CYP27B1
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Also known as CYP1P450c1
Summary
CYP27B1 (cytochrome P450 family 27 subfamily B member 1, HGNC:2606) is a protein-coding gene on chromosome 12q14.1, encoding 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial (O15528). A cytochrome P450 monooxygenase involved in vitamin D metabolism and in calcium and phosphorus homeostasis.
This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. The protein encoded by this gene localizes to the inner mitochondrial membrane where it hydroxylates 25-hydroxyvitamin D3 at the 1alpha position. This reaction synthesizes 1alpha,25-dihydroxyvitamin D3, the active form of vitamin D3, which binds to the vitamin D receptor and regulates calcium metabolism. Thus this enzyme regulates the level of biologically active vitamin D and plays an important role in calcium homeostasis. Mutations in this gene can result in vitamin D-dependent rickets type I.
Source: NCBI Gene 1594 — RefSeq curated summary.
At a glance
- Gene–disease (curated): vitamin D-dependent rickets, type 1A (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 3
- Clinical variants (ClinVar): 579 total — 58 pathogenic, 37 likely-pathogenic
- Phenotypes (HPO): 68
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_000785
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2606 |
| Approved symbol | CYP27B1 |
| Name | cytochrome P450 family 27 subfamily B member 1 |
| Location | 12q14.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CYP1, P450c1 |
| Ensembl gene | ENSG00000111012 |
| Ensembl biotype | protein_coding |
| OMIM | 609506 |
| Entrez | 1594 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 5 protein_coding, 3 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000228606, ENST00000546496, ENST00000546567, ENST00000546609, ENST00000547344, ENST00000547451, ENST00000552186, ENST00000713544, ENST00000713545, ENST00000718428
RefSeq mRNA: 1 — MANE Select: NM_000785
NM_000785
CCDS: CCDS8954
Canonical transcript exons
ENST00000228606 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000838996 | 57766847 | 57767078 |
| ENSE00002378890 | 57762334 | 57763255 |
| ENSE00003479983 | 57764754 | 57764926 |
| ENSE00003502018 | 57764098 | 57764176 |
| ENSE00003686375 | 57763611 | 57763808 |
| ENSE00003694382 | 57764378 | 57764550 |
| ENSE00003704765 | 57766007 | 57766197 |
| ENSE00003786192 | 57765011 | 57765211 |
| ENSE00004020196 | 57765297 | 57765499 |
Expression profiles
Bgee: expression breadth ubiquitous, 175 present calls, max score 92.03.
FANTOM5 (CAGE): breadth broad, TPM avg 5.4209 / max 431.1545, expressed in 261 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 131760 | 5.1533 | 188 |
| 131759 | 0.0949 | 51 |
| 131758 | 0.0761 | 32 |
| 131757 | 0.0525 | 24 |
| 131756 | 0.0441 | 14 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| nephron tubule | UBERON:0001231 | 92.03 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 89.04 | gold quality |
| kidney epithelium | UBERON:0004819 | 89.02 | gold quality |
| renal glomerulus | UBERON:0000074 | 88.33 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 86.14 | gold quality |
| cortex of kidney | UBERON:0001225 | 81.46 | gold quality |
| kidney | UBERON:0002113 | 80.38 | gold quality |
| body of pancreas | UBERON:0001150 | 77.81 | gold quality |
| metanephros | UBERON:0000081 | 76.01 | gold quality |
| hair follicle | UBERON:0002073 | 75.76 | silver quality |
| right lobe of thyroid gland | UBERON:0001119 | 73.37 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 73.13 | gold quality |
| pancreas | UBERON:0001264 | 72.84 | gold quality |
| left adrenal gland | UBERON:0001234 | 72.82 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 72.82 | gold quality |
| right adrenal gland | UBERON:0001233 | 72.00 | gold quality |
| metanephros cortex | UBERON:0010533 | 71.88 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 71.50 | gold quality |
| thyroid gland | UBERON:0002046 | 71.40 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 71.16 | gold quality |
| adrenal cortex | UBERON:0001235 | 70.23 | gold quality |
| adrenal gland | UBERON:0002369 | 69.12 | gold quality |
| endometrium epithelium | UBERON:0004811 | 69.08 | gold quality |
| oocyte | CL:0000023 | 67.79 | gold quality |
| islet of Langerhans | UBERON:0000006 | 66.97 | gold quality |
| minor salivary gland | UBERON:0001830 | 66.35 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 65.64 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 64.61 | gold quality |
| skin of abdomen | UBERON:0001416 | 64.23 | gold quality |
| skin of leg | UBERON:0001511 | 63.58 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 2.18 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CEBPB, E2F1, E2F4, GFI1, NFKB1, PPARA, RELA, RXRA, THRA, THRB, VDR
miRNA regulators (miRDB)
57 targeting CYP27B1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-146A-5P | 99.96 | 68.93 | 988 |
| HSA-MIR-146B-5P | 99.96 | 69.13 | 977 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-7153-5P | 99.94 | 68.89 | 1006 |
| HSA-MIR-4271 | 99.88 | 68.32 | 2244 |
| HSA-MIR-4799-5P | 99.82 | 70.60 | 2663 |
| HSA-MIR-6505-5P | 99.73 | 69.25 | 1595 |
| HSA-MIR-4428 | 99.73 | 66.41 | 1733 |
| HSA-MIR-10393-3P | 99.72 | 66.56 | 961 |
| HSA-MIR-6801-5P | 99.72 | 66.50 | 981 |
| HSA-MIR-1200 | 99.71 | 70.42 | 1838 |
| HSA-MIR-4530 | 99.69 | 66.47 | 1509 |
| HSA-MIR-3136-3P | 99.57 | 66.59 | 781 |
| HSA-MIR-7155-3P | 99.57 | 66.48 | 794 |
| HSA-MIR-5689 | 99.50 | 71.26 | 1154 |
| HSA-MIR-4696 | 99.48 | 67.48 | 1040 |
| HSA-MIR-4688 | 99.48 | 64.68 | 828 |
| HSA-MIR-6722-3P | 99.45 | 67.62 | 1919 |
| HSA-MIR-377-3P | 99.37 | 70.18 | 1905 |
| HSA-MIR-1272 | 99.34 | 68.79 | 878 |
| HSA-MIR-4727-5P | 99.23 | 67.55 | 1154 |
| HSA-MIR-593-3P | 99.22 | 67.28 | 1327 |
| HSA-MIR-10B-3P | 99.04 | 66.98 | 988 |
| HSA-MIR-6738-3P | 99.03 | 67.14 | 1326 |
| HSA-MIR-1909-3P | 99.03 | 66.56 | 1662 |
| HSA-MIR-876-3P | 98.76 | 68.23 | 945 |
| HSA-MIR-6837-3P | 98.42 | 66.71 | 1149 |
| HSA-MIR-4436B-3P | 98.25 | 65.26 | 1494 |
Literature-anchored findings (GeneRIF, showing 40)
- CYP1alpha intron 6 polymorphism appears not to be associated with type 1 diabetes mellitus, Graves’ disease and Hashimoto’s thyroiditis. (PMID:12039697)
- Novel gene mutations in patients with 1alpha-hydroxylase deficiency that confer partial enzyme activity in vitro. (PMID:12050193)
- activity is diminished in human prostate cancer cells and is enhanced by gene transfer (PMID:12137802)
- Expression and activity of 25-hydroxyvitamin D-1 alpha-hydroxylase are restricted in cultures of human syncytiotrophoblast cells from preeclamptic pregnancies. (PMID:12161526)
- Targeted disruption of this protein in ras-transformed keratinocytes demonstrates that this locally produced protein suppresses growth and induces differentiation in an autocrine fashion. (PMID:12496369)
- Polymorphism of this gene may be associated with NIDDM in Poland. (PMID:12746631)
- demonstrated constitutive expression of 25(OH)D3-1 alpha-hydroxylase in monocyte-derived dendritic cells, which was increased after stimulation with LPS. (PMID:12855575)
- mRNA in alveolar macrophages greater in lung cancer than controls. Advanced stage of lung cancer showed highest expression, followed by early group, then controls. (PMID:14671156)
- suggests that there are some minor structural and functional differences between the wild-type VDR and the Delta165-215 deletion mutant and that Y143 residue is more important for receptor function than residue S278 (PMID:15225751)
- Down-regulation of 1alpha-hydroxylase promoter through NFkappaB signaling may contribute to the pathogenesis of inflammation-associated osteopenia/osteoporosis. (PMID:15243130)
- The CYP27B1 promoter (-1260) C/A polymorphism appears to be associated with endocrine autoimmune diseases but the CYP27B1 intron 6 (+2838) C/T polymorphism appears to be associated only with Hashimoto’s thyroiditis. (PMID:15296474)
- Increased expression of 25-hydroxyvitamin D-1alpha-hydroxylase is associated with dysgerminomas (PMID:15331405)
- 1Alpha-hydroxylase is found in both neurons and glial cells of the brain in a regional and layer-specific pattern. (PMID:15589699)
- evidence for the expression of an enzymatically active 25(OH)D3-1alpha-hydroxylase system in human VSMCs, which can be upregulated by parathyroid hormone and estrogenic compounds, an autocrine mechanism to curb changes in VSMC proliferation (PMID:15795327)
- GFI1 in prostate cancer cells acts as a repressor of 25-hydroxyvitamin D 1-alpha hydroxylase gene. (PMID:15947108)
- CYP27B1 splice variants have roles in vitamin D(3) metabolism in human glioblastoma multiforme (PMID:16061850)
- first studies to demonstrate that nontransformed human mammary cells express 25 hydroxyvitamin D3-1-alpha hydroxylase(CYP27B1), and that they are growth inhibited by physiologically relevant concentrations of 25(OH)D3 (PMID:16549446)
- Results describe the expression, localization and regulation of 1,25(OH)(2)D(3), 1alpha-hydroxylase in human cycling and early pregnant endometrium. (PMID:16720713)
- Expression, activity, and functionality of 1alpha-hydroxylase unequivocally demonstrates that vitamin D can act in an auto/paracrine manner in bone. (PMID:17023519)
- The overall data suggest that calcitriol downregulates CYP27B1 expression via a cAMP-dependent signaling pathway, whereas upregulates 24-hydroxylase gene expression through a VDR-dependent mechanism (PMID:17079137)
- expression of the 5’-flanking region for the CYP27B1 gene in osteoblast cells may be regulated differently to that previously described in kidney cells (PMID:17207990)
- growth factor independent 1 may play a significant role in the down regulation of endogenous production of 1,25D in prostate cancer cells and could provide a novel insight to future diagnosis and treatment (PMID:17207994)
- CYP27B1 gene could play a functional role in the pathogenesis of type 1 diabetes through modulation of its mRNA expression and influence serum levels of 1,25(OH)(2)D(3) via the -1260 C/A polymorphism (PMID:17223345)
- modulation of the 25 hydroxyvitamin D(3)-1alpha-hydroxylase opens up a new target for vitamin D(3) related therapies in endometrial cancer (PMID:17236759)
- local 1,25D synthesis has paracrine effects in the bone microenvironment implying that vitamin D metabolism in human osteoblasts represents a physiologically important pathway (PMID:17254772)
- confirm a crucial role for STAT1alpha as well as for C/EBPbeta in the regulation of 1alpha-hydroxylase in monocytes (PMID:17267208)
- abundance of less active 1alpha-hydroxylase protein variants can alter the local synthesis of calcitriol in the cells and may explain variations of enzymatic activity in different cells and tissues (PMID:17287116)
- local synthesis of 1,25(OH)(2)D(3) may be a preferred mode of response to antigenic challenge in many tissues (PMID:17368179)
- Evidence is presented for autocrine and paracrine activities of CYP27B1. (PMID:17395559)
- Data indicate that noncoding splice variants of CYP27b1 are functionally active and may play a significant role in the regulation of 1,25(OH)2D3 synthesis during normal physiology. (PMID:17395703)
- The identification of two new vitamin D response element-binding regions in the distal promoter that bind vitamin D receptor-retinoid X receptor complexes. (PMID:17426122)
- 4 novel & 4 known mutations were identified in patients with 1alpha-hydroxylase deficiency; new mutations included a nonsense mutation in exon 6; deletion of adenine in exon 9 ; substitution of thymine for cytosine in exon 2; & a splice site mutation (PMID:17488797)
- Common inherited variation in the vitamin D metabolism such as mutation in CYP27B1 affect susceptibility to type 1 diabetes. (PMID:17606874)
- Seveeral splice variants are identified in breast cancer cell lines and malignant cells ma contain inactive variants. (PMID:17878529)
- Association between polymorphisms across the entire vitamin D receptor (VDR) gene and genes encoding for vitamin D activating enzyme 1-alpha-hydroxylase (CYP27B1) and deactivating enzyme 24-hyroxylase (CYP24A1) and prostate cancer risk. (PMID:17932346)
- Significant associations of 2 CYP27B1 SNP variants and 25(OH)D concentrations were observed. The findings indicate important genetic influences on regulation of seasonal circulating 25(OH)D concentrations in MS twins. (PMID:18689381)
- Oncogenic transformation of mammary epithelial cellS was associated with reduced 1alpha,25(OH)2D3 synthesis, and reduced mRNA and protein levels of VDR and CYP27b1 (PMID:18767073)
- CYP27B1 does not commonly serve as a classical tumor suppressor gene in the development of sporadic parathyroid adenomas or of refractory secondary/tertiary hyperparathyroidism (PMID:18767934)
- No evidence that CYP27B1 polymorphisms were associated with mammographic breast density among Caucasian premenopausal women of French descent. (PMID:18768522)
- Single nucleotide polymorphisms may be associated with risk of prostate cancer in men with low vitamin D status. (PMID:19255064)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cyp27b1 | ENSDARG00000045015 |
| mus_musculus | Cyp27b1 | ENSMUSG00000006724 |
| rattus_norvegicus | Cyp27b1 | ENSRNOG00000046214 |
| drosophila_melanogaster | sad | FBGN0003312 |
Paralogs (3): CYP24A1 (ENSG00000019186), CYP27A1 (ENSG00000135929), CYP27C1 (ENSG00000186684)
Protein
Protein identifiers
25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial — O15528 (reviewed: O15528)
Alternative names: 25-OHD-1 alpha-hydroxylase, 25-hydroxyvitamin D(3) 1-alpha-hydroxylase, Calcidiol 1-monooxygenase, Cytochrome P450 subfamily XXVIIB polypeptide 1, Cytochrome P450C1 alpha, Cytochrome P450VD1-alpha, Cytochrome p450 27B1
All UniProt accessions (3): A0AAA9YHN9, A0AAA9YHZ6, O15528
UniProt curated annotations — full annotation on UniProt →
Function. A cytochrome P450 monooxygenase involved in vitamin D metabolism and in calcium and phosphorus homeostasis. Catalyzes the rate-limiting step in the activation of vitamin D in the kidney, namely the hydroxylation of 25-hydroxyvitamin D3/calcidiol at the C1alpha-position to form the hormonally active form of vitamin D3, 1alpha,25-dihydroxyvitamin D3/calcitriol that acts via the vitamin D receptor (VDR). Has 1alpha-hydroxylase activity on vitamin D intermediates of the CYP24A1-mediated inactivation pathway. Converts 24R,25-dihydroxyvitamin D3/secalciferol to 1-alpha,24,25-trihydroxyvitamin D3, an active ligand of VDR. Also active on 25-hydroxyvitamin D2. Mechanistically, uses molecular oxygen inserting one oxygen atom into a substrate, and reducing the second into a water molecule, with two electrons provided by NADPH via FDXR/adrenodoxin reductase and FDX1/adrenodoxin.
Subcellular location. Mitochondrion membrane.
Tissue specificity. Kidney.
Disease relevance. Rickets vitamin D-dependent 1A (VDDR1A) [MIM:264700] A disorder caused by a selective deficiency of the active form of vitamin D (1,25-dihydroxyvitamin D3) and resulting in defective bone mineralization and clinical features of rickets. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Activated by cardiolipin and dioleoyl phosphatidylethanolamine (DOPE), phospholipids found in the inner mitochondrial membrane. Inhibited by high substrate concentration.
Pathway. Hormone biosynthesis; vitamin D biosynthesis.
Similarity. Belongs to the cytochrome P450 family.
RefSeq proteins (1): NP_000776* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001128 | Cyt_P450 | Family |
| IPR002401 | Cyt_P450_E_grp-I | Family |
| IPR017972 | Cyt_P450_CS | Conserved_site |
| IPR036396 | Cyt_P450_sf | Homologous_superfamily |
| IPR050479 | CYP11_CYP27_families | Family |
Pfam: PF00067
Enzyme classification (BRENDA):
- EC 1.14.15.18 — calcidiol 1-monooxygenase (BRENDA: 12 organisms, 56 substrates, 56 inhibitors, 26 Km, 14 kcat entries)
Substrate kinetics (BRENDA)
9 substrates with measured Km, best-characterized 9. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| 25-HYDROXYCHOLECALCIFEROL | 0.0001–0.89 | 8 |
| 25-HYDROXYVITAMIN D | 0.0001–0.0005 | 5 |
| (24R),25-DIHYDROXYCHOLECALCIFEROL | 0.0011 | 2 |
| 1ALPHA-HYDROXYVITAMIN D | 0.0005–0.0007 | 2 |
| 25-HYDROXYVITAMIN D2 | 4.6–4.8 | 2 |
| 25-HYDROXYVITAMIN D3 | 5.9–9.7 | 2 |
| (24R),25-DIHYDROXYVITAMIN D3 | 26 | 1 |
| 20-HYDROXYVITAMIN D3 | 49 | 1 |
| 24,25-DIHYDROXYCHOLECALCIFEROL | 0.0013 | 1 |
Catalyzed reactions (Rhea), 4 shown:
- calcidiol + 2 reduced [adrenodoxin] + O2 + 2 H(+) = calcitriol + 2 oxidized [adrenodoxin] + H2O (RHEA:20573)
- 25-hydroxyvitamin D2 + 2 reduced [adrenodoxin] + O2 + 2 H(+) = 1alpha,25-dihydroxyvitamin D2 + 2 oxidized [adrenodoxin] + H2O (RHEA:49048)
- secalciferol + 2 reduced [adrenodoxin] + O2 + 2 H(+) = calcitetrol + 2 oxidized [adrenodoxin] + H2O (RHEA:49064)
- 25-hydroxy-24-oxocalciol + 2 reduced [adrenodoxin] + O2 + 2 H(+) = (1S)-1,25-dihydroxy-24-oxocalciol + 2 oxidized [adrenodoxin] + H2O (RHEA:49068)
UniProt features (23 total): sequence variant 19, transit peptide 1, chain 1, binding site 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O15528-F1 | 86.75 | 0.70 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (1): 455 (axial binding residue)
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-196791 | Vitamin D (calciferol) metabolism |
| R-HSA-211916 | Vitamins |
| R-HSA-5579014 | Defective CYP27B1 causes VDDR1A |
MSigDB gene sets: 427 (showing top):
GOBP_POSITIVE_REGULATION_OF_EPITHELIAL_CELL_DIFFERENTIATION, GOBP_EPITHELIUM_DEVELOPMENT, REACTOME_BIOLOGICAL_OXIDATIONS, BENPORATH_ES_WITH_H3K27ME3, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_PAIRED_DONORS_WITH_INCORPORATION_OR_REDUCTION_OF_MOLECULAR_OXYGEN, GOBP_POSITIVE_REGULATION_OF_KERATINOCYTE_DIFFERENTIATION, GOBP_RESPONSE_TO_PEPTIDE, GOBP_CELLULAR_RESPONSE_TO_LIPID, GOBP_REGULATION_OF_EPIDERMIS_DEVELOPMENT, SHEPARD_CRASH_AND_BURN_MUTANT_UP, MODULE_522, GOBP_NEGATIVE_REGULATION_OF_CELL_GROWTH, GOBP_POLYOL_METABOLIC_PROCESS, GOBP_GROWTH, SCHLESINGER_METHYLATED_DE_NOVO_IN_CANCER
GO Biological Process (25): vitamin metabolic process (GO:0006766), calcium ion transport (GO:0006816), negative regulation of cell population proliferation (GO:0008285), bone mineralization (GO:0030282), negative regulation of cell growth (GO:0030308), regulation of bone mineralization (GO:0030500), response to lipopolysaccharide (GO:0032496), response to vitamin D (GO:0033280), response to type II interferon (GO:0034341), calcitriol biosynthetic process from calciol (GO:0036378), vitamin D metabolic process (GO:0042359), vitamin D catabolic process (GO:0042369), response to estrogen (GO:0043627), positive regulation of keratinocyte differentiation (GO:0045618), decidualization (GO:0046697), calcium ion homeostasis (GO:0055074), G1 to G0 transition (GO:0070314), positive regulation of vitamin D receptor signaling pathway (GO:0070564), cellular response to vitamin D (GO:0071305), alcohol metabolic process (GO:0006066), lipid metabolic process (GO:0006629), lipid biosynthetic process (GO:0008610), vitamin D biosynthetic process (GO:0042368), small molecule metabolic process (GO:0044281), small molecule biosynthetic process (GO:0044283)
GO Molecular Function (8): calcidiol 1-monooxygenase activity (GO:0004498), iron ion binding (GO:0005506), heme binding (GO:0020037), secalciferol 1-monooxygenase activity (GO:0062185), monooxygenase activity (GO:0004497), oxidoreductase activity (GO:0016491), oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), metal ion binding (GO:0046872)
GO Cellular Component (5): cytoplasm (GO:0005737), mitochondrion (GO:0005739), mitochondrial outer membrane (GO:0005741), membrane (GO:0016020), mitochondrial membrane (GO:0031966)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Metabolism of steroids | 1 |
| Cytochrome P450 - arranged by substrate type | 1 |
| Metabolic disorders of biological oxidation enzymes | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| small molecule metabolic process | 2 |
| negative regulation of cellular process | 2 |
| response to lipid | 2 |
| response to oxygen-containing compound | 2 |
| oxidoreductase activity | 2 |
| cellular anatomical structure | 2 |
| metal ion transport | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| ossification | 1 |
| biomineral tissue development | 1 |
| regulation of cell growth | 1 |
| cell growth | 1 |
| negative regulation of growth | 1 |
| regulation of ossification | 1 |
| bone mineralization | 1 |
| regulation of biomineral tissue development | 1 |
| response to molecule of bacterial origin | 1 |
| response to vitamin | 1 |
| response to cytokine | 1 |
| innate immune response | 1 |
| vitamin D biosynthetic process | 1 |
| polyol biosynthetic process | 1 |
| vitamin D3 metabolic process | 1 |
| steroid metabolic process | 1 |
| steroid catabolic process | 1 |
| vitamin D metabolic process | 1 |
| fat-soluble vitamin catabolic process | 1 |
| response to hormone | 1 |
| keratinocyte differentiation | 1 |
| positive regulation of epidermal cell differentiation | 1 |
| regulation of keratinocyte differentiation | 1 |
| positive regulation of multicellular organismal process | 1 |
| maternal placenta development | 1 |
| developmental process involved in reproduction | 1 |
| tissue development | 1 |
| monoatomic cation homeostasis | 1 |
| inorganic ion homeostasis | 1 |
| cell cycle process | 1 |
| vitamin D receptor signaling pathway | 1 |
Protein interactions and networks
STRING
2167 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CYP27B1 | PTH | P01270 | 940 |
| CYP27B1 | FGF23 | Q9GZV9 | 906 |
| CYP27B1 | GC | P02774 | 856 |
| CYP27B1 | SLC34A1 | Q06495 | 815 |
| CYP27B1 | PHEX | P78562 | 802 |
| CYP27B1 | PPIF | P30405 | 787 |
| CYP27B1 | PPIG | Q13427 | 755 |
| CYP27B1 | CAMP | P49913 | 721 |
| CYP27B1 | SLC34A3 | Q8N130 | 719 |
| CYP27B1 | KL | Q9UEF7 | 696 |
| CYP27B1 | DHCR7 | Q9UBM7 | 678 |
| CYP27B1 | TLR2 | O60603 | 671 |
| CYP27B1 | METTL1 | Q9UBP6 | 667 |
| CYP27B1 | PIAS1 | O75925 | 651 |
| CYP27B1 | MBD4 | O95243 | 651 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CYP27B1 | PSMG3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| P | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (3): CYP27B1 (Affinity Capture-RNA), PSMG3 (Affinity Capture-MS), CYP27B1 (Affinity Capture-RNA)
ESM2 similar proteins: B2RXA7, E1BHJ4, F1RE08, G3V7X8, I1GQE7, O02766, O15528, O35084, O35132, O43174, O55127, O88962, O93323, P00191, P03940, P08686, P0DOX0, P12394, P15540, P30437, P51871, P70085, P98187, Q07973, Q08D50, Q09128, Q16678, Q2LA59, Q2LA60, Q2LCM1, Q3MID2, Q4G0S4, Q5VRM7, Q60991, Q64429, Q64441, Q64562, Q64678, Q6EIG3, Q6V0L0
Diamond homologs: A0A068A9T2, A0A068AA98, A0A068ACU3, A0A084API1, A0A0F7U0K0, A0A0P0ZEA9, A0A166YZR3, A0A1B4XBH0, A0A1L7VEQ6, A0A1L9WQK2, A0A1R3RGJ7, A0A1V1FNM9, A0A2P1DPA5, A0A3S9NM20, A0A411KUQ5, A0A455ZIK8, A0A481WPJ6, A0A831A9C9, A0A8K1AW54, A1C8C2, A1DA63, A2R6G9, B6HFX9, B8NHD9, B8NM64, B8QHP1, B9WZX4, C8V7P3, C8VJR0, D1MX85, E9KMQ3, G0KYB2, G1XU01, G3Y420, I1RL13, K2RLM2, L0E2R0, L0N063, M2UJ60, M2V933
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| GFI1 | “down-regulates quantity by repression” | CYP27B1 | “transcriptional regulation” |
| CYP27B1 | “up-regulates quantity” | calcitriol | “chemical modification” |
| CYP27B1 | “down-regulates quantity” | calcidiol | “chemical modification” |
| PTH1R | “up-regulates quantity” | CYP27B1 | |
| MBD4 | “up-regulates quantity by expression” | CYP27B1 | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
579 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 58 |
| Likely pathogenic | 37 |
| Uncertain significance | 178 |
| Likely benign | 264 |
| Benign | 7 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1069143 | NM_000785.4(CYP27B1):c.160_161dup (p.Lys55fs) | Pathogenic |
| 1072027 | NM_000785.4(CYP27B1):c.1290_1294dup (p.Arg432fs) | Pathogenic |
| 1074854 | NM_000785.4(CYP27B1):c.51G>A (p.Trp17Ter) | Pathogenic |
| 1228385 | NM_000785.4(CYP27B1):c.497_500del (p.Val166fs) | Pathogenic |
| 1322185 | NM_000785.4(CYP27B1):c.403C>T (p.Gln135Ter) | Pathogenic |
| 1324206 | NM_000785.4(CYP27B1):c.1165C>T (p.Arg389Cys) | Pathogenic |
| 1387998 | NM_000785.4(CYP27B1):c.1166_1170dup (p.Pro391fs) | Pathogenic |
| 1420062 | NM_000785.4(CYP27B1):c.1174_1177del (p.Asp392fs) | Pathogenic |
| 1457427 | NM_000785.4(CYP27B1):c.1216-1G>C | Pathogenic |
| 1660 | NM_000785.4(CYP27B1):c.1004G>C (p.Arg335Pro) | Pathogenic |
| 1662 | NM_000785.4(CYP27B1):c.631del (p.Glu211fs) | Pathogenic |
| 1663 | NM_000785.4(CYP27B1):c.693del (p.Thr232fs) | Pathogenic |
| 1664 | NM_000785.4(CYP27B1):c.262del (p.Val88fs) | Pathogenic |
| 1666 | NM_000785.4(CYP27B1):c.962C>G (p.Thr321Arg) | Pathogenic |
| 1667 | NM_000785.4(CYP27B1):c.589+1G>A | Pathogenic |
| 1670 | NM_000785.4(CYP27B1):c.201_204delinsCTTCG (p.Gln67fs) | Pathogenic |
| 1672 | NM_000785.4(CYP27B1):c.1165C>G (p.Arg389Gly) | Pathogenic |
| 1673 | NM_000785.4(CYP27B1):c.1027C>T (p.Leu343Phe) | Pathogenic |
| 1685687 | NM_000785.4(CYP27B1):c.252_262del (p.Thr85fs) | Pathogenic |
| 1931662 | NM_000785.4(CYP27B1):c.171del (p.Leu58fs) | Pathogenic |
| 1943277 | NM_000785.4(CYP27B1):c.361C>T (p.Gln121Ter) | Pathogenic |
| 2116270 | NM_000785.4(CYP27B1):c.466G>T (p.Gly156Ter) | Pathogenic |
| 2137381 | NM_000785.4(CYP27B1):c.1136+1G>T | Pathogenic |
| 265095 | NM_000785.4(CYP27B1):c.1286G>C (p.Arg429Pro) | Pathogenic |
| 2720382 | NM_000785.4(CYP27B1):c.372C>A (p.Cys124Ter) | Pathogenic |
| 2736763 | NM_000785.4(CYP27B1):c.1376dup (p.Leu460fs) | Pathogenic |
| 2743001 | NM_000785.4(CYP27B1):c.467del (p.Gly156fs) | Pathogenic |
| 2743897 | NM_000785.4(CYP27B1):c.422dup (p.Ala142fs) | Pathogenic |
| 2746809 | NM_000785.4(CYP27B1):c.1096del (p.Gln366fs) | Pathogenic |
| 2764378 | NM_000785.4(CYP27B1):c.1453dup (p.Ala485fs) | Pathogenic |
SpliceAI
863 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:57764096:A:AC | donor_gain | 1.0000 |
| 12:57764097:C:CC | donor_gain | 1.0000 |
| 12:57764173:CAGT:C | acceptor_gain | 1.0000 |
| 12:57764177:C:CC | acceptor_gain | 1.0000 |
| 12:57764182:T:C | acceptor_gain | 1.0000 |
| 12:57764182:T:TC | acceptor_gain | 1.0000 |
| 12:57764190:C:CT | acceptor_gain | 1.0000 |
| 12:57764372:CCTCA:C | donor_loss | 1.0000 |
| 12:57764373:CTCA:C | donor_loss | 1.0000 |
| 12:57764374:TCA:T | donor_loss | 1.0000 |
| 12:57764375:CA:C | donor_loss | 1.0000 |
| 12:57764377:C:CT | donor_loss | 1.0000 |
| 12:57764387:T:TA | donor_gain | 1.0000 |
| 12:57764547:ACACC:A | acceptor_loss | 1.0000 |
| 12:57764549:ACCT:A | acceptor_loss | 1.0000 |
| 12:57764550:CCTGA:C | acceptor_loss | 1.0000 |
| 12:57764551:CTG:C | acceptor_loss | 1.0000 |
| 12:57764552:T:C | acceptor_loss | 1.0000 |
| 12:57764748:CCTCA:C | donor_loss | 1.0000 |
| 12:57764749:CTCA:C | donor_loss | 1.0000 |
| 12:57764750:TCA:T | donor_loss | 1.0000 |
| 12:57764751:CAC:C | donor_loss | 1.0000 |
| 12:57764752:A:AC | donor_gain | 1.0000 |
| 12:57764753:C:CC | donor_gain | 1.0000 |
| 12:57764753:C:CT | donor_loss | 1.0000 |
| 12:57764764:C:CA | donor_gain | 1.0000 |
| 12:57764818:T:TA | donor_gain | 1.0000 |
| 12:57764819:C:A | donor_gain | 1.0000 |
| 12:57764922:CTGAG:C | acceptor_gain | 1.0000 |
| 12:57764923:TGAG:T | acceptor_gain | 1.0000 |
AlphaMissense
3217 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:57763680:A:C | F448L | 0.995 |
| 12:57763680:A:T | F448L | 0.995 |
| 12:57763682:A:G | F448L | 0.995 |
| 12:57764378:C:G | R379T | 0.995 |
| 12:57763155:A:G | F505S | 0.993 |
| 12:57764532:A:G | W328R | 0.993 |
| 12:57764532:A:T | W328R | 0.993 |
| 12:57764176:T:A | R379S | 0.991 |
| 12:57764176:T:G | R379S | 0.991 |
| 12:57764378:C:A | R379I | 0.991 |
| 12:57763682:A:T | F448I | 0.990 |
| 12:57763758:G:C | F422L | 0.990 |
| 12:57763758:G:T | F422L | 0.990 |
| 12:57763760:A:G | F422L | 0.990 |
| 12:57764148:G:T | R389S | 0.990 |
| 12:57764387:T:A | E376V | 0.990 |
| 12:57763801:A:T | V408D | 0.986 |
| 12:57764388:C:T | E376K | 0.986 |
| 12:57765484:C:A | W134C | 0.986 |
| 12:57765484:C:G | W134C | 0.986 |
| 12:57763695:A:C | F443L | 0.984 |
| 12:57763695:A:T | F443L | 0.984 |
| 12:57763697:A:G | F443L | 0.984 |
| 12:57763161:A:G | L503P | 0.983 |
| 12:57763725:C:A | W433C | 0.983 |
| 12:57763725:C:G | W433C | 0.983 |
| 12:57763741:A:G | F428S | 0.983 |
| 12:57766054:C:A | W113C | 0.983 |
| 12:57766054:C:G | W113C | 0.983 |
| 12:57763678:C:T | G449D | 0.982 |
dbSNP variants (sampled 300 via entrez): RS1001021197 (12:57764481 A>T), RS1001556671 (12:57762470 A>T), RS1001780691 (12:57768566 A>C,G), RS1001892726 (12:57764214 G>A,C), RS1002247516 (12:57765508 T>C), RS1002527261 (12:57766578 C>T), RS1002601613 (12:57765127 A>G), RS1003845117 (12:57763733 C>A), RS1003929056 (12:57764020 G>C), RS1005497618 (12:57765834 T>C), RS1006596213 (12:57762085 C>A,G,T), RS1007583468 (12:57768207 G>A,T), RS1007806809 (12:57761963 G>A), RS1008304474 (12:57765639 G>C,T), RS1008590639 (12:57767059 T>C)
Disease associations
OMIM: gene MIM:609506 | disease phenotypes: MIM:264700, MIM:126200
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| vitamin D-dependent rickets, type 1A | Definitive | Autosomal recessive |
| vitamin D-dependent rickets, type 1 | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| vitamin D-dependent rickets, type 1A | Definitive | AR |
Mondo (3): vitamin D-dependent rickets, type 1A (MONDO:0020723), vitamin D-dependent rickets, type 1 (MONDO:0009924), multiple sclerosis, susceptibility to (MONDO:0007462)
Orphanet (1): Hypocalcemic vitamin D-dependent rickets (Orphanet:289157)
HPO phenotypes
68 total (30 of 68 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000117 | Renal phosphate wasting |
| HP:0000684 | Delayed eruption of teeth |
| HP:0000737 | Irritability |
| HP:0000867 | Secondary hyperparathyroidism |
| HP:0000886 | Deformed rib cage |
| HP:0000893 | Bulging of the costochondral junction |
| HP:0000897 | Rachitic rosary |
| HP:0000920 | Enlargement of the costochondral junction |
| HP:0001252 | Hypotonia |
| HP:0001270 | Motor delay |
| HP:0001281 | Tetany |
| HP:0001288 | Gait disturbance |
| HP:0001290 | Generalized hypotonia |
| HP:0001324 | Muscle weakness |
| HP:0001508 | Failure to thrive |
| HP:0001510 | Growth delay |
| HP:0001538 | Protuberant abdomen |
| HP:0001638 | Cardiomyopathy |
| HP:0001744 | Splenomegaly |
| HP:0001931 | Hypochromic anemia |
| HP:0001942 | Metabolic acidosis |
| HP:0001974 | Increased total leukocyte count |
| HP:0002007 | Frontal bossing |
| HP:0002148 | Hypophosphatemia |
| HP:0002199 | Hypocalcemic seizures |
| HP:0002240 | Hepatomegaly |
| HP:0002653 | Bone pain |
| HP:0002659 | Increased susceptibility to fractures |
| HP:0002663 | Delayed epiphyseal ossification |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000425_3 | Multiple sclerosis | 5.000000e-11 |
| GCST001198_1 | Multiple sclerosis | 2.000000e-09 |
| GCST010703_209 | Brain morphology (MOSTest) | 2.000000e-11 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004346 | neuroimaging measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C562688 | Vitamin D Hydroxylation-Deficient Rickets, Type 1A (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5993 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 75,361 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL157101 | KETOCONAZOLE | 4 | 75,361 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
3 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs10877012 | Efficacy | 3 | peginterferon alfa-2b;ribavirin | Chronic hepatitis C virus infection |
| rs10877012 | Efficacy | 3 | deferasirox | Beta-thalassemia and related diseases |
| rs4646536 | Toxicity | 3 | tenofovir disoproxil fumarate | HIV infectious disease;Nephrotoxicity |
PharmGKB variants
2 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs10877012 | CYP27B1, METTL1 | 3 | 2.00 | 2 | peginterferon alfa-2b;ribavirin;deferasirox |
| rs4646536 | CYP27B1 | 3 | 3.25 | 1 | tenofovir disoproxil fumarate |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — CYP24, CYP26 and CYP27 families
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| CTA091 | Inhibition | 6.26 | pIC50 |
Binding affinities (BindingDB)
6 measured of 6 human assays (6 total across all organisms); most potent 6 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| AB47 | KI | 21 nM |
| VIMI | KI | 21 nM |
| 24F2-1,25(OH)D3 | KI | 24 nM |
| TS17 | KI | 39 nM |
| CPA1 | KI | 42 nM |
| 24COOH-25(OH)D3 | KI | 90 nM |
ChEMBL bioactivities
10 potent at pChembl≥5 of 10 total, top 9 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.22 | IC50 | 60.2 | nM | CHEMBL4099180 |
| 7.02 | IC50 | 95.2 | nM | CHEMBL4081152 |
| 6.47 | IC50 | 340 | nM | KETOCONAZOLE |
| 6.39 | IC50 | 410 | nM | CHEMBL4074768 |
| 6.26 | IC50 | 554 | nM | CHEMBL389014 |
| 6.26 | IC50 | 554 | nM | CHEMBL255088 |
| 6.24 | IC50 | 570 | nM | CHEMBL4104395 |
| 6.21 | IC50 | 616.1 | nM | CHEMBL1170908 |
| 6.21 | IC50 | 616 | nM | CHEMBL253613 |
PubChem BioAssay actives
17 with measured affinity, of 20 total; 15 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 1-[4-[4-[[(2R,4S)-2-(2,4-dichlorophenyl)-2-(imidazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]piperazin-1-yl]ethanone | 1799838: CYP27B1 Inhibition Assay from Article 10.1021/bi101488p: “Screening of selective inhibitors of 1a,25-dihydroxyvitamin D3 24-hydroxylase using recombinant human enzyme expressed in Escherichia coli.” | ki | 0.0530 | uM |
| 2-(2,4-dichlorophenyl)-1-[1-[2-(dimethylamino)ethyl]tetrazol-5-yl]sulfanyl-3-imidazol-1-ylpropan-2-ol | 1464254: Inhibition of human CYP27B1 | ic50 | 0.0602 | uM |
| [(2R)-2-[(4E,7aR)-4-[(2Z)-2-[(5R)-5-hydroxy-2-methylidenecyclohexylidene]ethylidene]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]propyl] 2-bromoacetate | 1799838: CYP27B1 Inhibition Assay from Article 10.1021/bi101488p: “Screening of selective inhibitors of 1a,25-dihydroxyvitamin D3 24-hydroxylase using recombinant human enzyme expressed in Escherichia coli.” | ki | 0.0680 | uM |
| cis-(1S,3R)-5-[(2E)-2-[(7aR)-1-[(2R)-1-imidazol-1-ylpropan-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidenecyclohexane-1,3-diol | 1799838: CYP27B1 Inhibition Assay from Article 10.1021/bi101488p: “Screening of selective inhibitors of 1a,25-dihydroxyvitamin D3 24-hydroxylase using recombinant human enzyme expressed in Escherichia coli.” | ki | 0.0900 | uM |
| N-[1-(2,4-dichlorophenyl)-2-imidazol-1-ylethyl]-5-(dimethylamino)naphthalene-1-sulfonamide | 1464254: Inhibition of human CYP27B1 | ic50 | 0.0952 | uM |
| 1-[4-[4-[[2-(2,4-dichlorophenyl)-2-(imidazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]piperazin-1-yl]ethanone | 1464256: Inhibition of human CYP27B1 expressed in Escherichia coli assessed as reduction in hydrolase activity incubated for 25 mins using Adx, AdR and 1,25(OH)2D3 | ic50 | 0.3400 | uM |
| 5-methyl-4-[(3-methyl-5-oxo-1,2-dihydropyrazol-4-yl)-[3-(pyridin-4-ylmethoxy)phenyl]methyl]-1,2-dihydropyrazol-3-one | 1464256: Inhibition of human CYP27B1 expressed in Escherichia coli assessed as reduction in hydrolase activity incubated for 25 mins using Adx, AdR and 1,25(OH)2D3 | ic50 | 0.4100 | uM |
| trans-(1R,3S,5Z)-5-[(2E)-2-[(7aS)-7a-methyl-1-[(2R)-4-(phenylsulfonimidoyl)butan-2-yl]-3a,5,6,7-tetrahydro-3H-inden-4-ylidene]ethylidene]-4-methylidenecyclohexane-1,3-diol | 311067: Inhibition of CYP27B1 | ic50 | 0.5540 | uM |
| trans-(1R,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-7a-methyl-1-[(2R)-4-(phenylsulfonimidoyl)butan-2-yl]-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidenecyclohexane-1,3-diol | 1704648: Inhibition of CYP27B in human SW900 cells using 3H-(23,24)-25-(OH)D3 as substrate incubated for 5 hrs by HPLC method | ic50 | 0.5540 | uM |
| 5-methyl-4-[(3-methyl-5-oxo-1,2-dihydropyrazol-4-yl)-[4-(pyridin-4-ylmethoxy)phenyl]methyl]-1,2-dihydropyrazol-3-one | 1464256: Inhibition of human CYP27B1 expressed in Escherichia coli assessed as reduction in hydrolase activity incubated for 25 mins using Adx, AdR and 1,25(OH)2D3 | ic50 | 0.5700 | uM |
| 4-(4-chlorophenyl)-N-(2-imidazol-1-yl-2-phenylethyl)benzamide | 311065: Inhibition of CYP27B1 in human keratinocytes | ic50 | 0.6160 | uM |
| 4-(4-chlorophenyl)-N-[(2R)-2-imidazol-1-yl-2-phenylethyl]benzamide | 1464254: Inhibition of human CYP27B1 | ic50 | 0.6161 | uM |
| [(4S)-4-[(4E,7aR)-4-[(2Z)-2-[(5R)-5-hydroxy-2-methylidenecyclohexylidene]ethylidene]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]pentyl] 4-methylbenzenesulfonate | 1799838: CYP27B1 Inhibition Assay from Article 10.1021/bi101488p: “Screening of selective inhibitors of 1a,25-dihydroxyvitamin D3 24-hydroxylase using recombinant human enzyme expressed in Escherichia coli.” | ki | 1.5200 | uM |
| (4S)-4-[(4E,7aR)-4-[(2Z)-2-[(5R)-5-hydroxy-2-methylidenecyclohexylidene]ethylidene]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]pentanoic acid | 1799838: CYP27B1 Inhibition Assay from Article 10.1021/bi101488p: “Screening of selective inhibitors of 1a,25-dihydroxyvitamin D3 24-hydroxylase using recombinant human enzyme expressed in Escherichia coli.” | ki | 1.7000 | uM |
| cis-(1R,3S)-5-[(2E)-2-[(7aR)-1-[(2S)-5-(cyclopropylamino)pentan-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidenecyclohexane-1,3-diol | 1799838: CYP27B1 Inhibition Assay from Article 10.1021/bi101488p: “Screening of selective inhibitors of 1a,25-dihydroxyvitamin D3 24-hydroxylase using recombinant human enzyme expressed in Escherichia coli.” | ki | 3.3400 | uM |
CTD chemical–gene interactions
56 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Calcitriol | increases expression, decreases chemical synthesis, increases chemical synthesis | 3 |
| Estradiol | affects activity, affects expression, increases activity, increases expression | 3 |
| biochanin A | affects activity, affects expression, increases activity, increases expression | 2 |
| 25-hydroxyvitamin D | affects abundance, increases expression, increases reaction | 2 |
| Benzo(a)pyrene | increases expression, increases methylation | 2 |
| Calcifediol | increases expression, increases reaction, increases hydroxylation, affects metabolic processing | 2 |
| Lipopolysaccharides | increases expression, increases reaction, decreases expression | 2 |
| Tobacco Smoke Pollution | increases expression | 2 |
| Valproic Acid | decreases methylation, increases expression | 2 |
| Genistein | affects activity, affects expression, increases activity, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| lead acetate | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| potassium chromate(VI) | affects cotreatment, increases expression | 1 |
| epigallocatechin gallate | affects cotreatment, increases expression | 1 |
| 2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridine | decreases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| SB 203580 | increases expression, decreases reaction | 1 |
| alpha-cyano-(3,4-dihydroxy)-N-benzylcinnamide | decreases reaction, increases expression | 1 |
| ICG 001 | decreases expression | 1 |
| abrine | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | increases expression | 1 |
| jinfukang | decreases expression, increases reaction | 1 |
| NSC 689534 | affects binding, increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Arsenic | increases methylation | 1 |
| Cisplatin | decreases expression, increases reaction | 1 |
ChEMBL screening assays
7 unique, capped per target: 6 binding, 1 admet
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2039997 | ADMET | Drug metabolism assessed as human CYP27B1-mediated compound metabolism after 2 to 12 mins incubation using compound loaded phospholipid vesicle by reverse phase HPLC | Design, synthesis, and biological action of 20R-hydroxyvitamin D3. — J Med Chem |
| CHEMBL4047051 | Binding | Inhibition of human CYP27B1 | Analysis of the binding sites of vitamin D 1α-hydroxylase (CYP27B1) and vitamin D 24-hydroxylase (CYP24A1) for the design of selective CYP24A1 inhibitors: Homology modelling, molecular dynamics simulations and identification of key binding requirements. — Bioorg Med Chem |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D8JT | Ubigene HCT 116 CYP27B1 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
33 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT06384976 | PHASE2 | ACTIVE_NOT_RECRUITING | KYSA-7: A Study of Anti-CD19 CAR T-Cell Therapy, in Subjects With Refractory Primary and Secondary Progressive Multiple Sclerosis |
| NCT06782724 | PHASE2 | RECRUITING | Psilocybin Therapy for Psychological Distress in Palliative Patients |
| NCT05102682 | PHASE1 | COMPLETED | Robotics for Mobility Rehabilitation in MS |
| NCT06999434 | PHASE1 | RECRUITING | Exploring the Utility of [18F]3F4AP for Demyelination Imaging |
| NCT00872053 | PHASE1/PHASE2 | COMPLETED | Effect of Robot-assisted Training on Foot Drop in Multiple Sclerosis |
| NCT06548620 | EARLY_PHASE1 | WITHDRAWN | A Study of RD06-04 in Patients With Active Autoimmune Diseases |
| NCT06775912 | EARLY_PHASE1 | RECRUITING | Clinical Study on Targeted CD19/BCMA CAR-T Therapy for Autoimmune Diseases |
| NCT01128075 | Not specified | COMPLETED | Treatment Adherence When Using RebiSmart™ in Relapsing Multiple Sclerosis Subjects |
| NCT01628276 | Not specified | COMPLETED | Brain Functional Connectivity Changes Following Cognitive Rehabilitation in Multiple Sclerosis: an fMRI Study |
| NCT02490943 | Not specified | COMPLETED | A Pilot Study of Warm and Cold Compress to Reduce Injection Site Erythema Due to Peginterferon-beta-1a in MS |
| NCT03155334 | Not specified | UNKNOWN | Understanding Evaluation of Patient Information Sheets by User Testing Method |
| NCT03316404 | Not specified | COMPLETED | Evaluating Multiple Sclerosis Patients ShOWing A GEnomic Signature of Therapy Response |
| NCT04095377 | Not specified | COMPLETED | Development of Automated Analysis to Electroencephelogram (EEG) Data in Patients Treated at the Sagol Hyperbaric Medicine and Research Center at the Years 2017-2019. |
| NCT04148313 | Not specified | WITHDRAWN | A Pilot Study to Explore the Role of Gut Flora in Multiple Sclerosis |
| NCT04379661 | Not specified | COMPLETED | SUNLIGHT Study: Online Support Groups for MS to Address COVID-19 |
| NCT04415372 | Not specified | ENROLLING_BY_INVITATION | Macromolecular Imaging of White and Gray Matter Pathology in Multiple Sclerosis |
| NCT04530955 | Not specified | UNKNOWN | Transitioning to a Valve-Gated Intrathecal Drug Delivery System (IDDS) |
| NCT04822623 | Not specified | UNKNOWN | Imaging Evaluation of Central Nervous Autoimmune Diseases |
| NCT05435404 | Not specified | COMPLETED | Qualitative Study Patient & Physician Experiences Botox COVID-19 |
| NCT05857280 | Not specified | UNKNOWN | EXOPULSE Mollii Suit, Motor Function & Multiple Sclerosis (EXOSEP 2) |
| NCT05865405 | Not specified | ACTIVE_NOT_RECRUITING | A Closed Loop, Doctor to Patient, Mobile Application for Depression in People With Multiple Sclerosis |
| NCT05912595 | Not specified | UNKNOWN | EXOPULSE Mollii Suit, Spasticity, Muscular Oxygenation & Multiple Sclerosis (ENNOX 2) |
| NCT05991297 | Not specified | COMPLETED | Effects of Deep Sensory Assisted Rehabilitation on Gait and Balance in Patients With Multiple Sclerosis |
| NCT06143930 | Not specified | UNKNOWN | Blood Flow Restriction Training in Multiple Sclerosis |
| NCT06199219 | Not specified | COMPLETED | Ex-Plissit Model Based Counseling on Sexual Function and Sexual Satisfaction |
| NCT06770959 | Not specified | NOT_YET_RECRUITING | Frequency of Gastrointestinal and Hepatic Manifestations Among Patients with Multiple Sclerosis, a Clinical Hospital Based Study |
| NCT06849882 | Not specified | RECRUITING | Dubousset Functional Test: an Investigation of Its Validity and Reliability in Individuals with Multiple Sclerosis |
| NCT07087873 | Not specified | RECRUITING | Assessment of Transcranial Alternating Current Stimulation’s Clinical Efficacy in Treating Cognitive Impairment of Idiopathic Inflammatory Demyelinating Diseases |
| NCT07202195 | Not specified | RECRUITING | At Home Use of Stimulation Suits for Managing MS Symptoms |
| NCT07222618 | Not specified | RECRUITING | Selfie Videos: A Novel, Patient-centered, Comprehensive Approach to Measuring Function in MS |
| NCT07235644 | Not specified | ACTIVE_NOT_RECRUITING | Comparison of Efficacy and Safety in Patients Switching From MabThera® to Rixathon® in Relapsing-Remitting Multiple Sclerosis |
| NCT07304960 | Not specified | NOT_YET_RECRUITING | Multiple Sclerosis Versus Neuromyelitis Optica Spectrum Disorder |
| NCT07521384 | Not specified | ENROLLING_BY_INVITATION | Real World Outcomes of Intranasal MuSE Exosomes and Stem Cells in Neurological Regenerative Therapy |
Related Atlas pages
- Associated diseases: vitamin D-dependent rickets, type 1A, vitamin D-dependent rickets, type 1
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): multiple sclerosis, susceptibility to, vitamin D-dependent rickets, type 1, vitamin D-dependent rickets, type 1A