt features (102 total): sequence variant 63, helix 22, strand 10, turn 3, chain 1, binding site 1, site 1, mutagenesis site 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3PM0 | X-RAY DIFFRACTION | 2.7 |
| 6IQ5 | X-RAY DIFFRACTION | 3.7 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q16678-F1 | 92.29 | 0.81 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 395 (major determinant of cyp1b1 17beta-estradiol hydroxylation regiospecificity)
Ligand- & substrate-binding residues (1): 470 (axial binding residue)
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 395 | invertes the 4oh e2:2oh e2 hydroxylation preference from 5.1 to 0.45. |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-211976 | Endogenous sterols |
| R-HSA-2142670 | Synthesis of epoxy (EET) and dihydroxyeicosatrienoic acids (DHET) |
| R-HSA-2142816 | Synthesis of (16-20)-hydroxyeicosatetraenoic acids (HETE) |
| R-HSA-5579000 | Defective CYP1B1 causes Glaucoma |
MSigDB gene sets: 575 (showing top):
MODULE_93, KOBAYASHI_EGFR_SIGNALING_24HR_UP, REACTOME_BIOLOGICAL_OXIDATIONS, GOBP_COLLAGEN_FIBRIL_ORGANIZATION, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_PAIRED_DONORS_WITH_INCORPORATION_OR_REDUCTION_OF_MOLECULAR_OXYGEN, PAL_PRMT5_TARGETS_UP, MODULE_45, GOZGIT_ESR1_TARGETS_DN, CHUANG_OXIDATIVE_STRESS_RESPONSE_UP, GOBP_POSITIVE_REGULATION_OF_VASCULATURE_DEVELOPMENT, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, DACOSTA_UV_RESPONSE_VIA_ERCC3_UP, GOBP_REGULATION_OF_HORMONE_LEVELS, REACTOME_ENDOGENOUS_STEROLS
GO Biological Process (41): angiogenesis (GO:0001525), trabecular meshwork development (GO:0002930), steroid catabolic process (GO:0006706), xenobiotic metabolic process (GO:0006805), nitric oxide biosynthetic process (GO:0006809), cell adhesion (GO:0007155), steroid metabolic process (GO:0008202), estrogen metabolic process (GO:0008210), negative regulation of cell population proliferation (GO:0008285), intrinsic apoptotic signaling pathway in response to oxidative stress (GO:0008631), toxin metabolic process (GO:0009404), response to toxic substance (GO:0009636), positive regulation of vascular endothelial growth factor production (GO:0010575), sterol metabolic process (GO:0016125), arachidonate metabolic process (GO:0019369), epoxygenase P450 pathway (GO:0019373), collagen fibril organization (GO:0030199), negative regulation of cell migration (GO:0030336), obsolete negative regulation of NF-kappaB transcription factor activity (GO:0032088), negative regulation of cell adhesion mediated by integrin (GO:0033629), xenobiotic catabolic process (GO:0042178), benzene-containing compound metabolic process (GO:0042537), retinol metabolic process (GO:0042572), retinal metabolic process (GO:0042574), positive regulation of apoptotic process (GO:0043065), blood vessel endothelial cell migration (GO:0043534), endothelial cell migration (GO:0043542), positive regulation of angiogenesis (GO:0045766), positive regulation of receptor signaling pathway via JAK-STAT (GO:0046427), obsolete membrane lipid catabolic process (GO:0046466), blood vessel morphogenesis (GO:0048514), retinal blood vessel morphogenesis (GO:0061304), cellular response to hydrogen peroxide (GO:0070301), endothelial cell-cell adhesion (GO:0071603), omega-hydroxylase P450 pathway (GO:0097267), regulation of reactive oxygen species metabolic process (GO:2000377), lipid metabolic process (GO:0006629), fatty acid metabolic process (GO:0006631), hormone metabolic process (GO:0042445), retina vasculature development in camera-type eye (GO:0061298)
GO Molecular Function (15): monooxygenase activity (GO:0004497), iron ion binding (GO:0005506), steroid hydroxylase activity (GO:0008395), oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen (GO:0016709), oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen (GO:0016712), heme binding (GO:0020037), testosterone 6-beta-hydroxylase activity (GO:0050649), estrogen 16-alpha-hydroxylase activity (GO:0101020), estrogen 2-hydroxylase activity (GO:0101021), hydroperoxy icosatetraenoate dehydratase activity (GO:0106256), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), lyase activity (GO:0016829), metal ion binding (GO:0046872)
GO Cellular Component (4): mitochondrion (GO:0005739), endoplasmic reticulum membrane (GO:0005789), endoplasmic reticulum (GO:0005783), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Arachidonate metabolism | 2 |
| Cytochrome P450 - arranged by substrate type | 1 |
| Metabolic disorders of biological oxidation enzymes | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| steroid metabolic process | 3 |
| monooxygenase activity | 3 |
| steroid hydroxylase activity | 3 |
| oxidoreductase activity | 2 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen | 2 |
| catalytic activity | 2 |
| cytoplasm | 2 |
| intracellular membrane-bounded organelle | 2 |
| blood vessel morphogenesis | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| tissue development | 1 |
| camera-type eye development | 1 |
| lipid catabolic process | 1 |
| metabolic process | 1 |
| cellular response to xenobiotic stimulus | 1 |
| biosynthetic process | 1 |
| nitric oxide metabolic process | 1 |
| cellular process | 1 |
| lipid metabolic process | 1 |
| hormone metabolic process | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| intrinsic apoptotic signaling pathway | 1 |
| secondary metabolic process | 1 |
| response to chemical | 1 |
| positive regulation of cytokine production | 1 |
| vascular endothelial growth factor production | 1 |
| regulation of vascular endothelial growth factor production | 1 |
| long-chain fatty acid metabolic process | 1 |
| icosanoid metabolic process | 1 |
| unsaturated fatty acid metabolic process | 1 |
| olefinic compound metabolic process | 1 |
| arachidonate metabolic process | 1 |
| extracellular matrix organization | 1 |
| cell migration | 1 |
| regulation of cell migration | 1 |
| negative regulation of cell motility | 1 |
| negative regulation of cell adhesion | 1 |
Protein interactions and networks
STRING
2850 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CYP1B1 | MYOC | Q99972 | 944 |
| CYP1B1 | PPIG | Q13427 | 910 |
| CYP1B1 | FOXC1 | Q12948 | 849 |
| CYP1B1 | PITX2 | Q99697 | 832 |
| CYP1B1 | WDR36 | Q8NI36 | 813 |
| CYP1B1 | NQO1 | P15559 | 794 |
| CYP1B1 | LTBP2 | Q14767 | 788 |
| CYP1B1 | SULT1A1 | P50225 | 747 |
| CYP1B1 | AHRR | A9YTQ3 | 746 |
| CYP1B1 | GSTP1 | P09211 | 722 |
| CYP1B1 | COMT | P21964 | 720 |
| CYP1B1 | FOXQ1 | Q9C009 | 713 |
| CYP1B1 | ARNT | P27540 | 706 |
| CYP1B1 | ASB10 | Q8WXI3 | 704 |
| CYP1B1 | OPTN | Q96CV9 | 698 |
IntAct
13 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CYP1B1 | PGRMC1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CYP1B1 | TEK | psi-mi:“MI:0915”(physical association) | 0.400 |
| HSPB2 | CYP1B1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM223 | psi-mi:“MI:0914”(association) | 0.350 | |
| SAE1 | CYP1B1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| fieF | CYP1B1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (20): CYP1B1 (Two-hybrid), CYP1B1 (Affinity Capture-MS), CYP1B1 (Affinity Capture-MS), CYP1B1 (Co-localization), CYP1B1 (Co-localization), CYP1B1 (Co-localization), CYP1B1 (Co-localization), PGRMC1 (Affinity Capture-MS), CYP1B1 (Affinity Capture-MS), CYP1B1 (Proximity Label-MS), CYP1B1 (Proximity Label-MS), CYP1B1 (Proximity Label-MS), CYP1B1 (Proximity Label-MS), CYP1B1 (Affinity Capture-MS), CYP1B1 (Affinity Capture-RNA)
ESM2 similar proteins: B2RXA7, E1BHJ4, F1RE08, G3V7X8, I1GQE7, O02766, O15528, O35084, O35132, O43174, O55127, O88962, O93323, P00191, P03940, P08686, P0DOX0, P12394, P15540, P30437, P51871, P70085, P98187, Q07973, Q08D50, Q09128, Q16678, Q2LA59, Q2LA60, Q2LCM1, Q3MID2, Q4G0S4, Q5VRM7, Q60991, Q64429, Q64441, Q64562, Q64678, Q6EIG3, Q6V0L0
Diamond homologs: O18809, O35293, O42231, O42430, O42457, O54749, O54750, O55071, O57525, O73853, O77809, O77810, O93297, P00176, P00178, P00179, P00182, P00184, P00185, P00186, P00187, P04167, P04798, P04799, P05176, P05177, P05180, P08683, P10610, P10634, P11371, P11711, P11712, P11715, P12394, P12789, P12790, P12938, P13107, P15123
SIGNOR signaling
6 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| AHR | “up-regulates quantity by expression” | CYP1B1 | “transcriptional regulation” |
| ARNT | “up-regulates quantity by expression” | CYP1B1 | “transcriptional regulation” |
| SP1 | “up-regulates quantity by expression” | CYP1B1 | “transcriptional regulation” |
| CYP1B1 | “up-regulates quantity” | 4-hydroxy-17beta-estradiol | “chemical modification” |
| CYP1B1 | “up-regulates quantity” | 17beta-estradiol | “chemical modification” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
599 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 56 |
| Likely pathogenic | 53 |
| Uncertain significance | 208 |
| Likely benign | 214 |
| Benign | 23 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1120045 | NM_000104.4(CYP1B1):c.434_443del (p.Arg145fs) | Pathogenic |
| 1254629 | NM_000104.4(CYP1B1):c.1310C>T (p.Pro437Leu) | Pathogenic |
| 1322184 | NM_000104.4(CYP1B1):c.517G>T (p.Glu173Ter) | Pathogenic |
| 1335387 | NM_000104.4(CYP1B1):c.797GCAACTTCA[1] (p.Ser269_Phe271del) | Pathogenic |
| 1339135 | NM_000104.4(CYP1B1):c.1044-2A>G | Pathogenic |
| 1339668 | NM_000104.4(CYP1B1):c.1090G>A (p.Val364Met) | Pathogenic |
| 1339669 | NM_000104.4(CYP1B1):c.970_971dup (p.Thr325fs) | Pathogenic |
| 1412564 | NM_000104.4(CYP1B1):c.1063C>T (p.Arg355Ter) | Pathogenic |
| 1442930 | NM_000104.4(CYP1B1):c.55C>T (p.Gln19Ter) | Pathogenic |
| 2098650 | NM_000104.4(CYP1B1):c.350G>T (p.Arg117Leu) | Pathogenic |
| 2203048 | NM_000104.4(CYP1B1):c.1168C>A (p.Arg390Ser) | Pathogenic |
| 2203049 | NM_000104.4(CYP1B1):c.988_989delinsTT (p.Ala330Phe) | Pathogenic |
| 2203050 | NM_000104.4(CYP1B1):c.217_218del (p.Ser73fs) | Pathogenic |
| 2577219 | NM_000104.4(CYP1B1):c.317C>A (p.Ala106Asp) | Pathogenic |
| 2681137 | NM_000104.4(CYP1B1):c.868del (p.Arg290fs) | Pathogenic |
| 2681139 | NM_000104.4(CYP1B1):c.1023G>A (p.Trp341Ter) | Pathogenic |
| 2687741 | NM_000104.4(CYP1B1):c.9del (p.Ser4fs) | Pathogenic |
| 2705933 | NM_000104.4(CYP1B1):c.2T>G (p.Met1Arg) | Pathogenic |
| 2710978 | NM_000104.4(CYP1B1):c.873_877dup (p.Met293delinsThrTer) | Pathogenic |
| 2720250 | NM_000104.4(CYP1B1):c.1425_1428del (p.Ser476fs) | Pathogenic |
| 2734165 | NM_000104.4(CYP1B1):c.243C>G (p.Tyr81Ter) | Pathogenic |
| 2764029 | NM_000104.4(CYP1B1):c.836_863del (p.His279fs) | Pathogenic |
| 2768652 | NM_000104.4(CYP1B1):c.243del (p.Arg80_Tyr81insTer) | Pathogenic |
| 282564 | NM_000104.4(CYP1B1):c.1064_1076del (p.Arg355fs) | Pathogenic |
| 2827579 | NM_000104.4(CYP1B1):c.982_990del (p.Phe328_Ala330del) | Pathogenic |
| 2843498 | NM_000104.4(CYP1B1):c.1400_1411del (p.Lys467_Cys470del) | Pathogenic |
| 2849349 | NM_000104.4(CYP1B1):c.1057C>T (p.Gln353Ter) | Pathogenic |
| 3236111 | NM_000104.4(CYP1B1):c.83C>A (p.Ser28Ter) | Pathogenic |
| 335952 | NM_000104.4(CYP1B1):c.1168C>T (p.Arg390Cys) | Pathogenic |
| 3389610 | NM_000104.4(CYP1B1):c.896_897del (p.Ser299fs) | Pathogenic |
SpliceAI
343 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:38071325:A:AC | acceptor_gain | 1.0000 |
| 2:38071308:TACC:T | acceptor_loss | 0.9900 |
| 2:38071310:CCTG:C | acceptor_loss | 0.9900 |
| 2:38071311:C:CA | acceptor_loss | 0.9900 |
| 2:38071318:G:C | acceptor_gain | 0.9900 |
| 2:38071318:G:GC | acceptor_gain | 0.9900 |
| 2:38071322:T:C | acceptor_gain | 0.9900 |
| 2:38071322:T:TC | acceptor_gain | 0.9900 |
| 2:38071325:A:C | acceptor_gain | 0.9900 |
| 2:38071327:G:C | acceptor_gain | 0.9900 |
| 2:38071327:G:GC | acceptor_gain | 0.9900 |
| 2:38074340:CTTTA:C | donor_loss | 0.9900 |
| 2:38074341:TTTA:T | donor_loss | 0.9900 |
| 2:38074342:TTA:T | donor_loss | 0.9900 |
| 2:38074343:TACCT:T | donor_loss | 0.9900 |
| 2:38074344:A:T | donor_loss | 0.9900 |
| 2:38074345:C:CT | donor_loss | 0.9900 |
| 2:38075385:CCATG:C | acceptor_gain | 0.9900 |
| 2:38075386:CATGC:C | acceptor_gain | 0.9900 |
| 2:38075388:TG:T | acceptor_gain | 0.9900 |
| 2:38071308:TAC:T | acceptor_gain | 0.9800 |
| 2:38071320:G:C | acceptor_gain | 0.9800 |
| 2:38071320:G:GC | acceptor_gain | 0.9800 |
| 2:38071321:T:TC | acceptor_gain | 0.9800 |
| 2:38075390:C:CC | acceptor_gain | 0.9800 |
| 2:38071321:T:C | acceptor_gain | 0.9700 |
| 2:38075386:CATG:C | acceptor_gain | 0.9700 |
| 2:38071309:AC:A | acceptor_gain | 0.9600 |
| 2:38071310:CC:C | acceptor_gain | 0.9600 |
| 2:38071311:C:CC | acceptor_gain | 0.9600 |
AlphaMissense
3576 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:38071019:G:C | F445L | 0.995 |
| 2:38071019:G:T | F445L | 0.995 |
| 2:38071021:A:G | F445L | 0.995 |
| 2:38070965:A:C | F463L | 0.994 |
| 2:38070965:A:T | F463L | 0.994 |
| 2:38070967:A:G | F463L | 0.994 |
| 2:38071085:G:C | N423K | 0.994 |
| 2:38071085:G:T | N423K | 0.994 |
| 2:38071095:A:T | V420D | 0.994 |
| 2:38071175:G:C | S393R | 0.993 |
| 2:38071175:G:T | S393R | 0.993 |
| 2:38071177:T:G | S393R | 0.993 |
| 2:38071194:T:A | E387V | 0.993 |
| 2:38074396:G:C | S331R | 0.993 |
| 2:38074396:G:T | S331R | 0.993 |
| 2:38074398:T:G | S331R | 0.993 |
| 2:38071153:G:C | H401D | 0.991 |
| 2:38071186:G:T | R390S | 0.991 |
| 2:38074987:G:C | F134L | 0.991 |
| 2:38074987:G:T | F134L | 0.991 |
| 2:38074989:A:G | F134L | 0.991 |
| 2:38074368:A:G | W341R | 0.990 |
| 2:38074368:A:T | W341R | 0.990 |
| 2:38074665:C:G | D242H | 0.990 |
| 2:38074764:A:G | C209R | 0.989 |
| 2:38071089:A:T | V422D | 0.988 |
| 2:38070950:C:A | R468S | 0.987 |
| 2:38070950:C:G | R468S | 0.987 |
| 2:38071020:A:G | F445S | 0.987 |
| 2:38071054:A:G | W434R | 0.987 |
dbSNP variants (sampled 300 via entrez): RS1000265348 (2:38070419 T>C), RS1000395365 (2:38075183 G>A,T), RS1000604188 (2:38068913 C>A,T), RS1000852529 (2:38075340 A>G), RS1000878158 (2:38067642 G>A), RS1001132290 (2:38074095 G>A), RS10012 (2:38075247 G>A,C,T), RS1001337556 (2:38069332 G>A), RS1001561744 (2:38074975 C>G,T), RS1001788696 (2:38069716 C>T), RS1001839676 (2:38073549 G>T), RS1001874715 (2:38078056 G>C), RS1001893622 (2:38073699 C>A,T), RS1002021767 (2:38077314 G>T), RS1002328553 (2:38077799 G>A,T)
Disease associations
OMIM: gene MIM:601771 | disease phenotypes: MIM:231300, MIM:617315, MIM:600975, MIM:604229, MIM:107250, MIM:611544, MIM:615959, MIM:137760
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| CYP1B1-related glaucoma with or without anterior segment dysgenesis | Definitive | Autosomal recessive |
| glaucoma 3A | Definitive | Autosomal recessive |
| Peters anomaly | Supportive | Autosomal dominant |
| congenital glaucoma | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| CYP1B1-related glaucoma with or without anterior segment dysgenesis | Definitive | AR |
Mondo (13): congenital glaucoma (MONDO:0020366), glaucoma 3A (MONDO:0009277), anterior segment dysgenesis 6 (MONDO:0015016), CYP1B1-related glaucoma with or without anterior segment dysgenesis (MONDO:0800472), primary congenital glaucoma (MONDO:0000365), glaucoma 3, primary infantile, B (MONDO:0010968), Peters anomaly (MONDO:0011414), anterior segment dysgenesis (MONDO:0019503), coloboma (MONDO:0001476), cataract 17 multiple types (MONDO:0012688), juvenile open angle glaucoma (MONDO:0020367), myopathy, centronuclear, 5 (MONDO:0014418), OPTN-related open angle glaucoma (MONDO:0100553)
Orphanet (7): Congenital glaucoma (Orphanet:98976), Juvenile glaucoma (Orphanet:98977), Peters anomaly (Orphanet:708), Anterior segment developmental anomaly (Orphanet:88632), OBSOLETE: Ocular coloboma (Orphanet:194), Early onset non-syndromic cataract (Orphanet:91492), Autosomal recessive centronuclear myopathy (Orphanet:169186)
HPO phenotypes
48 total (30 of 48 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000485 | Megalocornea |
| HP:0000486 | Strabismus |
| HP:0000501 | Glaucoma |
| HP:0000505 | Visual impairment |
| HP:0000523 | Subcapsular cataract |
| HP:0000525 | Abnormality iris morphology |
| HP:0000545 | Myopia |
| HP:0000557 | Buphthalmos |
| HP:0000572 | Visual loss |
| HP:0000587 | Abnormal optic nerve morphology |
| HP:0000593 | Abnormal anterior chamber morphology |
| HP:0000603 | Central scotoma |
| HP:0000613 | Photophobia |
| HP:0000639 | Nystagmus |
| HP:0000643 | Blepharospasm |
| HP:0000646 | Amblyopia |
| HP:0000659 | Peters anomaly |
| HP:0001087 | Developmental glaucoma |
| HP:0001089 | Iris atrophy |
| HP:0001138 | Optic neuropathy |
| HP:0003593 | Infantile onset |
| HP:0007663 | Reduced visual acuity |
| HP:0007759 | Opacification of the corneal stroma |
| HP:0007765 | Deep anterior chamber |
| HP:0007854 | Glaucomatous visual field defect |
| HP:0007906 | Ocular hypertension |
| HP:0007957 | Corneal opacity |
| HP:0007994 | Peripheral visual field loss |
| HP:0008007 | Primary congenital glaucoma |
GWAS associations
14 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003059_4 | Parkinson’s disease | 1.000000e-06 |
| GCST003061_1 | Cutaneous malignant melanoma | 7.000000e-09 |
| GCST004142_24 | Melanoma | 7.000000e-09 |
| GCST007504_2 | Nevus count | 6.000000e-07 |
| GCST007505_21 | Nevus count or cutaneous melanoma | 1.000000e-10 |
| GCST007713_1 | Frontal fibrosing alopecia | 2.000000e-11 |
| GCST008870_48 | Keratinocyte cancer (MTAG) | 5.000000e-12 |
| GCST008871_37 | Basal cell carcinoma | 3.000000e-13 |
| GCST009238_1 | Asthma (time to childhood onset) x early life tobacco smoke interaction | 4.000000e-06 |
| GCST009391_1309 | Metabolite levels | 8.000000e-06 |
| GCST010303_10 | Nevus count or cutaneous melanoma | 2.000000e-24 |
| GCST010304_38 | Cutaneous malignant melanoma | 7.000000e-15 |
| GCST90000654_6 | Central corneal thickness | 1.000000e-08 |
| GCST90013410_7 | Basal cell carcinoma | 4.000000e-12 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004632 | nevus count |
| EFO:0009855 | frontal fibrosing alopecia |
| EFO:0010176 | keratinocyte carcinoma |
| EFO:0004847 | age at onset |
| EFO:0008361 | environmental tobacco smoke exposure measurement |
| EFO:0010517 | oxalate measurement |
| EFO:0005213 | central corneal thickness |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D003103 | Coloboma | C11.250.110; C11.270.147; C16.131.384.282 |
| D006871 | Hydrophthalmos | C11.250.480; C11.525.381.407.480; C16.131.384.480; C16.614.438 |
| C566923 | Cataract, Congenital Nuclear, Autosomal Recessive 3 (supp.) | |
| C536824 | Glaucoma 3, primary infantile, B (supp.) | |
| C537884 | Peters anomaly (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (4): CHEMBL4523986 (PROTEIN FAMILY), CHEMBL4878 (SINGLE PROTEIN), CHEMBL6066041 (PROTEIN-PROTEIN INTERACTION), CHEMBL6066132 (PROTEIN-PROTEIN INTERACTION)
Molecules with ChEMBL bioactivity
22 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 758,169 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL477772 | PAZOPANIB | 4 | 15,540 |
| CHEMBL1095777 | INDACATEROL | 4 | 2,735 |
| CHEMBL135 | ESTRADIOL | 4 | 123,080 |
| CHEMBL190461 | CANNABIDIOL | 4 | 26,379 |
| CHEMBL295124 | BERBERINE | 4 | 26,682 |
| CHEMBL45 | MELATONIN | 4 | 56,417 |
| CHEMBL532 | ERYTHROMYCIN | 4 | 141,173 |
| CHEMBL723 | CARVEDILOL | 4 | 30,225 |
| CHEMBL165 | RESVERATROL | 3 | 60,144 |
| CHEMBL24171 | BERGAPTEN | 3 | 3,967 |
| CHEMBL50 | QUERCETIN | 3 | 74,559 |
| CHEMBL74415 | CANNABINOL | 3 | 18,794 |
| CHEMBL151 | LUTEOLIN | 2 | 23,523 |
| CHEMBL242341 | FORMONONETIN | 2 | 8,420 |
| CHEMBL275638 | FLAVONE | 2 | 88,985 |
| CHEMBL299613 | 2-METHOXYESTRADIOL | 2 | 13,643 |
| CHEMBL399910 | PINOCEMBRIN | 2 | 163 |
| CHEMBL44746 | KHELLIN | 2 | 30,610 |
| CHEMBL8260 | BAICALEIN | 2 | 8,592 |
| CHEMBL83527 | PTEROSTILBENE | 2 | 4,538 |
| CHEMBL150 | KAEMPFEROL | 1 | |
| CHEMBL295316 | PLUMBAGIN | 1 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
5 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs10012 | Efficacy | 3 | risperidone | Schizophrenia |
| rs1056827 | Efficacy | 3 | risperidone | Schizophrenia |
| rs1056836 | Efficacy | 3 | cyclophosphamide;epirubicin;fluorouracil | Breast Neoplasms |
| rs1056836 | Toxicity | 3 | cyclophosphamide;epirubicin;paclitaxel | Breast Neoplasms |
| rs1056836 | Toxicity | 3 | cyclophosphamide;doxorubicin;fluorouracil | Breast Neoplasms |
PharmGKB variants
6 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs10012 | CYP1B1 | 3 | 0.00 | 1 | risperidone |
| rs1056827 | CYP1B1 | 3 | 0.00 | 1 | risperidone |
| rs1056836 | CYP1B1 | 3 | 2.50 | 3 | cyclophosphamide;doxorubicin;fluorouracil;cyclophosphamide;epirubicin;paclitaxel;cyclophosphamide;epirubicin;fluorouracil |
| rs1800440 | CYP1B1 | 0.00 | 0 | ||
| rs162561 | CYP1B1 | 0.00 | 0 | ||
| rs1056837 | CYP1B1 | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — CYP1 family
Most potent curated ligand interactions (10 total), top 10:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| 2,3’,4,5’-Tetramethoxystilbene | Inhibition | 8.22 | pIC50 |
| acacetin | Inhibition | 8.15 | pKi |
| diosmetin | Inhibition | 7.8 | pKi |
| chrysin | Inhibition | 7.8 | pKi |
| quercetin | Inhibition | 7.64 | pKi |
| 5H3’FPE | Inhibition | 7.62 | pIC50 |
| myricetin | Inhibition | 7.57 | pKi |
| eupatorin | Inhibition | 7.46 | pKi |
| berberine | Inhibition | 7.36 | pKi |
| apigenin | Inhibition | 7.19 | pKi |
Binding affinities (BindingDB)
2 measured of 6 human assays (7 total across all organisms); most potent 2 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| (E)-5-(2-phenylethenyl)-1,3-benzenediol | KI | 74.3 nM |
| Stilbene, 8f | KI | 323 nM |
ChEMBL bioactivities
803 potent at pChembl≥5 of 834 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.70 | IC50 | 0.02 | nM | CHEMBL5560596 |
| 10.70 | IC50 | 0.02 | nM | CHEMBL5557701 |
| 10.70 | IC50 | 0.02 | nM | CHEMBL6191896 |
| 10.66 | Ki | 0.02171 | nM | CHEMBL5575235 |
| 10.40 | IC50 | 0.04 | nM | CHEMBL5575235 |
| 10.37 | IC50 | 0.043 | nM | CHEMBL3421639 |
| 10.30 | IC50 | 0.05 | nM | CHEMBL6192715 |
| 10.15 | IC50 | 0.07 | nM | CHEMBL4749123 |
| 10.05 | IC50 | 0.09 | nM | CHEMBL5279681 |
| 9.85 | IC50 | 0.14 | nM | CHEMBL4798651 |
| 9.82 | IC50 | 0.15 | nM | CHEMBL5561280 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL3422338 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL3422258 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL3422257 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL5394220 |
| 9.68 | IC50 | 0.21 | nM | CHEMBL5570915 |
| 9.62 | IC50 | 0.24 | nM | CHEMBL5561334 |
| 9.59 | IC50 | 0.26 | nM | CHEMBL6189379 |
| 9.54 | IC50 | 0.29 | nM | CHEMBL6190390 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL3422349 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL3422337 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL3422335 |
| 9.52 | IC50 | 0.3 | nM | CHEMBL4759410 |
| 9.51 | IC50 | 0.31 | nM | CHEMBL5403545 |
| 9.42 | IC50 | 0.38 | nM | CHEMBL4799247 |
| 9.41 | IC50 | 0.39 | nM | CHEMBL5568815 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL4748722 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL6188717 |
| 9.34 | IC50 | 0.46 | nM | CHEMBL4782753 |
| 9.33 | IC50 | 0.47 | nM | CHEMBL5575235 |
| 9.33 | IC50 | 0.47 | nM | CHEMBL6191657 |
| 9.33 | IC50 | 0.47 | nM | CHEMBL6191055 |
| 9.31 | IC50 | 0.49 | nM | CHEMBL368236 |
| 9.31 | IC50 | 0.49 | nM | CHEMBL5555246 |
| 9.31 | IC50 | 0.49 | nM | CHEMBL6188712 |
| 9.28 | IC50 | 0.52 | nM | CHEMBL4064195 |
| 9.28 | IC50 | 0.53 | nM | CHEMBL6190011 |
| 9.26 | IC50 | 0.551 | nM | CHEMBL5287897 |
| 9.24 | IC50 | 0.57 | nM | ALPHA-NAPHTHOFLAVONE |
| 9.22 | IC50 | 0.6 | nM | CHEMBL3422338 |
| 9.22 | IC50 | 0.6 | nM | CHEMBL4755282 |
| 9.17 | IC50 | 0.67 | nM | CHEMBL5422312 |
| 9.10 | IC50 | 0.8 | nM | CHEMBL3422350 |
| 9.08 | IC50 | 0.84 | nM | CHEMBL4798694 |
| 9.08 | IC50 | 0.83 | nM | CHEMBL6188570 |
| 9.06 | IC50 | 0.87 | nM | CHEMBL4747913 |
| 9.06 | IC50 | 0.88 | nM | CHEMBL6191455 |
| 9.05 | IC50 | 0.9 | nM | CHEMBL6189629 |
| 9.03 | IC50 | 0.93 | nM | CHEMBL4799346 |
| 9.03 | IC50 | 0.93 | nM | CHEMBL6190275 |
PubChem BioAssay actives
703 with measured affinity, of 1947 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-(3-fluorophenyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assay | ic50 | <0.0001 | uM |
| 5-[(E)-2-(4-methoxyphenyl)ethenyl]-4,6-bis(3-methylbut-2-enyl)benzene-1,3-diol | 2022034: Inhibition of recombinant human CYP1B1 using 7-ethyl-0-resorufin as substrate incubated for 30 mins in presence of NADPH | ic50 | <0.0001 | uM |
| N-ethyl-2-(4-iodophenyl)quinazolin-4-amine;hydrochloride | 2082559: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate preincubated with enzyme for 5 mins followed by fluorescent substrate and NADPH addition and measured after 35 mins by EROD assay | ic50 | <0.0001 | uM |
| 6-bromo-2-(pyrimidin-5-ylmethyl)benzo[de]isoquinoline-1,3-dione | 2108194: Inhibition of recombinant human CYP1B1 using 7-ER as substrate in presence of NADPH by fluorescence based assay | ic50 | <0.0001 | uM |
| 2-(4-iodophenyl)quinazolin-4-amine;hydrochloride | 2082559: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate preincubated with enzyme for 5 mins followed by fluorescent substrate and NADPH addition and measured after 35 mins by EROD assay | ic50 | <0.0001 | uM |
| 2-(4-iodophenyl)quinazolin-4-amine | 2082559: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate preincubated with enzyme for 5 mins followed by fluorescent substrate and NADPH addition and measured after 35 mins by EROD assay | ic50 | <0.0001 | uM |
| 2-(5-fluoro-2-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0001 | uM |
| 2-(5-chloro-2-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0001 | uM |
| N-(4-imidazol-1-ylphenyl)-4-(1,3-thiazol-2-yl)-1,3-thiazol-2-amine | 1936828: Inhibition of recombinant human CYP1B1 using 7-ethyl-0-resorufin as substrate incubated for 30 mins in presence of NADPH by EROD assay | ic50 | 0.0001 | uM |
| N-(2-fluoroethyl)-2-(4-iodophenyl)quinazolin-4-amine;hydrochloride | 2082559: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate preincubated with enzyme for 5 mins followed by fluorescent substrate and NADPH addition and measured after 35 mins by EROD assay | ic50 | 0.0001 | uM |
| 6,7,10-trimethoxy-2-phenylbenzo[h]chromen-4-one | 1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assay | ic50 | 0.0002 | uM |
| 2-(2-fluorophenyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assay | ic50 | 0.0002 | uM |
| 2-(4-chlorophenyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assay | ic50 | 0.0002 | uM |
| 4-[2-(2,4-dimethoxyphenyl)-1,3-thiazol-4-yl]benzonitrile | 1973303: Inhibition of CYP1B1 (unknown origin) expressed in HEK293-T-REx cells co-expressing POR incubated for 1 hr by resorufin dye based plate reader analysis | ic50 | 0.0002 | uM |
| 6-bromo-2-(1H-pyrazol-4-ylmethyl)benzo[de]isoquinoline-1,3-dione | 2108194: Inhibition of recombinant human CYP1B1 using 7-ER as substrate in presence of NADPH by fluorescence based assay | ic50 | 0.0002 | uM |
| N-(2-fluoroethyl)-2-(4-iodophenyl)quinazolin-4-amine | 2082559: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate preincubated with enzyme for 5 mins followed by fluorescent substrate and NADPH addition and measured after 35 mins by EROD assay | ic50 | 0.0002 | uM |
| 2-(4-fluorophenyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assay | ic50 | 0.0003 | uM |
| 2-(3-chlorophenyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assay | ic50 | 0.0003 | uM |
| 2-(3-fluorophenyl)-3-hydroxy-6,7,10-trimethoxybenzo[h]chromen-4-one | 1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assay | ic50 | 0.0003 | uM |
| 2-(6-chloro-2-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0003 | uM |
| 4-[(E)-2-(2,4-dimethoxyphenyl)ethenyl]pyridine | 1973303: Inhibition of CYP1B1 (unknown origin) expressed in HEK293-T-REx cells co-expressing POR incubated for 1 hr by resorufin dye based plate reader analysis | ic50 | 0.0003 | uM |
| 6,7,10-trimethoxy-2-[4-(2H-triazol-4-yl)phenyl]benzo[h]chromen-4-one | 1688847: Inhibition of recombinant human CYP1B1 expressed in baculovirus infected insect cells using 7-ethoxyresorufin as substrate preincubated for 5 mins followed by NADPH addition and measured after 15 mins by EROD assay | ic50 | 0.0004 | uM |
| 2-(6-fluoro-2-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0004 | uM |
| 6-bromo-2-(1H-pyrrol-2-ylmethyl)benzo[de]isoquinoline-1,3-dione | 2108194: Inhibition of recombinant human CYP1B1 using 7-ER as substrate in presence of NADPH by fluorescence based assay | ic50 | 0.0004 | uM |
| 2-(3-chlorophenyl)benzo[h]chromen-4-one | 1581700: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate in presence of glucose-6-phosphate, glucose-6-phosphate dehydrogenase and NADPH-generating system incubated for 35 mins by fluorometry | ic50 | 0.0005 | uM |
| 2-[3-(trifluoromethyl)phenyl]benzo[h]chromen-4-one | 1581700: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate in presence of glucose-6-phosphate, glucose-6-phosphate dehydrogenase and NADPH-generating system incubated for 35 mins by fluorometry | ic50 | 0.0005 | uM |
| 2-(2-bromo-4-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0005 | uM |
| 2-(4-bromophenyl)quinazolin-4-amine;hydrochloride | 2082559: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate preincubated with enzyme for 5 mins followed by fluorescent substrate and NADPH addition and measured after 35 mins by EROD assay | ic50 | 0.0005 | uM |
| 2-phenylbenzo[h]chromen-4-one | 2108194: Inhibition of recombinant human CYP1B1 using 7-ER as substrate in presence of NADPH by fluorescence based assay | ic50 | 0.0006 | uM |
| 6,7,10-trimethoxy-2-pyridin-2-ylbenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0006 | uM |
| N-(3-fluorophenyl)-4-(4-pyridin-3-yl-1,3-thiazol-2-yl)-1,3-thiazol-2-amine | 1936828: Inhibition of recombinant human CYP1B1 using 7-ethyl-0-resorufin as substrate incubated for 30 mins in presence of NADPH by EROD assay | ic50 | 0.0006 | uM |
| 2-[3-[2-[2-[2-(2-aminoethoxy)ethoxy]ethoxy]ethoxy]-5-fluorophenyl]-6,7,10-trimethoxybenzo[h]chromen-4-one | 2023818: Inhibition of recombinant CYP1B1 (unknown origin) using 7-ethoxyresorufin as substrate preincubated for 5 mins followed by NADPH addition incubated for 35 mins by EROD assay | ic50 | 0.0007 | uM |
| 2-(4-fluorophenyl)-3-hydroxy-6,7,10-trimethoxybenzo[h]chromen-4-one | 1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assay | ic50 | 0.0008 | uM |
| 2-(4-chloro-2-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0008 | uM |
| 2-(1H-indol-6-yl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0009 | uM |
| 2-(1-benzofuran-2-yl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0009 | uM |
| 2-(2-fluoro-4-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0009 | uM |
| 6,7,10-trimethoxy-2-quinolin-2-ylbenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0010 | uM |
| 2,4-bis(2,4-dimethoxyphenyl)-1,3-thiazole | 1973303: Inhibition of CYP1B1 (unknown origin) expressed in HEK293-T-REx cells co-expressing POR incubated for 1 hr by resorufin dye based plate reader analysis | ic50 | 0.0010 | uM |
| 2-(6-amino-3-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0010 | uM |
| 2-(5-fluoro-3-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0010 | uM |
| 6,7,10-trimethoxy-2-pyridin-3-ylbenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0010 | uM |
| 2-(2-chlorophenyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assay | ic50 | 0.0011 | uM |
| 6,7,10-trimethoxy-2-(4-methoxyphenyl)benzo[h]chromen-4-one | 1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assay | ic50 | 0.0011 | uM |
| 2-(5-bromo-3-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0011 | uM |
| 2-(2-chloro-4-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0011 | uM |
| 2-(2-fluorophenyl)-3-hydroxy-6,7,10-trimethoxybenzo[h]chromen-4-one | 1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assay | ic50 | 0.0012 | uM |
| 6,7,10-trimethoxy-2-pyridin-4-ylbenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0012 | uM |
| 2-(furan-2-yl)-6,7,10-trimethoxybenzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0012 | uM |
| 6,7,10-trimethoxy-2-(6-methyl-2-pyridinyl)benzo[h]chromen-4-one | 1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assay | ic50 | 0.0012 | uM |
CTD chemical–gene interactions
563 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Tetrachlorodibenzodioxin | affects binding, increases reaction, increases activity, affects reaction, affects expression (+6 more) | 142 |
| Benzo(a)pyrene | increases activity, affects metabolic processing, increases expression, increases reaction, decreases reaction (+13 more) | 90 |
| Estradiol | increases reaction, affects reaction, affects metabolic processing, increases chemical synthesis, affects cotreatment (+9 more) | 29 |
| Particulate Matter | decreases reaction, increases expression, increases reaction, increases abundance, affects cotreatment (+2 more) | 27 |
| Tobacco Smoke Pollution | decreases reaction, affects expression, increases methylation, increases expression, increases reaction (+2 more) | 19 |
| Resveratrol | affects expression, affects binding, decreases activity, increases activity, increases expression (+6 more) | 18 |
| Vehicle Emissions | affects expression, increases reaction, increases abundance, decreases reaction, increases expression (+2 more) | 14 |
| alpha-naphthoflavone | decreases activity, decreases reaction, increases expression, affects cotreatment, increases metabolic processing (+2 more) | 11 |
| benz(a)anthracene | affects cotreatment, decreases reaction, increases expression, affects reaction | 11 |
| beta-Naphthoflavone | affects binding, decreases activity, increases expression | 11 |
| 3,4,5,3’,4’-pentachlorobiphenyl | decreases reaction, increases expression, affects expression, affects cotreatment, decreases expression (+1 more) | 10 |
| 2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide | decreases reaction, increases expression, affects cotreatment, decreases expression | 10 |
| Methylcholanthrene | affects binding, increases reaction, increases expression, increases activity | 10 |
| sodium arsenite | increases expression, affects methylation, decreases expression, affects cotreatment, increases abundance | 9 |
| 2,4,3’,5’-tetramethoxystilbene | increases expression, increases hydroxylation, increases metabolic processing, affects cotreatment, affects binding (+3 more) | 9 |
| 9,10-Dimethyl-1,2-benzanthracene | increases activity, increases chemical synthesis, increases reaction, decreases reaction, increases expression (+1 more) | 9 |
| bisphenol A | affects expression, decreases expression, affects localization, increases expression, increases reaction | 7 |
| trichostatin A | affects cotreatment, increases expression, decreases reaction, affects expression, increases reaction | 7 |
| chrysene | affects cotreatment, decreases reaction, increases expression | 7 |
| phenanthrene | decreases activity, increases activity, increases metabolic processing, increases abundance, decreases metabolic processing (+4 more) | 7 |
| 3’,4’-dimethoxyflavone | decreases reaction, increases activity, increases expression, decreases expression, affects binding (+1 more) | 7 |
| Polycyclic Aromatic Hydrocarbons | affects metabolic processing, affects cotreatment, increases abundance, increases expression, decreases expression | 7 |
| Quercetin | affects binding, decreases activity, decreases expression, increases expression | 7 |
| Valproic Acid | affects cotreatment, increases expression, decreases expression | 7 |
| benzo(k)fluoranthene | affects cotreatment, affects reaction, increases hydroxylation, increases expression | 6 |
| pyrene | increases hydroxylation, affects cotreatment, increases expression, affects binding, decreases activity (+2 more) | 6 |
| 2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridine | decreases expression, increases activity, increases metabolic processing, increases chemical synthesis, decreases reaction (+3 more) | 6 |
| 6-formylindolo(3,2-b)carbazole | affects binding, increases reaction, increases expression, decreases reaction | 6 |
| Fulvestrant | affects cotreatment, decreases methylation, affects methylation, decreases reaction, increases expression (+2 more) | 6 |
| Air Pollutants | affects response to substance, increases abundance, increases expression | 6 |
ChEMBL screening assays
408 unique, capped per target: 281 admet, 127 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2060324 | ADMET | Inhibition of CYP450 | Rapid identification of ETP-46992, orally bioavailable PI3K inhibitor, selective versus mTOR. — Bioorg Med Chem Lett |
| CHEMBL4614611 | Binding | Drug metabolism in human liver microsomes assessed as Cytochrome P450-mediated formation of 12-OHNVP by measuring Kcat/Km ratio in presence of NADPH regenerating reagents by uHPLC-MS/MS analysis | Twelfth-Position Deuteration of Nevirapine Reduces 12-Hydroxy-Nevirapine Formation and Nevirapine-Induced Hepatocyte Death. — J Med Chem |
Cellosaurus cell lines
6 cell lines: 3 cancer cell line, 1 spontaneously immortalized cell line, 1 transformed cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1EZ | Abcam A-549 CYP1B1 KO 1 | Cancer cell line | Male |
| CVCL_B5WP | V79MZh1B1 | Spontaneously immortalized cell line | Male |
| CVCL_B9CP | Abcam A-549 CYP1B1 KO 2 | Cancer cell line | Male |
| CVCL_C7JT | AHH-1 TK+/- h1B1/OR | Transformed cell line | Male |
| CVCL_D1S3 | Abcam U-87MG CYP1B1 KO | Cancer cell line | Male |
| CVCL_VD53 | ESi047-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
30 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT07396441 | PHASE4 | RECRUITING | Supplementary Kelulut Honey Therapy in Juvenile Open-Angle Glaucoma: Effects on IL-6, RNFL and Dry Eye |
| NCT04947124 | PHASE2 | COMPLETED | A Study to Determine the Safety and Tolerability of 2 Concentrations of QLS-101 |
| NCT01460017 | PHASE1 | UNKNOWN | Comparison Between Deep Sclerectomy and Traditional Trabeculotomy & Trabeculectomy in Congenital Glaucoma |
| NCT02121171 | PHASE1 | UNKNOWN | Combined Trab+Trab Versus Combined Trab+Trab With Subconjunctival Implantation of Ologen for Primary Congenital Glaucoma |
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
| NCT01020721 | Not specified | UNKNOWN | The Genetic Characteristics in South Korean Patients With Primary Congenital Glaucoma |
| NCT01136460 | Not specified | UNKNOWN | Genetic Testing in Primary Congenital Glaucoma Patients |
| NCT02945176 | Not specified | COMPLETED | Safety and Performance Study of the ARGOS-IO System in Patients Undergoing Boston Keratoprosthesis Implantation |
| NCT03077789 | Not specified | COMPLETED | Prospective Study of the Diagnostic and Therapeutic Management of Congenital Glaucoma in France |
| NCT03541551 | Not specified | COMPLETED | Ologen® Collagen Matrix in Patients With Primary Congenital Glaucoma Undergoing Trabeculectomy |
| NCT04079725 | Not specified | UNKNOWN | Iris Tissue in Primary Congenital Glaucoma |
| NCT04116450 | Not specified | COMPLETED | MicrocatheterTrabeculotomy in Primary Congenital Glaucoma |
| NCT04381611 | Not specified | ENROLLING_BY_INVITATION | INTEGRAL Study: A Longitudinal Study of Surgeries and Lasers in Glaucoma: Long-term Results and Success Predictors Analysed From a Large-scale Retrospective and Prospective Glaucoma Register |
| NCT04647929 | Not specified | WITHDRAWN | Comparison of Surgical Treatment Options for Primary Congenital and Developmental Glaucomas |
| NCT04683289 | Not specified | COMPLETED | Visco-Circumferential-Suture-Trabeculotomy Versus Trabeculotomy |
| NCT04709497 | Not specified | UNKNOWN | Surgery for Primary Congenital Glaucoma in Neonates |
| NCT04949555 | Not specified | UNKNOWN | Long Term Evaluation of Primary Congenital Glaucoma Management in Sohag University Hospital |
| NCT05011747 | Not specified | UNKNOWN | Viscotrabeculotomy in Pediatric Glaucoma Following Cataract Surgery |
| NCT05115708 | Not specified | UNKNOWN | Kahook Dual Blade Ab-interno Trabeculotomy Versus ab Externo Viscotrabeculotomy in Primary Congenital Glaucoma |
| NCT05205122 | Not specified | UNKNOWN | Evaluation of Primary Congenital Glaucoma at Asyut University Hospital |
| NCT05943184 | Not specified | COMPLETED | Cognitive Behavioral Nursing Model |
| NCT06189326 | Not specified | UNKNOWN | Non-penetrating Deep Sclerectomy Versus Trabeculotomy- Trabeculectomy Operation in Treatment of Primary Congenital Glaucoma |
| NCT07012252 | Not specified | COMPLETED | Optical Coherence Tomography of the Irido-Corneal Angle Before and After Goniotomy and Trabeculotomy in Primary Congenital Glaucoma |
| NCT07504315 | Not specified | NOT_YET_RECRUITING | Study Aim to Compare the Effect of Different Technique of Airway Managment During Anaesthesia on the Haemodynamics and Intraocular Pressure. Patients Were Divided Into Three Groups of 25 Patients Each. (Group A); Patients Who Were Subjected to LMA Insertion (Group B ). |
| NCT07550868 | Not specified | NOT_YET_RECRUITING | Goniotomy in Primary Congenital Glaucoma |
| NCT05641103 | Not specified | COMPLETED | PREDIGA 2: Spanish Acronym of Educational and Diagnostic Project for Gaucher and ASMD |
| NCT00368004 | Not specified | TERMINATED | Family Studies of Uveal Coloboma |
| NCT01778543 | Not specified | RECRUITING | Pathogenesis and Genetics of Microphthalmia, Anophthalmia and Uveal Coloboma (MAC) |
| NCT04833361 | Not specified | COMPLETED | Potential Environmental Causes of Uveal Coloboma |
| NCT06293560 | Not specified | RECRUITING | Microphthalmia, Anophthalmia, and Coloboma Genetic Epidemiology in Children |
Related Atlas pages
- Associated diseases: CYP1B1-related glaucoma with or without anterior segment dysgenesis, glaucoma 3A, Peters anomaly, congenital glaucoma
- Targeted by drugs: Berberine, Quercetin
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): anterior segment dysgenesis, anterior segment dysgenesis 6, basal cell carcinoma, cataract 17 multiple types, coloboma, congenital glaucoma, CYP1B1-related glaucoma with or without anterior segment dysgenesis, glaucoma 3, primary infantile, B, glaucoma 3A, juvenile open angle glaucoma, melanoma, myopathy, centronuclear, 5, OPTN-related open angle glaucoma, Peters anomaly, primary congenital glaucoma