CYP1B1

gene
On this page

Also known as CP1B

Summary

CYP1B1 (cytochrome P450 family 1 subfamily B member 1, HGNC:2597) is a protein-coding gene on chromosome 2p22.2, encoding Cytochrome P450 1B1 (Q16678). A cytochrome P450 monooxygenase involved in the metabolism of various endogenous substrates, including fatty acids, steroid hormones and vitamins.

This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. The enzyme encoded by this gene localizes to the endoplasmic reticulum and metabolizes procarcinogens such as polycyclic aromatic hydrocarbons and 17beta-estradiol. Mutations in this gene have been associated with primary congenital glaucoma; therefore it is thought that the enzyme also metabolizes a signaling molecule involved in eye development, possibly a steroid.

Source: NCBI Gene 1545 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): CYP1B1-related glaucoma with or without anterior segment dysgenesis (Definitive, ClinGen) — +3 more curated relationships
  • GWAS associations: 14
  • Clinical variants (ClinVar): 599 total — 56 pathogenic, 53 likely-pathogenic
  • Phenotypes (HPO): 48
  • Druggable target: yes — 22 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_000104

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:2597
Approved symbolCYP1B1
Namecytochrome P450 family 1 subfamily B member 1
Location2p22.2
Locus typegene with protein product
StatusApproved
AliasesCP1B
Ensembl geneENSG00000138061
Ensembl biotypeprotein_coding
OMIM601771
Entrez1545

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 10 protein_coding, 3 protein_coding_CDS_not_defined

ENST00000490576, ENST00000491456, ENST00000492443, ENST00000494864, ENST00000610745, ENST00000613082, ENST00000614273, ENST00000714520, ENST00000860003, ENST00000948951, ENST00000948952, ENST00000948953, ENST00000948954

RefSeq mRNA: 1 — MANE Select: NM_000104 NM_000104

CCDS: CCDS1793

Canonical transcript exons

ENST00000610745 — 3 exons

ExonStartEnd
ENSE000037242683807578038076151
ENSE000037344803807434638075389
ENSE000037383643806750938071310

Expression profiles

Bgee: expression breadth ubiquitous, 285 present calls, max score 99.62.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 23.6675 / max 622.1733, expressed in 1279 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter IDTPM avgSamples expressed
2784921.38591253
278481.4745535
278470.4971241
278450.199294
278460.110746

Top tissues by expression

291 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
pericardiumUBERON:000240799.62gold quality
cartilage tissueUBERON:000241899.30gold quality
synovial jointUBERON:000221799.08gold quality
trigeminal ganglionUBERON:000167598.89gold quality
dorsal root ganglionUBERON:000004498.86gold quality
layer of synovial tissueUBERON:000761698.76gold quality
tendon of biceps brachiiUBERON:000818898.20gold quality
superficial temporal arteryUBERON:000161497.99gold quality
hair follicleUBERON:000207397.88gold quality
urethraUBERON:000005797.71gold quality
cauda epididymisUBERON:000436096.50gold quality
tracheaUBERON:000312696.26gold quality
seminal vesicleUBERON:000099896.24gold quality
penisUBERON:000098995.72gold quality
nippleUBERON:000203095.61gold quality
cardia of stomachUBERON:000116295.34gold quality
heart right ventricleUBERON:000208095.15gold quality
choroid plexus epitheliumUBERON:000391195.06gold quality
parietal pleuraUBERON:000240094.96gold quality
olfactory bulbUBERON:000226494.75gold quality
trabecular bone tissueUBERON:000248394.51gold quality
pleuraUBERON:000097794.48gold quality
mammary ductUBERON:000176594.16gold quality
renal medullaUBERON:000036294.00gold quality
tibiaUBERON:000097993.97gold quality
monocyteCL:000057693.96gold quality
caput epididymisUBERON:000435893.85gold quality
mononuclear cellCL:000084293.79gold quality
vena cavaUBERON:000408793.78gold quality
leukocyteCL:000073893.57gold quality

Single-cell (SCXA)

Detected in 13 experiment(s), a significant marker in 12.

ExperimentMarker?Max mean expression
E-MTAB-11121yes1545.15
E-MTAB-8142yes1318.74
E-MTAB-10283yes1026.37
E-GEOD-114530yes956.81
E-GEOD-124472yes819.39
E-HCAD-10yes522.26
E-GEOD-135922yes49.65
E-GEOD-134144yes38.22
E-HCAD-4yes22.02
E-CURD-112yes11.17
E-MTAB-9543yes7.70
E-MTAB-6108no929.68
E-ANND-3no0.00

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): AHR, AR, ARNT, BRCA1, CREB1, EP300, ESR1, ESR2, KAT2B, NR5A1, PARP1, PAX6, SP1, TBP, TCF3

miRNA regulators (miRDB)

141 targeting CYP1B1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-513A-5P100.0069.772465
HSA-MIR-4795-3P100.0074.624024
HSA-MIR-4481100.0066.421669
HSA-MIR-8485100.0077.574731
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-1277-5P100.0073.955056
HSA-MIR-3163100.0077.238605
HSA-MIR-656-3P100.0072.152788
HSA-MIR-200B-3P100.0073.312693
HSA-MIR-200C-3P100.0073.352685
HSA-MIR-429100.0073.442698
HSA-MIR-4768-5P100.0069.492861
HSA-MIR-6833-3P100.0070.633197
HSA-MIR-6873-3P100.0071.422626
HSA-MIR-7110-3P100.0073.182486
HSA-MIR-428299.9975.366408
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-433-3P99.9869.371203
HSA-MIR-4745-5P99.9865.951028
HSA-MIR-27A-3P99.9872.132955
HSA-MIR-27B-3P99.9872.132955
HSA-MIR-998599.9872.112939
HSA-MIR-548N99.9871.944170
HSA-MIR-314899.9775.066478
HSA-MIR-60799.9773.625593
HSA-MIR-590-3P99.9674.346478
HSA-MIR-548AJ-3P99.9673.385345
HSA-MIR-548X-3P99.9673.385345
HSA-MIR-55999.9572.283609
HSA-MIR-6772-5P99.9467.01577

Literature-anchored findings (GeneRIF, showing 40)

  • mutations in a patient with Peters’ anomaly (PMID:11403040)
  • CYP1B1 mutations for congenital glaucoma (PMID:11558822)
  • Investigators examining possible associations between early menarche and mutations in genes of estrogen metabolism found no such association for this gene. (PMID:11749050)
  • digenic inheritance of early-onset glaucoma: CYP1B1, a potential modifier gene (PMID:11774072)
  • airborne particulates generated during the frying of beef, fish and pork can induce carcinogen-metabolizing CYP1B1 in the human lung-derived cell line (PMID:11955671)
  • CYP1B1 polymorphism in prostate neoplasms (PMID:12200121)
  • CYP1B1 mRNA is expressed in human liver and the levels are increased in smokers, but the protein is undetectable. (PMID:12520071)
  • CYP1B1 gene is a major gene associated with primary congenital glaucoma (GLC3A). (PMID:12525557)
  • The phenotypic expression of 3 patients confirm the crucial role of CYP1B1 mutations for congenital glaucoma. (PMID:12567107)
  • High-activity CYP1A2 and CYP1B1 alleles, whose gene products metabolize estradiol, were not associated with pubertal stage. (PMID:12692107)
  • polymorphism and risk of endometrial cancer (PMID:12770747)
  • Single amino acid mutations, but not common polymorphisms, decrease the activity of CYP1B1 against (-)benzo[a]pyrene-7R-trans-7,8-dihydrodiol. (PMID:12807732)
  • CYP1B1 is a senescence-associated gene in normal human oral keratinocytes. (PMID:12837283)
  • the studied CYP1B1 gene polymorphisms do not influence breast cancer risk overall but may modify the risk after long-term menopausal hormone use. (PMID:12844487)
  • Identification of R368H as a predominant CYP1B1 allele causing primary congenital glaucoma in Indian patients. (PMID:14507861)
  • Carriers of the CYP1B1 Ser allele had a statistically significant decreased risk of endometrial cancer. (PMID:14656940)
  • Four founder mutations were identified in congenital glaucoma patients in two ethnically heterogeneous populations. (PMID:14729846)
  • Single Nucleotide Polymorphisms of CYP1B1 is associated with breast cancer (PMID:14734460)
  • Mutations in CYPIBI are not a major cause of PCG (primary congenital glaucoma) in this population and that at least one additional locus for this condition is responsible for most cases. (PMID:15255109)
  • CYP1B1*3 does not have a role in ovarian cancer development in the Italian Caucasian population (PMID:15255550)
  • CYP1B1 is induced in tobacco smoke-induced carcinogenesis in the aerodigestive tract. (PMID:15297370)
  • Transcription factors with an affinity for Sp1 sites mediate transcriptional activation of the CYP1B1 gene in biotin-supplemented T cells, increasing the occurrence of single-stranded DNA breaks. (PMID:15333708)
  • CYP1B1 mutations might pose a significant risk for early-onset primary open-angle glaucoma and might also modify glaucoma phenotype in patients who do not carry a MYOCILIN mutation (PMID:15342693)
  • The number of full-term pregnancies and the CYP1B1-4 polymorphism are significant predictors of timing of natural menopause in Caucasian women. (PMID:15774541)
  • cytochrome P450 1B1 (CYP1B1) is inhibited by coumarins, regardles of the CYP1B1 polymorphism (PMID:15861043)
  • Methoxylated dietary flavonoids may be potent chemoprotectants by direct inhibition of CYP1B1/1A1 function and/or their protein expression in mouth mucosa and cancer. (PMID:15905203)
  • CYP1B1 Leu(432)Val alone and in combination with Phase II enzyme polymorphisms was more strongly associated with increased lung cancer susceptibility among those with at least some household environmental tobacco smoke exposure (PMID:16051642)
  • Hypomethylation of the CYP1B1 gene may play an important role in prostate cancer. (PMID:16115918)
  • A common polymorphism in the CYP1B1 gene was associated with changes in urinary estrogen levels: both Caucasian and African-American women carrying the variant allele showed higher urinary metabolite ratios than women with the wild-type allele. (PMID:16207128)
  • The common N453S coding variant of CYP1B1 is potentially a factor of severity in POAG patients. (PMID:16319821)
  • The strong association of specific haplotypes with some predominant CYP1B1 mutations underlying primary congenital glaucoma (PCG) and the observed geographical clustering, may be useful for predictive testing. (PMID:16384942)
  • The CYP1B1 mutation spectrum of Kuwaiti PCG (primary congenital glaucoma) patients is similar to that detected in the neighboring countries. (PMID:16490498)
  • The frequency of mutations in the FOXC1, GJA1, PITX2, and CYP1B1 genes in this study were 25%, 12.5%, 0% and 0%, respectively. (PMID:16638984)
  • On rare occasions CYP1B1 may be primarily responsible for juvenile primary open-angle glaucoma by possible monogenic association. (PMID:16688110)
  • This study supports the role of CYP1B1 as a causative gene in Peters anomaly. Furthermore, this emphasizes the broad range of phenotypic expression for CYP1B1 mutations, and its role in eye development. (PMID:16735991)
  • Founder effects for most of CYP1B1 mutations. (PMID:16735994)
  • The results from this study suggested that CYP1B1 genetic polymorphisms may be associated with the natural onset of menopause. (PMID:16766147)
  • Strong evidence against the existence of a substantial overall association between common genetic variation in CYP1B1 and breast cancer risk. (PMID:16847423)
  • Heterozygous CYP1B1 mutations could confer increased susceptibility to the development of primary open angle glaucoma in the Spanish population. (PMID:16862072)
  • The urinary levels of estradiola nd estrogen metabolites associated with polymorphisms of CYP1A1 AND CYP1B1 in premenopausal/perimenopausal women are reported. (PMID:16949388)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_reriocyp1b1ENSDARG00000068934
mus_musculusCyp1b1ENSMUSG00000024087
rattus_norvegicusCyp1b1ENSRNOG00000040287

Paralogs (2): CYP1A1 (ENSG00000140465), CYP1A2 (ENSG00000140505)

Protein

Protein identifiers

Cytochrome P450 1B1Q16678 (reviewed: Q16678)

Alternative names: CYPIB1, Hydroperoxy icosatetraenoate dehydratase

All UniProt accessions (3): Q16678, A0A087WUQ7, A0A087WW26

UniProt curated annotations — full annotation on UniProt →

Function. A cytochrome P450 monooxygenase involved in the metabolism of various endogenous substrates, including fatty acids, steroid hormones and vitamins. Mechanistically, uses molecular oxygen inserting one oxygen atom into a substrate, and reducing the second into a water molecule, with two electrons provided by NADPH via cytochrome P450 reductase (NADPH–hemoprotein reductase). Exhibits catalytic activity for the formation of hydroxyestrogens from estrone (E1) and 17beta-estradiol (E2), namely 2- and 4-hydroxy E1 and E2. Displays a predominant hydroxylase activity toward E2 at the C-4 position. Metabolizes testosterone and progesterone to B or D ring hydroxylated metabolites. May act as a major enzyme for all-trans retinoic acid biosynthesis in extrahepatic tissues. Catalyzes two successive oxidative transformation of all-trans retinol to all-trans retinal and then to the active form all-trans retinoic acid. Catalyzes the epoxidation of double bonds of certain PUFA. Converts arachidonic acid toward epoxyeicosatrienoic acid (EpETrE) regioisomers, 8,9-, 11,12-, and 14,15- EpETrE, that function as lipid mediators in the vascular system. Additionally, displays dehydratase activity toward oxygenated eicosanoids hydroperoxyeicosatetraenoates (HpETEs). This activity is independent of cytochrome P450 reductase, NADPH, and O2. Also involved in the oxidative metabolism of xenobiotics, particularly converting polycyclic aromatic hydrocarbons and heterocyclic aryl amines procarcinogens to DNA-damaging products. Plays an important role in retinal vascular development. Under hyperoxic O2 conditions, promotes retinal angiogenesis and capillary morphogenesis, likely by metabolizing the oxygenated products generated during the oxidative stress. Also, contributes to oxidative homeostasis and ultrastructural organization and function of trabecular meshwork tissue through modulation of POSTN expression.

Subcellular location. Endoplasmic reticulum membrane. Microsome membrane. Mitochondrion.

Tissue specificity. Expressed in heart, brain, lung, skeletal muscle, kidney, spleen, thymus, prostate, testis, ovary, small intestine, colon, and peripheral blood leukocytes. Expressed in retinal endothelial cells and umbilical vein endothelial cells (at protein level).

Disease relevance. Anterior segment dysgenesis 6 (ASGD6) [MIM:617315] A form of anterior segment dysgenesis, a group of defects affecting anterior structures of the eye including cornea, iris, lens, trabecular meshwork, and Schlemm canal. Anterior segment dysgeneses result from abnormal migration or differentiation of the neural crest derived mesenchymal cells that give rise to components of the anterior chamber during eye development. Different anterior segment anomalies may exist alone or in combination, including iris hypoplasia, enlarged or reduced corneal diameter, corneal vascularization and opacity, posterior embryotoxon, corectopia, polycoria, abnormal iridocorneal angle, ectopia lentis, and anterior synechiae between the iris and posterior corneal surface. Clinical conditions falling within the phenotypic spectrum of anterior segment dysgeneses include aniridia, Axenfeld anomaly, Reiger anomaly/syndrome, Peters anomaly, and iridogoniodysgenesis. ASGD6 patients predominantly manifest Peters anomaly. Peters anomaly consists of corneal leukoma, defects in the posterior structures of the cornea such as absence of the posterior corneal stroma and Descemet membrane, and a variable degree of iridocorneal and/or keratolenticular adhesions. Over 50% of patients develop glaucoma in childhood. The disease is caused by variants affecting the gene represented in this entry. Glaucoma 3, primary congenital, A (GLC3A) [MIM:231300] An autosomal recessive form of primary congenital glaucoma (PCG). PCG is characterized by marked increase of intraocular pressure at birth or early childhood, large ocular globes (buphthalmos) and corneal edema. It results from developmental defects of the trabecular meshwork and anterior chamber angle of the eye that prevent adequate drainage of aqueous humor. The disease is caused by variants affecting distinct genetic loci, including the gene represented in this entry. Glaucoma 1, open angle, A (GLC1A) [MIM:137750] A form of primary open angle glaucoma (POAG). POAG is characterized by a specific pattern of optic nerve and visual field defects. The angle of the anterior chamber of the eye is open, and usually the intraocular pressure is increased. However, glaucoma can occur at any intraocular pressure. The disease is generally asymptomatic until the late stages, by which time significant and irreversible optic nerve damage has already taken place. The gene represented in this entry acts as a disease modifier. Digenic mutations in CYP1B1 and MYOC have been found in a family segregating both primary adult-onset and juvenile forms of open angle glaucoma. All affected family members with mutations in both MYOC and CYP1B1 had juvenile glaucoma, whereas those with only the MYOC mutation had the adult-onset form.

Activity regulation. Enzyme activity is increased by liposomes containing anionic phospholipids, phosphatidic acid and cardiolipin. Inhibited by naringenin with an IC(50) of 5 uM. Enzyme activity is increased by cytochrome b5.

Induction. By polycyclic aromatic hydrocarbons (PAH) and 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD).

Pathway. Steroid hormone biosynthesis. Cofactor metabolism; retinol metabolism. Lipid metabolism; arachidonate metabolism.

Polymorphism. Various CYP1B1 alleles are known. The sequence shown is that of allele CYP1B1*1.

Similarity. Belongs to the cytochrome P450 family.

RefSeq proteins (1): NP_000095* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR001128Cyt_P450Family
IPR002401Cyt_P450_E_grp-IFamily
IPR017972Cyt_P450_CSConserved_site
IPR036396Cyt_P450_sfHomologous_superfamily

Pfam: PF00067

Catalyzed reactions (Rhea), 12 shown:

  • an organic molecule + reduced [NADPH–hemoprotein reductase] + O2 = an alcohol + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:17149)
  • (12S)-hydroperoxy-(5Z,8Z,10E,14Z)-eicosatetraenoate = 12-oxo-(5Z,8Z,10E,14Z)-eicosatetraenoate + H2O (RHEA:37947)
  • all-trans-retinal + reduced [NADPH–hemoprotein reductase] + O2 = all-trans-retinoate + oxidized [NADPH–hemoprotein reductase] + H2O + 2 H(+) (RHEA:42088)
  • all-trans-retinol + reduced [NADPH–hemoprotein reductase] + O2 = all-trans-retinal + oxidized [NADPH–hemoprotein reductase] + 2 H2O + H(+) (RHEA:42092)
  • testosterone + reduced [NADPH–hemoprotein reductase] + O2 = 6beta,17beta-dihydroxyandrost-4-en-3-one + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:46296)
  • estrone + reduced [NADPH–hemoprotein reductase] + O2 = 2-hydroxyestrone + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:47208)
  • 17beta-estradiol + reduced [NADPH–hemoprotein reductase] + O2 = 2-hydroxy-17beta-estradiol + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:47212)
  • progesterone + reduced [NADPH–hemoprotein reductase] + O2 = 6beta-hydroxyprogesterone + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:47252)
  • progesterone + reduced [NADPH–hemoprotein reductase] + O2 = 16alpha-hydroxyprogesterone + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:47260)
  • 17beta-estradiol + reduced [NADPH–hemoprotein reductase] + O2 = 4-hydroxy-17beta-estradiol + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:47280)
  • estrone + reduced [NADPH–hemoprotein reductase] + O2 = 4-hydroxyestrone + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:47292)
  • (5S)-hydroperoxy-(6E,8Z,11Z,14Z)-eicosatetraenoate = 5-oxo-(6E,8Z,11Z,14Z)-eicosatetraenoate + H2O (RHEA:48632)

UniProt features (102 total): sequence variant 63, helix 22, strand 10, turn 3, chain 1, binding site 1, site 1, mutagenesis site 1

Structure

Experimental structures (PDB)

2 structures.

PDBMethodResolution (Å)
3PM0X-RAY DIFFRACTION2.7
6IQ5X-RAY DIFFRACTION3.7

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q16678-F192.290.81

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (1): 395 (major determinant of cyp1b1 17beta-estradiol hydroxylation regiospecificity)

Ligand- & substrate-binding residues (1): 470 (axial binding residue)

Mutagenesis-validated functional residues (1):

PositionPhenotype
395invertes the 4oh e2:2oh e2 hydroxylation preference from 5.1 to 0.45.

Function

Pathways and Gene Ontology

Reactome pathways

4 pathways

IDPathway
R-HSA-211976Endogenous sterols
R-HSA-2142670Synthesis of epoxy (EET) and dihydroxyeicosatrienoic acids (DHET)
R-HSA-2142816Synthesis of (16-20)-hydroxyeicosatetraenoic acids (HETE)
R-HSA-5579000Defective CYP1B1 causes Glaucoma

MSigDB gene sets: 575 (showing top): MODULE_93, KOBAYASHI_EGFR_SIGNALING_24HR_UP, REACTOME_BIOLOGICAL_OXIDATIONS, GOBP_COLLAGEN_FIBRIL_ORGANIZATION, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_PAIRED_DONORS_WITH_INCORPORATION_OR_REDUCTION_OF_MOLECULAR_OXYGEN, PAL_PRMT5_TARGETS_UP, MODULE_45, GOZGIT_ESR1_TARGETS_DN, CHUANG_OXIDATIVE_STRESS_RESPONSE_UP, GOBP_POSITIVE_REGULATION_OF_VASCULATURE_DEVELOPMENT, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, DACOSTA_UV_RESPONSE_VIA_ERCC3_UP, GOBP_REGULATION_OF_HORMONE_LEVELS, REACTOME_ENDOGENOUS_STEROLS

GO Biological Process (41): angiogenesis (GO:0001525), trabecular meshwork development (GO:0002930), steroid catabolic process (GO:0006706), xenobiotic metabolic process (GO:0006805), nitric oxide biosynthetic process (GO:0006809), cell adhesion (GO:0007155), steroid metabolic process (GO:0008202), estrogen metabolic process (GO:0008210), negative regulation of cell population proliferation (GO:0008285), intrinsic apoptotic signaling pathway in response to oxidative stress (GO:0008631), toxin metabolic process (GO:0009404), response to toxic substance (GO:0009636), positive regulation of vascular endothelial growth factor production (GO:0010575), sterol metabolic process (GO:0016125), arachidonate metabolic process (GO:0019369), epoxygenase P450 pathway (GO:0019373), collagen fibril organization (GO:0030199), negative regulation of cell migration (GO:0030336), obsolete negative regulation of NF-kappaB transcription factor activity (GO:0032088), negative regulation of cell adhesion mediated by integrin (GO:0033629), xenobiotic catabolic process (GO:0042178), benzene-containing compound metabolic process (GO:0042537), retinol metabolic process (GO:0042572), retinal metabolic process (GO:0042574), positive regulation of apoptotic process (GO:0043065), blood vessel endothelial cell migration (GO:0043534), endothelial cell migration (GO:0043542), positive regulation of angiogenesis (GO:0045766), positive regulation of receptor signaling pathway via JAK-STAT (GO:0046427), obsolete membrane lipid catabolic process (GO:0046466), blood vessel morphogenesis (GO:0048514), retinal blood vessel morphogenesis (GO:0061304), cellular response to hydrogen peroxide (GO:0070301), endothelial cell-cell adhesion (GO:0071603), omega-hydroxylase P450 pathway (GO:0097267), regulation of reactive oxygen species metabolic process (GO:2000377), lipid metabolic process (GO:0006629), fatty acid metabolic process (GO:0006631), hormone metabolic process (GO:0042445), retina vasculature development in camera-type eye (GO:0061298)

GO Molecular Function (15): monooxygenase activity (GO:0004497), iron ion binding (GO:0005506), steroid hydroxylase activity (GO:0008395), oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen (GO:0016709), oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen (GO:0016712), heme binding (GO:0020037), testosterone 6-beta-hydroxylase activity (GO:0050649), estrogen 16-alpha-hydroxylase activity (GO:0101020), estrogen 2-hydroxylase activity (GO:0101021), hydroperoxy icosatetraenoate dehydratase activity (GO:0106256), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), lyase activity (GO:0016829), metal ion binding (GO:0046872)

GO Cellular Component (4): mitochondrion (GO:0005739), endoplasmic reticulum membrane (GO:0005789), endoplasmic reticulum (GO:0005783), membrane (GO:0016020)

Reactome top-level categories

Rollup of top-3 pathways:

CategoryPathways
Arachidonate metabolism2
Cytochrome P450 - arranged by substrate type1
Metabolic disorders of biological oxidation enzymes1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
steroid metabolic process3
monooxygenase activity3
steroid hydroxylase activity3
oxidoreductase activity2
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen2
catalytic activity2
cytoplasm2
intracellular membrane-bounded organelle2
blood vessel morphogenesis1
anatomical structure formation involved in morphogenesis1
tissue development1
camera-type eye development1
lipid catabolic process1
metabolic process1
cellular response to xenobiotic stimulus1
biosynthetic process1
nitric oxide metabolic process1
cellular process1
lipid metabolic process1
hormone metabolic process1
cell population proliferation1
regulation of cell population proliferation1
negative regulation of cellular process1
intrinsic apoptotic signaling pathway1
secondary metabolic process1
response to chemical1
positive regulation of cytokine production1
vascular endothelial growth factor production1
regulation of vascular endothelial growth factor production1
long-chain fatty acid metabolic process1
icosanoid metabolic process1
unsaturated fatty acid metabolic process1
olefinic compound metabolic process1
arachidonate metabolic process1
extracellular matrix organization1
cell migration1
regulation of cell migration1
negative regulation of cell motility1
negative regulation of cell adhesion1

Protein interactions and networks

STRING

2850 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
CYP1B1MYOCQ99972944
CYP1B1PPIGQ13427910
CYP1B1FOXC1Q12948849
CYP1B1PITX2Q99697832
CYP1B1WDR36Q8NI36813
CYP1B1NQO1P15559794
CYP1B1LTBP2Q14767788
CYP1B1SULT1A1P50225747
CYP1B1AHRRA9YTQ3746
CYP1B1GSTP1P09211722
CYP1B1COMTP21964720
CYP1B1FOXQ1Q9C009713
CYP1B1ARNTP27540706
CYP1B1ASB10Q8WXI3704
CYP1B1OPTNQ96CV9698

IntAct

13 interactions, top by confidence:

ABTypeScore
CYP1B1PGRMC1psi-mi:“MI:0915”(physical association)0.400
CYP1B1TEKpsi-mi:“MI:0915”(physical association)0.400
HSPB2CYP1B1psi-mi:“MI:0915”(physical association)0.370
ESR1ESYT2psi-mi:“MI:0914”(association)0.350
TMEM223psi-mi:“MI:0914”(association)0.350
SAE1CYP1B1psi-mi:“MI:0915”(physical association)0.000
fieFCYP1B1psi-mi:“MI:0915”(physical association)0.000

BioGRID (20): CYP1B1 (Two-hybrid), CYP1B1 (Affinity Capture-MS), CYP1B1 (Affinity Capture-MS), CYP1B1 (Co-localization), CYP1B1 (Co-localization), CYP1B1 (Co-localization), CYP1B1 (Co-localization), PGRMC1 (Affinity Capture-MS), CYP1B1 (Affinity Capture-MS), CYP1B1 (Proximity Label-MS), CYP1B1 (Proximity Label-MS), CYP1B1 (Proximity Label-MS), CYP1B1 (Proximity Label-MS), CYP1B1 (Affinity Capture-MS), CYP1B1 (Affinity Capture-RNA)

ESM2 similar proteins: B2RXA7, E1BHJ4, F1RE08, G3V7X8, I1GQE7, O02766, O15528, O35084, O35132, O43174, O55127, O88962, O93323, P00191, P03940, P08686, P0DOX0, P12394, P15540, P30437, P51871, P70085, P98187, Q07973, Q08D50, Q09128, Q16678, Q2LA59, Q2LA60, Q2LCM1, Q3MID2, Q4G0S4, Q5VRM7, Q60991, Q64429, Q64441, Q64562, Q64678, Q6EIG3, Q6V0L0

Diamond homologs: O18809, O35293, O42231, O42430, O42457, O54749, O54750, O55071, O57525, O73853, O77809, O77810, O93297, P00176, P00178, P00179, P00182, P00184, P00185, P00186, P00187, P04167, P04798, P04799, P05176, P05177, P05180, P08683, P10610, P10634, P11371, P11711, P11712, P11715, P12394, P12789, P12790, P12938, P13107, P15123

SIGNOR signaling

6 interactions.

AEffectBMechanism
AHR“up-regulates quantity by expression”CYP1B1“transcriptional regulation”
ARNT“up-regulates quantity by expression”CYP1B1“transcriptional regulation”
SP1“up-regulates quantity by expression”CYP1B1“transcriptional regulation”
CYP1B1“up-regulates quantity”4-hydroxy-17beta-estradiol“chemical modification”
CYP1B1“up-regulates quantity”17beta-estradiol“chemical modification”

Disease & clinical

Clinical variants and AI predictions

ClinVar

599 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic56
Likely pathogenic53
Uncertain significance208
Likely benign214
Benign23

Top pathogenic / likely-pathogenic (30)

Variant IDHGVSClassification
1120045NM_000104.4(CYP1B1):c.434_443del (p.Arg145fs)Pathogenic
1254629NM_000104.4(CYP1B1):c.1310C>T (p.Pro437Leu)Pathogenic
1322184NM_000104.4(CYP1B1):c.517G>T (p.Glu173Ter)Pathogenic
1335387NM_000104.4(CYP1B1):c.797GCAACTTCA[1] (p.Ser269_Phe271del)Pathogenic
1339135NM_000104.4(CYP1B1):c.1044-2A>GPathogenic
1339668NM_000104.4(CYP1B1):c.1090G>A (p.Val364Met)Pathogenic
1339669NM_000104.4(CYP1B1):c.970_971dup (p.Thr325fs)Pathogenic
1412564NM_000104.4(CYP1B1):c.1063C>T (p.Arg355Ter)Pathogenic
1442930NM_000104.4(CYP1B1):c.55C>T (p.Gln19Ter)Pathogenic
2098650NM_000104.4(CYP1B1):c.350G>T (p.Arg117Leu)Pathogenic
2203048NM_000104.4(CYP1B1):c.1168C>A (p.Arg390Ser)Pathogenic
2203049NM_000104.4(CYP1B1):c.988_989delinsTT (p.Ala330Phe)Pathogenic
2203050NM_000104.4(CYP1B1):c.217_218del (p.Ser73fs)Pathogenic
2577219NM_000104.4(CYP1B1):c.317C>A (p.Ala106Asp)Pathogenic
2681137NM_000104.4(CYP1B1):c.868del (p.Arg290fs)Pathogenic
2681139NM_000104.4(CYP1B1):c.1023G>A (p.Trp341Ter)Pathogenic
2687741NM_000104.4(CYP1B1):c.9del (p.Ser4fs)Pathogenic
2705933NM_000104.4(CYP1B1):c.2T>G (p.Met1Arg)Pathogenic
2710978NM_000104.4(CYP1B1):c.873_877dup (p.Met293delinsThrTer)Pathogenic
2720250NM_000104.4(CYP1B1):c.1425_1428del (p.Ser476fs)Pathogenic
2734165NM_000104.4(CYP1B1):c.243C>G (p.Tyr81Ter)Pathogenic
2764029NM_000104.4(CYP1B1):c.836_863del (p.His279fs)Pathogenic
2768652NM_000104.4(CYP1B1):c.243del (p.Arg80_Tyr81insTer)Pathogenic
282564NM_000104.4(CYP1B1):c.1064_1076del (p.Arg355fs)Pathogenic
2827579NM_000104.4(CYP1B1):c.982_990del (p.Phe328_Ala330del)Pathogenic
2843498NM_000104.4(CYP1B1):c.1400_1411del (p.Lys467_Cys470del)Pathogenic
2849349NM_000104.4(CYP1B1):c.1057C>T (p.Gln353Ter)Pathogenic
3236111NM_000104.4(CYP1B1):c.83C>A (p.Ser28Ter)Pathogenic
335952NM_000104.4(CYP1B1):c.1168C>T (p.Arg390Cys)Pathogenic
3389610NM_000104.4(CYP1B1):c.896_897del (p.Ser299fs)Pathogenic

SpliceAI

343 predictions. Top by Δscore:

VariantEffectΔscore
2:38071325:A:ACacceptor_gain1.0000
2:38071308:TACC:Tacceptor_loss0.9900
2:38071310:CCTG:Cacceptor_loss0.9900
2:38071311:C:CAacceptor_loss0.9900
2:38071318:G:Cacceptor_gain0.9900
2:38071318:G:GCacceptor_gain0.9900
2:38071322:T:Cacceptor_gain0.9900
2:38071322:T:TCacceptor_gain0.9900
2:38071325:A:Cacceptor_gain0.9900
2:38071327:G:Cacceptor_gain0.9900
2:38071327:G:GCacceptor_gain0.9900
2:38074340:CTTTA:Cdonor_loss0.9900
2:38074341:TTTA:Tdonor_loss0.9900
2:38074342:TTA:Tdonor_loss0.9900
2:38074343:TACCT:Tdonor_loss0.9900
2:38074344:A:Tdonor_loss0.9900
2:38074345:C:CTdonor_loss0.9900
2:38075385:CCATG:Cacceptor_gain0.9900
2:38075386:CATGC:Cacceptor_gain0.9900
2:38075388:TG:Tacceptor_gain0.9900
2:38071308:TAC:Tacceptor_gain0.9800
2:38071320:G:Cacceptor_gain0.9800
2:38071320:G:GCacceptor_gain0.9800
2:38071321:T:TCacceptor_gain0.9800
2:38075390:C:CCacceptor_gain0.9800
2:38071321:T:Cacceptor_gain0.9700
2:38075386:CATG:Cacceptor_gain0.9700
2:38071309:AC:Aacceptor_gain0.9600
2:38071310:CC:Cacceptor_gain0.9600
2:38071311:C:CCacceptor_gain0.9600

AlphaMissense

3576 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
2:38071019:G:CF445L0.995
2:38071019:G:TF445L0.995
2:38071021:A:GF445L0.995
2:38070965:A:CF463L0.994
2:38070965:A:TF463L0.994
2:38070967:A:GF463L0.994
2:38071085:G:CN423K0.994
2:38071085:G:TN423K0.994
2:38071095:A:TV420D0.994
2:38071175:G:CS393R0.993
2:38071175:G:TS393R0.993
2:38071177:T:GS393R0.993
2:38071194:T:AE387V0.993
2:38074396:G:CS331R0.993
2:38074396:G:TS331R0.993
2:38074398:T:GS331R0.993
2:38071153:G:CH401D0.991
2:38071186:G:TR390S0.991
2:38074987:G:CF134L0.991
2:38074987:G:TF134L0.991
2:38074989:A:GF134L0.991
2:38074368:A:GW341R0.990
2:38074368:A:TW341R0.990
2:38074665:C:GD242H0.990
2:38074764:A:GC209R0.989
2:38071089:A:TV422D0.988
2:38070950:C:AR468S0.987
2:38070950:C:GR468S0.987
2:38071020:A:GF445S0.987
2:38071054:A:GW434R0.987

dbSNP variants (sampled 300 via entrez): RS1000265348 (2:38070419 T>C), RS1000395365 (2:38075183 G>A,T), RS1000604188 (2:38068913 C>A,T), RS1000852529 (2:38075340 A>G), RS1000878158 (2:38067642 G>A), RS1001132290 (2:38074095 G>A), RS10012 (2:38075247 G>A,C,T), RS1001337556 (2:38069332 G>A), RS1001561744 (2:38074975 C>G,T), RS1001788696 (2:38069716 C>T), RS1001839676 (2:38073549 G>T), RS1001874715 (2:38078056 G>C), RS1001893622 (2:38073699 C>A,T), RS1002021767 (2:38077314 G>T), RS1002328553 (2:38077799 G>A,T)

Disease associations

OMIM: gene MIM:601771 | disease phenotypes: MIM:231300, MIM:617315, MIM:600975, MIM:604229, MIM:107250, MIM:611544, MIM:615959, MIM:137760

GenCC curated gene-disease

DiseaseClassificationInheritance
CYP1B1-related glaucoma with or without anterior segment dysgenesisDefinitiveAutosomal recessive
glaucoma 3ADefinitiveAutosomal recessive
Peters anomalySupportiveAutosomal dominant
congenital glaucomaSupportiveAutosomal dominant

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
CYP1B1-related glaucoma with or without anterior segment dysgenesisDefinitiveAR

Mondo (13): congenital glaucoma (MONDO:0020366), glaucoma 3A (MONDO:0009277), anterior segment dysgenesis 6 (MONDO:0015016), CYP1B1-related glaucoma with or without anterior segment dysgenesis (MONDO:0800472), primary congenital glaucoma (MONDO:0000365), glaucoma 3, primary infantile, B (MONDO:0010968), Peters anomaly (MONDO:0011414), anterior segment dysgenesis (MONDO:0019503), coloboma (MONDO:0001476), cataract 17 multiple types (MONDO:0012688), juvenile open angle glaucoma (MONDO:0020367), myopathy, centronuclear, 5 (MONDO:0014418), OPTN-related open angle glaucoma (MONDO:0100553)

Orphanet (7): Congenital glaucoma (Orphanet:98976), Juvenile glaucoma (Orphanet:98977), Peters anomaly (Orphanet:708), Anterior segment developmental anomaly (Orphanet:88632), OBSOLETE: Ocular coloboma (Orphanet:194), Early onset non-syndromic cataract (Orphanet:91492), Autosomal recessive centronuclear myopathy (Orphanet:169186)

HPO phenotypes

48 total (30 of 48 shown, HPO-id order):

HPOTerm
HP:0000007Autosomal recessive inheritance
HP:0000485Megalocornea
HP:0000486Strabismus
HP:0000501Glaucoma
HP:0000505Visual impairment
HP:0000523Subcapsular cataract
HP:0000525Abnormality iris morphology
HP:0000545Myopia
HP:0000557Buphthalmos
HP:0000572Visual loss
HP:0000587Abnormal optic nerve morphology
HP:0000593Abnormal anterior chamber morphology
HP:0000603Central scotoma
HP:0000613Photophobia
HP:0000639Nystagmus
HP:0000643Blepharospasm
HP:0000646Amblyopia
HP:0000659Peters anomaly
HP:0001087Developmental glaucoma
HP:0001089Iris atrophy
HP:0001138Optic neuropathy
HP:0003593Infantile onset
HP:0007663Reduced visual acuity
HP:0007759Opacification of the corneal stroma
HP:0007765Deep anterior chamber
HP:0007854Glaucomatous visual field defect
HP:0007906Ocular hypertension
HP:0007957Corneal opacity
HP:0007994Peripheral visual field loss
HP:0008007Primary congenital glaucoma

GWAS associations

14 associations (top):

StudyTraitp-value
GCST003059_4Parkinson’s disease1.000000e-06
GCST003061_1Cutaneous malignant melanoma7.000000e-09
GCST004142_24Melanoma7.000000e-09
GCST007504_2Nevus count6.000000e-07
GCST007505_21Nevus count or cutaneous melanoma1.000000e-10
GCST007713_1Frontal fibrosing alopecia2.000000e-11
GCST008870_48Keratinocyte cancer (MTAG)5.000000e-12
GCST008871_37Basal cell carcinoma3.000000e-13
GCST009238_1Asthma (time to childhood onset) x early life tobacco smoke interaction4.000000e-06
GCST009391_1309Metabolite levels8.000000e-06
GCST010303_10Nevus count or cutaneous melanoma2.000000e-24
GCST010304_38Cutaneous malignant melanoma7.000000e-15
GCST90000654_6Central corneal thickness1.000000e-08
GCST90013410_7Basal cell carcinoma4.000000e-12

EFO canonical traits (7, from GWAS)

EFO IDTrait name
EFO:0004632nevus count
EFO:0009855frontal fibrosing alopecia
EFO:0010176keratinocyte carcinoma
EFO:0004847age at onset
EFO:0008361environmental tobacco smoke exposure measurement
EFO:0010517oxalate measurement
EFO:0005213central corneal thickness

MeSH disease descriptors (5)

DescriptorNameTree numbers
D003103ColobomaC11.250.110; C11.270.147; C16.131.384.282
D006871HydrophthalmosC11.250.480; C11.525.381.407.480; C16.131.384.480; C16.614.438
C566923Cataract, Congenital Nuclear, Autosomal Recessive 3 (supp.)
C536824Glaucoma 3, primary infantile, B (supp.)
C537884Peters anomaly (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (4): CHEMBL4523986 (PROTEIN FAMILY), CHEMBL4878 (SINGLE PROTEIN), CHEMBL6066041 (PROTEIN-PROTEIN INTERACTION), CHEMBL6066132 (PROTEIN-PROTEIN INTERACTION)

Molecules with ChEMBL bioactivity

22 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 758,169 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL477772PAZOPANIB415,540
CHEMBL1095777INDACATEROL42,735
CHEMBL135ESTRADIOL4123,080
CHEMBL190461CANNABIDIOL426,379
CHEMBL295124BERBERINE426,682
CHEMBL45MELATONIN456,417
CHEMBL532ERYTHROMYCIN4141,173
CHEMBL723CARVEDILOL430,225
CHEMBL165RESVERATROL360,144
CHEMBL24171BERGAPTEN33,967
CHEMBL50QUERCETIN374,559
CHEMBL74415CANNABINOL318,794
CHEMBL151LUTEOLIN223,523
CHEMBL242341FORMONONETIN28,420
CHEMBL275638FLAVONE288,985
CHEMBL2996132-METHOXYESTRADIOL213,643
CHEMBL399910PINOCEMBRIN2163
CHEMBL44746KHELLIN230,610
CHEMBL8260BAICALEIN28,592
CHEMBL83527PTEROSTILBENE24,538
CHEMBL150KAEMPFEROL1
CHEMBL295316PLUMBAGIN1

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

5 annotations.

VariantTypeLevelDrugsPhenotypes
rs10012Efficacy3risperidoneSchizophrenia
rs1056827Efficacy3risperidoneSchizophrenia
rs1056836Efficacy3cyclophosphamide;epirubicin;fluorouracilBreast Neoplasms
rs1056836Toxicity3cyclophosphamide;epirubicin;paclitaxelBreast Neoplasms
rs1056836Toxicity3cyclophosphamide;doxorubicin;fluorouracilBreast Neoplasms

PharmGKB variants

6 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs10012CYP1B130.001risperidone
rs1056827CYP1B130.001risperidone
rs1056836CYP1B132.503cyclophosphamide;doxorubicin;fluorouracil;cyclophosphamide;epirubicin;paclitaxel;cyclophosphamide;epirubicin;fluorouracil
rs1800440CYP1B10.000
rs162561CYP1B10.000
rs1056837CYP1B10.000

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — CYP1 family

Most potent curated ligand interactions (10 total), top 10:

LigandActionAffinityParameter
2,3’,4,5’-TetramethoxystilbeneInhibition8.22pIC50
acacetinInhibition8.15pKi
diosmetinInhibition7.8pKi
chrysinInhibition7.8pKi
quercetinInhibition7.64pKi
5H3’FPEInhibition7.62pIC50
myricetinInhibition7.57pKi
eupatorinInhibition7.46pKi
berberineInhibition7.36pKi
apigeninInhibition7.19pKi

Binding affinities (BindingDB)

2 measured of 6 human assays (7 total across all organisms); most potent 2 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValue
(E)-5-(2-phenylethenyl)-1,3-benzenediolKI74.3 nM
Stilbene, 8fKI323 nM

ChEMBL bioactivities

803 potent at pChembl≥5 of 834 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
10.70IC500.02nMCHEMBL5560596
10.70IC500.02nMCHEMBL5557701
10.70IC500.02nMCHEMBL6191896
10.66Ki0.02171nMCHEMBL5575235
10.40IC500.04nMCHEMBL5575235
10.37IC500.043nMCHEMBL3421639
10.30IC500.05nMCHEMBL6192715
10.15IC500.07nMCHEMBL4749123
10.05IC500.09nMCHEMBL5279681
9.85IC500.14nMCHEMBL4798651
9.82IC500.15nMCHEMBL5561280
9.70IC500.2nMCHEMBL3422338
9.70IC500.2nMCHEMBL3422258
9.70IC500.2nMCHEMBL3422257
9.70IC500.2nMCHEMBL5394220
9.68IC500.21nMCHEMBL5570915
9.62IC500.24nMCHEMBL5561334
9.59IC500.26nMCHEMBL6189379
9.54IC500.29nMCHEMBL6190390
9.52IC500.3nMCHEMBL3422349
9.52IC500.3nMCHEMBL3422337
9.52IC500.3nMCHEMBL3422335
9.52IC500.3nMCHEMBL4759410
9.51IC500.31nMCHEMBL5403545
9.42IC500.38nMCHEMBL4799247
9.41IC500.39nMCHEMBL5568815
9.40IC500.4nMCHEMBL4748722
9.40IC500.4nMCHEMBL6188717
9.34IC500.46nMCHEMBL4782753
9.33IC500.47nMCHEMBL5575235
9.33IC500.47nMCHEMBL6191657
9.33IC500.47nMCHEMBL6191055
9.31IC500.49nMCHEMBL368236
9.31IC500.49nMCHEMBL5555246
9.31IC500.49nMCHEMBL6188712
9.28IC500.52nMCHEMBL4064195
9.28IC500.53nMCHEMBL6190011
9.26IC500.551nMCHEMBL5287897
9.24IC500.57nMALPHA-NAPHTHOFLAVONE
9.22IC500.6nMCHEMBL3422338
9.22IC500.6nMCHEMBL4755282
9.17IC500.67nMCHEMBL5422312
9.10IC500.8nMCHEMBL3422350
9.08IC500.84nMCHEMBL4798694
9.08IC500.83nMCHEMBL6188570
9.06IC500.87nMCHEMBL4747913
9.06IC500.88nMCHEMBL6191455
9.05IC500.9nMCHEMBL6189629
9.03IC500.93nMCHEMBL4799346
9.03IC500.93nMCHEMBL6190275

PubChem BioAssay actives

703 with measured affinity, of 1947 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
2-(3-fluorophenyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assayic50<0.0001uM
5-[(E)-2-(4-methoxyphenyl)ethenyl]-4,6-bis(3-methylbut-2-enyl)benzene-1,3-diol2022034: Inhibition of recombinant human CYP1B1 using 7-ethyl-0-resorufin as substrate incubated for 30 mins in presence of NADPHic50<0.0001uM
N-ethyl-2-(4-iodophenyl)quinazolin-4-amine;hydrochloride2082559: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate preincubated with enzyme for 5 mins followed by fluorescent substrate and NADPH addition and measured after 35 mins by EROD assayic50<0.0001uM
6-bromo-2-(pyrimidin-5-ylmethyl)benzo[de]isoquinoline-1,3-dione2108194: Inhibition of recombinant human CYP1B1 using 7-ER as substrate in presence of NADPH by fluorescence based assayic50<0.0001uM
2-(4-iodophenyl)quinazolin-4-amine;hydrochloride2082559: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate preincubated with enzyme for 5 mins followed by fluorescent substrate and NADPH addition and measured after 35 mins by EROD assayic50<0.0001uM
2-(4-iodophenyl)quinazolin-4-amine2082559: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate preincubated with enzyme for 5 mins followed by fluorescent substrate and NADPH addition and measured after 35 mins by EROD assayic50<0.0001uM
2-(5-fluoro-2-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0001uM
2-(5-chloro-2-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0001uM
N-(4-imidazol-1-ylphenyl)-4-(1,3-thiazol-2-yl)-1,3-thiazol-2-amine1936828: Inhibition of recombinant human CYP1B1 using 7-ethyl-0-resorufin as substrate incubated for 30 mins in presence of NADPH by EROD assayic500.0001uM
N-(2-fluoroethyl)-2-(4-iodophenyl)quinazolin-4-amine;hydrochloride2082559: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate preincubated with enzyme for 5 mins followed by fluorescent substrate and NADPH addition and measured after 35 mins by EROD assayic500.0001uM
6,7,10-trimethoxy-2-phenylbenzo[h]chromen-4-one1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assayic500.0002uM
2-(2-fluorophenyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assayic500.0002uM
2-(4-chlorophenyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assayic500.0002uM
4-[2-(2,4-dimethoxyphenyl)-1,3-thiazol-4-yl]benzonitrile1973303: Inhibition of CYP1B1 (unknown origin) expressed in HEK293-T-REx cells co-expressing POR incubated for 1 hr by resorufin dye based plate reader analysisic500.0002uM
6-bromo-2-(1H-pyrazol-4-ylmethyl)benzo[de]isoquinoline-1,3-dione2108194: Inhibition of recombinant human CYP1B1 using 7-ER as substrate in presence of NADPH by fluorescence based assayic500.0002uM
N-(2-fluoroethyl)-2-(4-iodophenyl)quinazolin-4-amine2082559: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate preincubated with enzyme for 5 mins followed by fluorescent substrate and NADPH addition and measured after 35 mins by EROD assayic500.0002uM
2-(4-fluorophenyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assayic500.0003uM
2-(3-chlorophenyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assayic500.0003uM
2-(3-fluorophenyl)-3-hydroxy-6,7,10-trimethoxybenzo[h]chromen-4-one1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assayic500.0003uM
2-(6-chloro-2-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0003uM
4-[(E)-2-(2,4-dimethoxyphenyl)ethenyl]pyridine1973303: Inhibition of CYP1B1 (unknown origin) expressed in HEK293-T-REx cells co-expressing POR incubated for 1 hr by resorufin dye based plate reader analysisic500.0003uM
6,7,10-trimethoxy-2-[4-(2H-triazol-4-yl)phenyl]benzo[h]chromen-4-one1688847: Inhibition of recombinant human CYP1B1 expressed in baculovirus infected insect cells using 7-ethoxyresorufin as substrate preincubated for 5 mins followed by NADPH addition and measured after 15 mins by EROD assayic500.0004uM
2-(6-fluoro-2-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0004uM
6-bromo-2-(1H-pyrrol-2-ylmethyl)benzo[de]isoquinoline-1,3-dione2108194: Inhibition of recombinant human CYP1B1 using 7-ER as substrate in presence of NADPH by fluorescence based assayic500.0004uM
2-(3-chlorophenyl)benzo[h]chromen-4-one1581700: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate in presence of glucose-6-phosphate, glucose-6-phosphate dehydrogenase and NADPH-generating system incubated for 35 mins by fluorometryic500.0005uM
2-[3-(trifluoromethyl)phenyl]benzo[h]chromen-4-one1581700: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate in presence of glucose-6-phosphate, glucose-6-phosphate dehydrogenase and NADPH-generating system incubated for 35 mins by fluorometryic500.0005uM
2-(2-bromo-4-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0005uM
2-(4-bromophenyl)quinazolin-4-amine;hydrochloride2082559: Inhibition of human recombinant CYP1B1 using 7-ethoxyresorufin as substrate preincubated with enzyme for 5 mins followed by fluorescent substrate and NADPH addition and measured after 35 mins by EROD assayic500.0005uM
2-phenylbenzo[h]chromen-4-one2108194: Inhibition of recombinant human CYP1B1 using 7-ER as substrate in presence of NADPH by fluorescence based assayic500.0006uM
6,7,10-trimethoxy-2-pyridin-2-ylbenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0006uM
N-(3-fluorophenyl)-4-(4-pyridin-3-yl-1,3-thiazol-2-yl)-1,3-thiazol-2-amine1936828: Inhibition of recombinant human CYP1B1 using 7-ethyl-0-resorufin as substrate incubated for 30 mins in presence of NADPH by EROD assayic500.0006uM
2-[3-[2-[2-[2-(2-aminoethoxy)ethoxy]ethoxy]ethoxy]-5-fluorophenyl]-6,7,10-trimethoxybenzo[h]chromen-4-one2023818: Inhibition of recombinant CYP1B1 (unknown origin) using 7-ethoxyresorufin as substrate preincubated for 5 mins followed by NADPH addition incubated for 35 mins by EROD assayic500.0007uM
2-(4-fluorophenyl)-3-hydroxy-6,7,10-trimethoxybenzo[h]chromen-4-one1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assayic500.0008uM
2-(4-chloro-2-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0008uM
2-(1H-indol-6-yl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0009uM
2-(1-benzofuran-2-yl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0009uM
2-(2-fluoro-4-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0009uM
6,7,10-trimethoxy-2-quinolin-2-ylbenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0010uM
2,4-bis(2,4-dimethoxyphenyl)-1,3-thiazole1973303: Inhibition of CYP1B1 (unknown origin) expressed in HEK293-T-REx cells co-expressing POR incubated for 1 hr by resorufin dye based plate reader analysisic500.0010uM
2-(6-amino-3-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0010uM
2-(5-fluoro-3-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0010uM
6,7,10-trimethoxy-2-pyridin-3-ylbenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0010uM
2-(2-chlorophenyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assayic500.0011uM
6,7,10-trimethoxy-2-(4-methoxyphenyl)benzo[h]chromen-4-one1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assayic500.0011uM
2-(5-bromo-3-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0011uM
2-(2-chloro-4-pyridinyl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0011uM
2-(2-fluorophenyl)-3-hydroxy-6,7,10-trimethoxybenzo[h]chromen-4-one1203556: Inhibition of human CYP1B1 assessed as reduction in 7-ethoxyresorufin O-deethylation activity by fluorescence based EROD assayic500.0012uM
6,7,10-trimethoxy-2-pyridin-4-ylbenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0012uM
2-(furan-2-yl)-6,7,10-trimethoxybenzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0012uM
6,7,10-trimethoxy-2-(6-methyl-2-pyridinyl)benzo[h]chromen-4-one1727620: Inhibition of recombinant human CYP1B1 using 7-ethoxyresorufin as substrate after 35 mins in presence of NADP+ by EROD assayic500.0012uM

CTD chemical–gene interactions

563 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Tetrachlorodibenzodioxinaffects binding, increases reaction, increases activity, affects reaction, affects expression (+6 more)142
Benzo(a)pyreneincreases activity, affects metabolic processing, increases expression, increases reaction, decreases reaction (+13 more)90
Estradiolincreases reaction, affects reaction, affects metabolic processing, increases chemical synthesis, affects cotreatment (+9 more)29
Particulate Matterdecreases reaction, increases expression, increases reaction, increases abundance, affects cotreatment (+2 more)27
Tobacco Smoke Pollutiondecreases reaction, affects expression, increases methylation, increases expression, increases reaction (+2 more)19
Resveratrolaffects expression, affects binding, decreases activity, increases activity, increases expression (+6 more)18
Vehicle Emissionsaffects expression, increases reaction, increases abundance, decreases reaction, increases expression (+2 more)14
alpha-naphthoflavonedecreases activity, decreases reaction, increases expression, affects cotreatment, increases metabolic processing (+2 more)11
benz(a)anthraceneaffects cotreatment, decreases reaction, increases expression, affects reaction11
beta-Naphthoflavoneaffects binding, decreases activity, increases expression11
3,4,5,3’,4’-pentachlorobiphenyldecreases reaction, increases expression, affects expression, affects cotreatment, decreases expression (+1 more)10
2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amidedecreases reaction, increases expression, affects cotreatment, decreases expression10
Methylcholanthreneaffects binding, increases reaction, increases expression, increases activity10
sodium arseniteincreases expression, affects methylation, decreases expression, affects cotreatment, increases abundance9
2,4,3’,5’-tetramethoxystilbeneincreases expression, increases hydroxylation, increases metabolic processing, affects cotreatment, affects binding (+3 more)9
9,10-Dimethyl-1,2-benzanthraceneincreases activity, increases chemical synthesis, increases reaction, decreases reaction, increases expression (+1 more)9
bisphenol Aaffects expression, decreases expression, affects localization, increases expression, increases reaction7
trichostatin Aaffects cotreatment, increases expression, decreases reaction, affects expression, increases reaction7
chryseneaffects cotreatment, decreases reaction, increases expression7
phenanthrenedecreases activity, increases activity, increases metabolic processing, increases abundance, decreases metabolic processing (+4 more)7
3’,4’-dimethoxyflavonedecreases reaction, increases activity, increases expression, decreases expression, affects binding (+1 more)7
Polycyclic Aromatic Hydrocarbonsaffects metabolic processing, affects cotreatment, increases abundance, increases expression, decreases expression7
Quercetinaffects binding, decreases activity, decreases expression, increases expression7
Valproic Acidaffects cotreatment, increases expression, decreases expression7
benzo(k)fluorantheneaffects cotreatment, affects reaction, increases hydroxylation, increases expression6
pyreneincreases hydroxylation, affects cotreatment, increases expression, affects binding, decreases activity (+2 more)6
2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridinedecreases expression, increases activity, increases metabolic processing, increases chemical synthesis, decreases reaction (+3 more)6
6-formylindolo(3,2-b)carbazoleaffects binding, increases reaction, increases expression, decreases reaction6
Fulvestrantaffects cotreatment, decreases methylation, affects methylation, decreases reaction, increases expression (+2 more)6
Air Pollutantsaffects response to substance, increases abundance, increases expression6

ChEMBL screening assays

408 unique, capped per target: 281 admet, 127 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL2060324ADMETInhibition of CYP450Rapid identification of ETP-46992, orally bioavailable PI3K inhibitor, selective versus mTOR. — Bioorg Med Chem Lett
CHEMBL4614611BindingDrug metabolism in human liver microsomes assessed as Cytochrome P450-mediated formation of 12-OHNVP by measuring Kcat/Km ratio in presence of NADPH regenerating reagents by uHPLC-MS/MS analysisTwelfth-Position Deuteration of Nevirapine Reduces 12-Hydroxy-Nevirapine Formation and Nevirapine-Induced Hepatocyte Death. — J Med Chem

Cellosaurus cell lines

6 cell lines: 3 cancer cell line, 1 spontaneously immortalized cell line, 1 transformed cell line, 1 induced pluripotent stem cell

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B1EZAbcam A-549 CYP1B1 KO 1Cancer cell lineMale
CVCL_B5WPV79MZh1B1Spontaneously immortalized cell lineMale
CVCL_B9CPAbcam A-549 CYP1B1 KO 2Cancer cell lineMale
CVCL_C7JTAHH-1 TK+/- h1B1/ORTransformed cell lineMale
CVCL_D1S3Abcam U-87MG CYP1B1 KOCancer cell lineMale
CVCL_VD53ESi047-AInduced pluripotent stem cellMale

Clinical trials (associated diseases)

30 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT07396441PHASE4RECRUITINGSupplementary Kelulut Honey Therapy in Juvenile Open-Angle Glaucoma: Effects on IL-6, RNFL and Dry Eye
NCT04947124PHASE2COMPLETEDA Study to Determine the Safety and Tolerability of 2 Concentrations of QLS-101
NCT01460017PHASE1UNKNOWNComparison Between Deep Sclerectomy and Traditional Trabeculotomy & Trabeculectomy in Congenital Glaucoma
NCT02121171PHASE1UNKNOWNCombined Trab+Trab Versus Combined Trab+Trab With Subconjunctival Implantation of Ologen for Primary Congenital Glaucoma
NCT01793168Not specifiedRECRUITINGRare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford
NCT01020721Not specifiedUNKNOWNThe Genetic Characteristics in South Korean Patients With Primary Congenital Glaucoma
NCT01136460Not specifiedUNKNOWNGenetic Testing in Primary Congenital Glaucoma Patients
NCT02945176Not specifiedCOMPLETEDSafety and Performance Study of the ARGOS-IO System in Patients Undergoing Boston Keratoprosthesis Implantation
NCT03077789Not specifiedCOMPLETEDProspective Study of the Diagnostic and Therapeutic Management of Congenital Glaucoma in France
NCT03541551Not specifiedCOMPLETEDOlogen® Collagen Matrix in Patients With Primary Congenital Glaucoma Undergoing Trabeculectomy
NCT04079725Not specifiedUNKNOWNIris Tissue in Primary Congenital Glaucoma
NCT04116450Not specifiedCOMPLETEDMicrocatheterTrabeculotomy in Primary Congenital Glaucoma
NCT04381611Not specifiedENROLLING_BY_INVITATIONINTEGRAL Study: A Longitudinal Study of Surgeries and Lasers in Glaucoma: Long-term Results and Success Predictors Analysed From a Large-scale Retrospective and Prospective Glaucoma Register
NCT04647929Not specifiedWITHDRAWNComparison of Surgical Treatment Options for Primary Congenital and Developmental Glaucomas
NCT04683289Not specifiedCOMPLETEDVisco-Circumferential-Suture-Trabeculotomy Versus Trabeculotomy
NCT04709497Not specifiedUNKNOWNSurgery for Primary Congenital Glaucoma in Neonates
NCT04949555Not specifiedUNKNOWNLong Term Evaluation of Primary Congenital Glaucoma Management in Sohag University Hospital
NCT05011747Not specifiedUNKNOWNViscotrabeculotomy in Pediatric Glaucoma Following Cataract Surgery
NCT05115708Not specifiedUNKNOWNKahook Dual Blade Ab-interno Trabeculotomy Versus ab Externo Viscotrabeculotomy in Primary Congenital Glaucoma
NCT05205122Not specifiedUNKNOWNEvaluation of Primary Congenital Glaucoma at Asyut University Hospital
NCT05943184Not specifiedCOMPLETEDCognitive Behavioral Nursing Model
NCT06189326Not specifiedUNKNOWNNon-penetrating Deep Sclerectomy Versus Trabeculotomy- Trabeculectomy Operation in Treatment of Primary Congenital Glaucoma
NCT07012252Not specifiedCOMPLETEDOptical Coherence Tomography of the Irido-Corneal Angle Before and After Goniotomy and Trabeculotomy in Primary Congenital Glaucoma
NCT07504315Not specifiedNOT_YET_RECRUITINGStudy Aim to Compare the Effect of Different Technique of Airway Managment During Anaesthesia on the Haemodynamics and Intraocular Pressure. Patients Were Divided Into Three Groups of 25 Patients Each. (Group A); Patients Who Were Subjected to LMA Insertion (Group B ).
NCT07550868Not specifiedNOT_YET_RECRUITINGGoniotomy in Primary Congenital Glaucoma
NCT05641103Not specifiedCOMPLETEDPREDIGA 2: Spanish Acronym of Educational and Diagnostic Project for Gaucher and ASMD
NCT00368004Not specifiedTERMINATEDFamily Studies of Uveal Coloboma
NCT01778543Not specifiedRECRUITINGPathogenesis and Genetics of Microphthalmia, Anophthalmia and Uveal Coloboma (MAC)
NCT04833361Not specifiedCOMPLETEDPotential Environmental Causes of Uveal Coloboma
NCT06293560Not specifiedRECRUITINGMicrophthalmia, Anophthalmia, and Coloboma Genetic Epidemiology in Children