CYP4A22
gene geneOn this page
Summary
CYP4A22 (cytochrome P450 family 4 subfamily A member 22, HGNC:20575) is a protein-coding gene on chromosome 1p33, encoding Cytochrome P450 4A22 (Q5TCH4). Catalyzes the omega- and (omega-1)-hydroxylation of various fatty acids such as laurate and palmitate.
This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This gene is part of a cluster of cytochrome P450 genes on chromosome 1p33. Alternative splicing results in multiple transcript variants encoding different isoforms.
Source: NCBI Gene 284541 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 83 total
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001010969
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:20575 |
| Approved symbol | CYP4A22 |
| Name | cytochrome P450 family 4 subfamily A member 22 |
| Location | 1p33 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000162365 |
| Ensembl biotype | protein_coding |
| OMIM | 615341 |
| Entrez | 284541 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 14 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000294337, ENST00000371890, ENST00000371891, ENST00000485117, ENST00000490948, ENST00000619754, ENST00000856556, ENST00000856557, ENST00000856558, ENST00000856559, ENST00000856560, ENST00000856561, ENST00000856562, ENST00000856563, ENST00000856564, ENST00000856565
RefSeq mRNA: 2 — MANE Select: NM_001010969
NM_001010969, NM_001308102
CCDS: CCDS30707, CCDS76160
Canonical transcript exons
ENST00000371891 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001456394 | 47148602 | 47149727 |
| ENSE00001816967 | 47137441 | 47137680 |
| ENSE00003465534 | 47145866 | 47145930 |
| ENSE00003480171 | 47144837 | 47144970 |
| ENSE00003489967 | 47142108 | 47142235 |
| ENSE00003548065 | 47146077 | 47146153 |
| ENSE00003570622 | 47144357 | 47144463 |
| ENSE00003643829 | 47140780 | 47140921 |
| ENSE00003660199 | 47143762 | 47143916 |
| ENSE00003660888 | 47144550 | 47144740 |
| ENSE00003668002 | 47143269 | 47143393 |
| ENSE00003692587 | 47141571 | 47141615 |
Expression profiles
Bgee: expression breadth broad, 77 present calls, max score 96.06.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0858 / max 32.4123, expressed in 10 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 2768 | 0.0858 | 10 |
Top tissues by expression
113 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lobe of liver | UBERON:0001114 | 96.06 | gold quality |
| liver | UBERON:0002107 | 95.77 | gold quality |
| quadriceps femoris | UBERON:0001377 | 82.01 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 81.74 | gold quality |
| cerebellar vermis | UBERON:0004720 | 81.04 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 75.69 | silver quality |
| kidney | UBERON:0002113 | 73.14 | gold quality |
| thymus | UBERON:0002370 | 60.01 | silver quality |
| metanephros cortex | UBERON:0010533 | 58.21 | gold quality |
| cortex of kidney | UBERON:0001225 | 57.72 | gold quality |
| colonic epithelium | UBERON:0000397 | 54.29 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 54.11 | gold quality |
| right lung | UBERON:0002167 | 52.99 | gold quality |
| tibial nerve | UBERON:0001323 | 52.27 | gold quality |
| mucosa of stomach | UBERON:0001199 | 52.07 | gold quality |
| calcaneal tendon | UBERON:0003701 | 51.90 | gold quality |
| sural nerve | UBERON:0015488 | 51.71 | gold quality |
| adipose tissue | UBERON:0001013 | 50.96 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 49.21 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 48.47 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 48.01 | gold quality |
| omental fat pad | UBERON:0010414 | 47.47 | gold quality |
| gastrocnemius | UBERON:0001388 | 46.79 | gold quality |
| muscle of leg | UBERON:0001383 | 46.59 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 46.25 | gold quality |
| tibial artery | UBERON:0007610 | 44.84 | gold quality |
| popliteal artery | UBERON:0002250 | 44.77 | gold quality |
| lung | UBERON:0002048 | 44.27 | gold quality |
| heart left ventricle | UBERON:0002084 | 44.22 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 44.21 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 3.88 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): PPARA
Literature-anchored findings (GeneRIF, showing 4)
- A homology model has been constructed for CYP4A22 and refined by molecular dynamics simulation. (PMID:20079672)
- Data suggest that results could be helpful for further investigations of the potential role of CYP4A variants in the genetic susceptibility to cardiovascular diseases such as arterial hypertension. (PMID:21820496)
- Study demonstrate that the CYP4A22 gene codes for an active enzyme. It catalyzes the hydroxylation of both lauric and myristic acids. The structural model of CYP4A22 and substrate docking experiments suggest that its broadened spectrum of catalyzed reactions results from increased residual mobility of active site residue Phe320 and that arginines Arg96 and Arg233 are essential for substrate recognition. (PMID:31199497)
- Novel polymorphisms in CYP4A22 associated with susceptibility to coronary heart disease. (PMID:38438909)
Cross-species orthologs
36 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | cyp4t8 | ENSDARG00000004964 |
| danio_rerio | cyp4f3 | ENSDARG00000053530 |
| mus_musculus | Cyp4a31 | ENSMUSG00000028712 |
| mus_musculus | Cyp4a32 | ENSMUSG00000063929 |
| mus_musculus | Cyp4a10 | ENSMUSG00000066072 |
| mus_musculus | Cyp4a30b | ENSMUSG00000084346 |
| rattus_norvegicus | Cyp4a1 | ENSRNOG00000009597 |
| rattus_norvegicus | Cyp4a3 | ENSRNOG00000066878 |
| drosophila_melanogaster | Cyp4d1 | FBGN0005670 |
| drosophila_melanogaster | Cyp4d2 | FBGN0011576 |
| drosophila_melanogaster | Cyp4e2 | FBGN0014469 |
| drosophila_melanogaster | Cyp4c3 | FBGN0015032 |
| drosophila_melanogaster | Cyp4d8 | FBGN0015033 |
| drosophila_melanogaster | Cyp4e1 | FBGN0015034 |
| drosophila_melanogaster | Cyp4e3 | FBGN0015035 |
| drosophila_melanogaster | Cyp4ae1 | FBGN0015036 |
| drosophila_melanogaster | Cyp4p1 | FBGN0015037 |
| drosophila_melanogaster | Cyp4d14 | FBGN0023541 |
| drosophila_melanogaster | Cyp4s3 | FBGN0030615 |
| drosophila_melanogaster | Cyp4ac1 | FBGN0031693 |
| drosophila_melanogaster | Cyp4ac2 | FBGN0031694 |
| drosophila_melanogaster | Cyp4ac3 | FBGN0031695 |
| drosophila_melanogaster | Cyp4d21 | FBGN0031925 |
| drosophila_melanogaster | Cyp4ad1 | FBGN0033292 |
| drosophila_melanogaster | Cyp4p2 | FBGN0033395 |
| drosophila_melanogaster | Cyp4p3 | FBGN0033397 |
| drosophila_melanogaster | Cyp4aa1 | FBGN0034053 |
| drosophila_melanogaster | Cyp4d20 | FBGN0035344 |
| drosophila_melanogaster | Cyp312a1 | FBGN0036778 |
| caenorhabditis_elegans | WBGENE00007140 | |
| caenorhabditis_elegans | WBGENE00009226 | |
| caenorhabditis_elegans | WBGENE00010354 | |
| caenorhabditis_elegans | WBGENE00013381 | |
| caenorhabditis_elegans | WBGENE00016147 | |
| caenorhabditis_elegans | WBGENE00021200 | |
| caenorhabditis_elegans | WBGENE00021412 |
Paralogs (12): CYP19A1 (ENSG00000137869), CYP4B1 (ENSG00000142973), CYP4V2 (ENSG00000145476), CYP4F11 (ENSG00000171903), CYP4F22 (ENSG00000171954), CYP4F2 (ENSG00000186115), CYP4Z1 (ENSG00000186160), CYP4F12 (ENSG00000186204), CYP4X1 (ENSG00000186377), CYP4F8 (ENSG00000186526), CYP4F3 (ENSG00000186529), CYP4A11 (ENSG00000187048)
Protein
Protein identifiers
Cytochrome P450 4A22 — Q5TCH4 (reviewed: Q5TCH4)
Alternative names: CYPIVA22, Fatty acid omega-hydroxylase, Lauric acid omega-hydroxylase, Long-chain fatty acid omega-monooxygenase
All UniProt accessions (4): A0A087WZX9, Q5TCH4, A0A0C4DFN9, Q5TCH5
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the omega- and (omega-1)-hydroxylation of various fatty acids such as laurate and palmitate. Shows no activity towards arachidonic acid and prostaglandin A1. Lacks functional activity in the kidney and does not contribute to renal 20-hydroxyeicosatetraenoic acid (20-HETE) biosynthesis.
Subcellular location. Endoplasmic reticulum membrane. Microsome membrane.
Similarity. Belongs to the cytochrome P450 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q5TCH4-1 | 1 | yes |
| Q5TCH4-2 | 2 |
RefSeq proteins (2): NP_001010969, NP_001295031 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001128 | Cyt_P450 | Family |
| IPR002401 | Cyt_P450_E_grp-I | Family |
| IPR017972 | Cyt_P450_CS | Conserved_site |
| IPR036396 | Cyt_P450_sf | Homologous_superfamily |
| IPR050196 | Cytochrome_P450_Monoox | Family |
Pfam: PF00067
Catalyzed reactions (Rhea), 1 shown:
- an omega-methyl-long-chain fatty acid + reduced [NADPH–hemoprotein reductase] + O2 = an omega-hydroxy-long-chain fatty acid + oxidized [NADPH–hemoprotein reductase] + H2O + H(+) (RHEA:56748)
UniProt features (29 total): sequence variant 14, sequence conflict 9, binding site 2, propeptide 1, chain 1, modified residue 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q5TCH4-F1 | 89.57 | 0.69 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (2): 321 (covalent); 457 (axial binding residue)
Post-translational modifications (1): 440
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-211935 | Fatty acids |
| R-HSA-211958 | Miscellaneous substrates |
| R-HSA-211979 | Eicosanoids |
| R-HSA-2142691 | Synthesis of Leukotrienes (LT) and Eoxins (EX) |
MSigDB gene sets: 117 (showing top):
GOBP_LIPID_MODIFICATION, REACTOME_BIOLOGICAL_OXIDATIONS, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_PAIRED_DONORS_WITH_INCORPORATION_OR_REDUCTION_OF_MOLECULAR_OXYGEN, GOBP_LONG_CHAIN_FATTY_ACID_METABOLIC_PROCESS, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, GOBP_ORGANIC_ACID_BIOSYNTHETIC_PROCESS, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, WIEMANN_TELOMERE_SHORTENING_AND_CHRONIC_LIVER_DAMAGE_UP, KEGG_PPAR_SIGNALING_PATHWAY, ICHIBA_GRAFT_VERSUS_HOST_DISEASE_35D_DN, GOBP_LIPID_METABOLIC_PROCESS, GOBP_ORGANIC_ACID_METABOLIC_PROCESS, GOBP_LINOLEIC_ACID_METABOLIC_PROCESS, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_CH_OH_GROUP_OF_DONORS, GOBP_UNSATURATED_FATTY_ACID_METABOLIC_PROCESS
GO Biological Process (7): kidney development (GO:0001822), lipid hydroxylation (GO:0002933), arachidonate metabolic process (GO:0019369), linoleic acid metabolic process (GO:0043651), icosanoid biosynthetic process (GO:0046456), lauric acid metabolic process (GO:0048252), lipid metabolic process (GO:0006629)
GO Molecular Function (12): iron ion binding (GO:0005506), arachidonate monooxygenase activity (GO:0008391), alkane 1-monooxygenase activity (GO:0018685), heme binding (GO:0020037), long-chain fatty acid omega-hydroxylase activity (GO:0102033), 16-hydroxypalmitate dehydrogenase activity (GO:0103002), medium-chain fatty acid omega-hydroxylase activity (GO:0140981), monooxygenase activity (GO:0004497), oxidoreductase activity (GO:0016491), oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705), oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen (GO:0016712), metal ion binding (GO:0046872)
GO Cellular Component (4): obsolete extracellular space (GO:0005615), endoplasmic reticulum membrane (GO:0005789), endoplasmic reticulum (GO:0005783), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Cytochrome P450 - arranged by substrate type | 3 |
| Arachidonate metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| long-chain fatty acid metabolic process | 2 |
| icosanoid metabolic process | 2 |
| unsaturated fatty acid metabolic process | 2 |
| olefinic compound metabolic process | 2 |
| monooxygenase activity | 2 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2 |
| fatty acid omega-hydroxylase activity | 2 |
| oxidoreductase activity | 2 |
| animal organ development | 1 |
| renal system development | 1 |
| lipid modification | 1 |
| carboxylic acid biosynthetic process | 1 |
| medium-chain fatty acid metabolic process | 1 |
| primary metabolic process | 1 |
| transition metal ion binding | 1 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen | 1 |
| tetrapyrrole binding | 1 |
| oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1474 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| CYP4A22 | CYP2W1 | Q8TAV3 | 447 |
| CYP4A22 | CYP7B1 | O75881 | 404 |
| CYP4A22 | PPIG | Q13427 | 399 |
| CYP4A22 | AKR1C1 | P52896 | 386 |
| CYP4A22 | CYP2F1 | P24903 | 365 |
| CYP4A22 | CYB5R3 | P00387 | 364 |
| CYP4A22 | ACAA1 | P09110 | 357 |
| CYP4A22 | CYB5R1 | Q9UHQ9 | 353 |
| CYP4A22 | CYB5R4 | Q7L1T6 | 353 |
| CYP4A22 | CYB5R2 | Q6BCY4 | 353 |
| CYP4A22 | NAMPT | P43490 | 350 |
| CYP4A22 | AKR1C2 | P52895 | 348 |
| CYP4A22 | CYP8B1 | Q9UNU6 | 340 |
| CYP4A22 | CYB5RL | Q6IPT4 | 325 |
| CYP4A22 | EHHADH | Q08426 | 304 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CYP4A22 | CYP4A11 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CYP4A22 | CANX | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (2): CYP4A11 (Affinity Capture-MS), CANX (Affinity Capture-MS)
ESM2 similar proteins: A2A974, O35728, O88833, P00184, P00186, P04799, P08516, P08684, P10611, P13584, P14579, P14581, P15128, P15129, P20815, P20816, P20817, P24453, P24462, P24463, P24464, P33268, P51869, P56592, P78329, P79102, P79401, Q00557, Q02928, Q06367, Q08477, Q0IIF9, Q29496, Q3LFT9, Q4V8D1, Q5KQT6, Q5TCH4, Q64391, Q64462, Q64464
Diamond homologs: A0A067DE75, A0A067ELB0, A0A067GFT7, A0A0B4L1W8, A0A0S2II38, A0A0U2U8U5, A0A140JWM8, A0A1D8QMD2, A0A1I9Q5Z0, A0A2H5AIX6, A0A3Q7HBJ5, A0A3Q7HS74, A0A5B8NBK9, A0A5B8ND26, A0A9E7S4M3, A0AAW1JA93, A0AAW1NEA3, A2A974, A2RRT9, A2Z212, A5BFI4, A9QNE7, F6H9N6, H2DH16, I1RE80, I7C6E8, I7CT85, K4CEE8, K4CI52, O14442, O18993, O35728, O46512, O48958, O81077, P08516, P0DXH8, P0DXI3, P0DXU9, P11511
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
83 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 68 |
| Likely benign | 5 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1581 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:47137678:G:GT | donor_gain | 1.0000 |
| 1:47142106:AG:A | acceptor_gain | 1.0000 |
| 1:47142107:GG:G | acceptor_gain | 1.0000 |
| 1:47142232:GCTG:G | donor_gain | 1.0000 |
| 1:47142234:TGGT:T | donor_loss | 1.0000 |
| 1:47142236:G:GG | donor_gain | 1.0000 |
| 1:47142236:GT:G | donor_loss | 1.0000 |
| 1:47142237:TGA:T | donor_loss | 1.0000 |
| 1:47142238:GAG:G | donor_loss | 1.0000 |
| 1:47143263:CCACA:C | acceptor_loss | 1.0000 |
| 1:47143264:CACA:C | acceptor_loss | 1.0000 |
| 1:47143265:ACAGG:A | acceptor_loss | 1.0000 |
| 1:47143266:CAGG:C | acceptor_loss | 1.0000 |
| 1:47143267:A:AT | acceptor_loss | 1.0000 |
| 1:47143390:ACAGG:A | donor_loss | 1.0000 |
| 1:47143391:CAGG:C | donor_loss | 1.0000 |
| 1:47143392:AGGTC:A | donor_loss | 1.0000 |
| 1:47143393:GG:G | donor_loss | 1.0000 |
| 1:47143395:T:G | donor_loss | 1.0000 |
| 1:47144349:T:A | acceptor_gain | 1.0000 |
| 1:47144353:ACAG:A | acceptor_loss | 1.0000 |
| 1:47144354:C:G | acceptor_gain | 1.0000 |
| 1:47144355:A:AG | acceptor_gain | 1.0000 |
| 1:47144356:G:GG | acceptor_gain | 1.0000 |
| 1:47144356:G:GT | acceptor_loss | 1.0000 |
| 1:47144356:GA:G | acceptor_gain | 1.0000 |
| 1:47144356:GAC:G | acceptor_gain | 1.0000 |
| 1:47144356:GACC:G | acceptor_gain | 1.0000 |
| 1:47144356:GACCA:G | acceptor_gain | 1.0000 |
| 1:47144462:AA:A | donor_gain | 1.0000 |
AlphaMissense
3424 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:47146095:T:C | F436L | 0.918 |
| 1:47146097:T:A | F436L | 0.918 |
| 1:47146097:T:G | F436L | 0.918 |
| 1:47146137:T:C | F450L | 0.914 |
| 1:47146139:C:A | F450L | 0.914 |
| 1:47146139:C:G | F450L | 0.914 |
| 1:47142173:T:C | F150L | 0.903 |
| 1:47142175:C:A | F150L | 0.903 |
| 1:47142175:C:G | F150L | 0.903 |
| 1:47148669:T:C | F478L | 0.895 |
| 1:47148671:T:A | F478L | 0.895 |
| 1:47148671:T:G | F478L | 0.895 |
| 1:47146128:T:C | F447L | 0.893 |
| 1:47146130:C:A | F447L | 0.893 |
| 1:47146130:C:G | F447L | 0.893 |
| 1:47137636:T:C | F51L | 0.892 |
| 1:47137638:C:A | F51L | 0.892 |
| 1:47137638:C:G | F51L | 0.892 |
| 1:47146080:T:C | F431L | 0.886 |
| 1:47146082:T:A | F431L | 0.886 |
| 1:47146082:T:G | F431L | 0.886 |
| 1:47140828:T:C | F82L | 0.875 |
| 1:47140830:C:A | F82L | 0.875 |
| 1:47140830:C:G | F82L | 0.875 |
| 1:47143362:T:C | F202L | 0.851 |
| 1:47143364:C:A | F202L | 0.851 |
| 1:47143364:C:G | F202L | 0.851 |
| 1:47144921:A:C | R391S | 0.826 |
| 1:47144921:A:T | R391S | 0.826 |
| 1:47144604:T:C | F318L | 0.809 |
dbSNP variants (sampled 300 via entrez): RS1000056342 (1:47147173 C>A,T), RS1000090066 (1:47146779 A>G), RS1000323845 (1:47141515 G>A), RS1000862764 (1:47136944 A>C), RS1000932246 (1:47142834 T>C), RS1001088676 (1:47148316 C>A), RS1001364981 (1:47142476 A>G), RS1001721194 (1:47145798 C>A,T), RS1002035652 (1:47139790 A>G), RS1002506068 (1:47149513 G>C), RS1003427941 (1:47144100 A>G), RS1003924180 (1:47138900 T>C), RS1004930981 (1:47140501 A>G,T), RS1005046152 (1:47140250 T>C,G), RS1006026525 (1:47148905 C>A,T)
Disease associations
OMIM: gene MIM:615341 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): pulmonary disease, chronic obstructive, susceptibility to (MONDO:0100167)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002595_12 | Clozapine-induced agranulocytosis | 2.000000e-06 |
| GCST006249_80 | Serum metabolite levels | 4.000000e-12 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4523986 (PROTEIN FAMILY)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 15,540 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL477772 | PAZOPANIB | 4 | 15,540 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — CYP4 family
ChEMBL bioactivities
16 potent at pChembl≥5 of 17 total, top 16 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.60 | IC50 | 251.2 | nM | CHEMBL601428 |
| 6.16 | IC50 | 700 | nM | CHEMBL3330409 |
| 6.05 | IC50 | 900 | nM | CHEMBL3330410 |
| 5.96 | IC50 | 1100 | nM | CHEMBL2130955 |
| 5.72 | IC50 | 1900 | nM | CHEMBL2130955 |
| 5.60 | IC50 | 2500 | nM | CHEMBL5612347 |
| 5.55 | IC50 | 2800 | nM | CHEMBL2130955 |
| 5.43 | IC50 | 3700 | nM | CHEMBL5406721 |
| 5.43 | IC50 | 3700 | nM | CHEMBL46909 |
| 5.42 | IC50 | 3800 | nM | CHEMBL5418617 |
| 5.41 | IC50 | 3900 | nM | CHEMBL5429178 |
| 5.31 | IC50 | 4900 | nM | CHEMBL2130955 |
| 5.23 | IC50 | 5900 | nM | CHEMBL5406218 |
| 5.22 | IC50 | 6053 | nM | CHEMBL65590 |
| 5.10 | IC50 | 7900 | nM | PAZOPANIB |
| 5.00 | IC50 | 1e+04 | nM | CHEMBL5395150 |
PubChem BioAssay actives
18 with measured affinity, of 466 total; 15 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 8-imidazol-1-yl-5,6,7,8-tetrahydroquinoline | 2022035: Inhibition of CYP450 (unknown origin) | ic50 | 0.0335 | uM |
| N-(4-chlorophenyl)-5-ethyl-N-methyl-3-phenyl-1,2-oxazole-4-carboxamide | 2108148: Inhibition of CYP450 (unknown origin) | ic50 | 0.2512 | uM |
| 2-(dimethylamino)-2-(2-ethylphenyl)-N-[3-(3-sulfamoylphenyl)-1H-indazol-5-yl]acetamide | 2119433: Inhibition of CYP450 (unknown origin) | ic50 | 0.7000 | uM |
| 2-pyrrolidin-1-yl-N-[3-(3-sulfamoylphenyl)-1H-indazol-5-yl]-2-thiophen-3-ylacetamide | 2119433: Inhibition of CYP450 (unknown origin) | ic50 | 0.9000 | uM |
| 2-[4-(trifluoromethyl)phenyl]chromen-4-one | 1860369: Inhibition of CYP450 in human HCT-116 cells assessed as 20-HETE formation in presence of arachidonic acid incubated for 15 mins by multi-enzyme assay based LC-MS/MS analysis | ic50 | 1.1000 | uM |
| 4-N-[(1S)-1,2,3,4-tetrahydronaphthalen-1-yl]-4-N-[[(7R)-5,6,7,8-tetrahydro-1,6-naphthyridin-7-yl]methyl]cyclohexane-1,4-diamine | 2124397: Inhibition of CYP450 (unknown origin) | ic50 | 2.5000 | uM |
| 1-[3-(2,4-dimethoxyphenyl)phenyl]-2,4-dimethoxybenzene | 1973305: Inhibition of CYP450 in pooled human liver microsomes in presence of NADPH measured every 3 mins for 120 mins by fluorescence based analysis | ic50 | 3.7000 | uM |
| 1-[(E)-2-(2,4-dimethoxyphenyl)ethenyl]-3,5-dimethoxybenzene | 1973305: Inhibition of CYP450 in pooled human liver microsomes in presence of NADPH measured every 3 mins for 120 mins by fluorescence based analysis | ic50 | 3.7000 | uM |
| 2,4-bis(3,5-dimethoxyphenyl)pyrimidine | 1973305: Inhibition of CYP450 in pooled human liver microsomes in presence of NADPH measured every 3 mins for 120 mins by fluorescence based analysis | ic50 | 3.8000 | uM |
| 2,5-bis(3,5-dimethoxyphenyl)thiophene | 1973305: Inhibition of CYP450 in pooled human liver microsomes in presence of NADPH measured every 3 mins for 120 mins by fluorescence based analysis | ic50 | 3.9000 | uM |
| 4-[2-(2,4-dimethoxyphenyl)-1,3-thiazol-4-yl]phenol | 1973305: Inhibition of CYP450 in pooled human liver microsomes in presence of NADPH measured every 3 mins for 120 mins by fluorescence based analysis | ic50 | 5.9000 | uM |
| 1-pyridin-4-yl-1a,2,3,7b-tetrahydro-1H-cyclopropa[a]naphthalen-4-ol | 2022025: Inhibition of CYP450 in human liver microsomes | ic50 | 6.0534 | uM |
| (5R)-3-[1-(1H-indol-2-ylmethyl)piperidin-4-yl]-5-(6-methoxyquinolin-4-yl)-1,3-oxazolidin-2-one | 306257: Inhibition of CYP450 | ic50 | 7.9433 | uM |
| 3-[1-[(3,4-dimethylphenyl)methyl]piperidin-4-yl]-5-(6-methoxyquinolin-4-yl)-1,3-oxazolidin-2-one | 306257: Inhibition of CYP450 | ic50 | 10.0000 | uM |
| 1-[3-(3,5-dimethoxyphenyl)phenyl]-3,5-dimethoxybenzene | 1973305: Inhibition of CYP450 in pooled human liver microsomes in presence of NADPH measured every 3 mins for 120 mins by fluorescence based analysis | ic50 | 10.0000 | uM |
CTD chemical–gene interactions
15 total (human), top 15 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| perfluorooctanoic acid | decreases expression, increases expression | 3 |
| perfluorooctane sulfonic acid | decreases expression, increases expression | 2 |
| Benzo(a)pyrene | increases methylation, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| methyleugenol | decreases expression | 1 |
| bisphenol A | decreases methylation | 1 |
| senkirkine | decreases expression | 1 |
| VX-agent | decreases expression | 1 |
| heliotrine | decreases expression | 1 |
| fipronil | affects cotreatment, decreases expression | 1 |
| DEET | decreases expression, affects cotreatment | 1 |
| Fenofibrate | increases expression | 1 |
| Pyrrolizidine Alkaloids | decreases expression | 1 |
| Palmitic Acid | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
ChEMBL screening assays
183 unique, capped per target: 181 admet, 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2060324 | ADMET | Inhibition of CYP450 | Rapid identification of ETP-46992, orally bioavailable PI3K inhibitor, selective versus mTOR. — Bioorg Med Chem Lett |
| CHEMBL4614611 | Binding | Drug metabolism in human liver microsomes assessed as Cytochrome P450-mediated formation of 12-OHNVP by measuring Kcat/Km ratio in presence of NADPH regenerating reagents by uHPLC-MS/MS analysis | Twelfth-Position Deuteration of Nevirapine Reduces 12-Hydroxy-Nevirapine Formation and Nevirapine-Induced Hepatocyte Death. — J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): pulmonary disease, chronic obstructive, susceptibility to