DAB2IP
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Also known as AF9Q34DIP1/2KIAA1743AIP1
Summary
DAB2IP (DAB2 interacting protein, HGNC:17294) is a protein-coding gene on chromosome 9q33.2, encoding Disabled homolog 2-interacting protein (Q5VWQ8). Functions as a scaffold protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways.
DAB2IP is a Ras (MIM 190020) GTPase-activating protein (GAP) that acts as a tumor suppressor. The DAB2IP gene is inactivated by methylation in prostate and breast cancers (Yano et al., 2005 [PubMed 15386433]).
Source: NCBI Gene 153090 — RefSeq curated summary.
At a glance
- GWAS associations: 26
- Clinical variants (ClinVar): 224 total
- Phenotypes (HPO): 1
- Druggable target: yes
- MANE Select transcript:
NM_001395010
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17294 |
| Approved symbol | DAB2IP |
| Name | DAB2 interacting protein |
| Location | 9q33.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | AF9Q34, DIP1/2, KIAA1743, AIP1 |
| Ensembl gene | ENSG00000136848 |
| Ensembl biotype | protein_coding |
| OMIM | 609205 |
| Entrez | 153090 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 7 protein_coding, 3 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000259371, ENST00000309989, ENST00000408936, ENST00000436835, ENST00000459906, ENST00000465078, ENST00000487716, ENST00000489314, ENST00000648444, ENST00000648693, ENST00000699487
RefSeq mRNA: 3 — MANE Select: NM_001395010
NM_001395010, NM_032552, NM_138709
CCDS: CCDS6832, CCDS6833, CCDS94477
Canonical transcript exons
ENST00000408936 — 16 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001578649 | 121776198 | 121776391 |
| ENSE00001579823 | 121766494 | 121766730 |
| ENSE00001580667 | 121772607 | 121773495 |
| ENSE00001580761 | 121774260 | 121774412 |
| ENSE00001581915 | 121768432 | 121768633 |
| ENSE00001584858 | 121759885 | 121760439 |
| ENSE00001588943 | 121770546 | 121770724 |
| ENSE00001670649 | 121699325 | 121699458 |
| ENSE00001717577 | 121758898 | 121758996 |
| ENSE00001745749 | 121781464 | 121781551 |
| ENSE00001935432 | 121782331 | 121785530 |
| ENSE00003493254 | 121763505 | 121763649 |
| ENSE00003500573 | 121757013 | 121757166 |
| ENSE00003515800 | 121763735 | 121763879 |
| ENSE00003687903 | 121678678 | 121678781 |
| ENSE00003978126 | 121651634 | 121651899 |
Expression profiles
Bgee: expression breadth ubiquitous, 254 present calls, max score 98.00.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 11.8554 / max 352.7194, expressed in 1461 samples.
FANTOM5 promoters (15 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 98382 | 3.2888 | 798 |
| 98384 | 2.5057 | 1030 |
| 98393 | 1.6628 | 767 |
| 98386 | 0.9383 | 638 |
| 98374 | 0.7208 | 271 |
| 98385 | 0.6693 | 397 |
| 98387 | 0.4742 | 260 |
| 98375 | 0.4016 | 273 |
| 98383 | 0.3751 | 181 |
| 98378 | 0.1913 | 91 |
Top tissues by expression
264 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right hemisphere of cerebellum | UBERON:0014890 | 98.00 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 97.99 | gold quality |
| cerebellar cortex | UBERON:0002129 | 97.93 | gold quality |
| cerebellum | UBERON:0002037 | 97.71 | gold quality |
| apex of heart | UBERON:0002098 | 94.21 | gold quality |
| ileal mucosa | UBERON:0000331 | 94.00 | gold quality |
| right coronary artery | UBERON:0001625 | 93.71 | gold quality |
| sural nerve | UBERON:0015488 | 92.99 | gold quality |
| putamen | UBERON:0001874 | 92.93 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 92.76 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 92.46 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 92.33 | gold quality |
| thoracic aorta | UBERON:0001515 | 92.20 | gold quality |
| ascending aorta | UBERON:0001496 | 92.16 | gold quality |
| aorta | UBERON:0000947 | 92.08 | gold quality |
| popliteal artery | UBERON:0002250 | 92.07 | gold quality |
| tibial artery | UBERON:0007610 | 92.06 | gold quality |
| metanephros cortex | UBERON:0010533 | 92.05 | gold quality |
| cerebellar vermis | UBERON:0004720 | 91.97 | gold quality |
| body of uterus | UBERON:0009853 | 91.87 | gold quality |
| tibialis anterior | UBERON:0001385 | 91.84 | silver quality |
| caudate nucleus | UBERON:0001873 | 91.82 | gold quality |
| right frontal lobe | UBERON:0002810 | 91.68 | gold quality |
| transverse colon | UBERON:0001157 | 91.54 | gold quality |
| oviduct epithelium | UBERON:0004804 | 91.49 | gold quality |
| kidney epithelium | UBERON:0004819 | 91.42 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 91.37 | gold quality |
| lower esophagus | UBERON:0013473 | 91.36 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 91.20 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 91.13 | silver quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.96 |
| E-ENAD-27 | yes | 6.13 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
3 targets.
| Target | Regulation |
|---|---|
| KIT | Repression |
| PROX1 | Repression |
| ZEB1 | Repression |
Upstream regulators (CollecTRI, top): EED, EZH2, SUZ12
miRNA regulators (miRDB)
187 targeting DAB2IP, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-10401-5P | 99.99 | 65.79 | 948 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-96-5P | 99.95 | 72.80 | 2140 |
Literature-anchored findings (GeneRIF, showing 40)
- Normal prostatic epithelial cells have elevated DAB2IP mRNA compared with cancer cells, which correlates with increased DAB2IP promoter activity. (PMID:11944990)
- Epigenetic regulation of this novel tumor suppressor gene in prostate cancer cell lines. (PMID:12446720)
- hDAB2IP methylation frequently is present in breast cancer and plays a key role in hDAB2IP inactivation. (PMID:15041729)
- AIP1 is a novel transducer in TNF-induced TRAF2-dependent activation of ASK1 that mediates a balance between JNK versus NF-kappaB signaling (PMID:15310755)
- Our results demonstrate that hDAB2IP methylation is frequently present in lung cancers and plays a key role in hDAB2IP silencing. (PMID:15386433)
- hDAB2IP gene is a target gene of Ezh2 in prostatic epithelium, which provides an underlying mechanism of the down-regulation of hDAB2IP gene in prostate cancer (PMID:15817459)
- promoter methylation of the hDAB2IP gene is involved in the progression of urinary bladder transitional cell carcinoma from a low to a high malignant potential (PMID:16328005)
- Analysis of SNPs indicated that one, rs1571801, located in the DAB2IP gene, which encodes a novel Ras GTPase-activating protein and putative prostate tumor suppressor, was associated with aggressive prostate cancer. (PMID:18073375)
- PP2A and DAB2IP cooperatively induce activation of ASK1-JNK signaling and vascular endothelial cell apoptosis. (PMID:18292600)
- Data show that DAB2IP is a potent growth inhibitor by inducing G(0)/G(1) cell cycle arrest and is proapoptotic in response to stress, and that DAB2IP can suppress the PI3K-Akt pathway and enhance ASK1 activation leading to cell apoptosis. (PMID:19903888)
- Data show that loss of DAB2IP expression repressed E-cadherin and increased vimentin in both normal prostate epithelial and prostate carcinoma cells as well as in clinical prostate-cancer specimens. (PMID:20080667)
- functions as a signaling scaffold that coordinately regulates Ras and NF-kappaB through distinct domains to promote prostate cancer growth and metastasis (PMID:20154697)
- the A allele of rs7025486 on 9q33 was found to associate with abdominal aortic aneurysms; Rs7025486 is located within DAB2IP (PMID:20622881)
- A sequence variant in DAB2IP on chromosome 9 is associated with coronary heart disease (PMID:21444365)
- the 97906A variant genotypes are associated with the increased risk and early onset of lung cancer, particularly in males. (PMID:22046421)
- Low expression of DAB2IP contributes to malignant development and poor prognosis in hepatocellular carcinoma. (PMID:22168621)
- Studies indicate that DAB2IP and EZH2 are inversely expressed in medulloblastoma. (PMID:22696229)
- Both internalization and ASK1-interacting protein-1 association are required for TNFR2-dependent JNK and apoptotic signaling in endothelial cells. (PMID:22743059)
- Our results for the first time provided new insight into susceptibility factors of hDAB2IP gene variants in carcinogenesis of gastric cancer. (PMID:23246699)
- In this study, we show a novel function of DAB2IP in suppressing radiation-induced and DNA-PKcs-associated autophagy and promoting apoptosis in prostate cancer cells. (PMID:23308052)
- DAB2IP expression was reduced in patients with pancreatic cancer compared with those with no cancer. DAB2IP expression was correlated with the KRAS gene, perineurial invasion and clinical stage of the disease. (PMID:23558076)
- DAB2IP is a unique intrinsic androgen receptor modulator in normal cells, and likely can be further developed into a therapeutic agent for rpostate cancer. (PMID:23604126)
- This study unveils a new regulation of the Egr-1/Clusterin signaling network by DAB2IP. Loss of DAB2IP expression in CRPC cells signifies their chemoresistance (PMID:23838317)
- Human lymphatic endothelial cells with AIP1 small interfering RNA knockdown show attenuated VEGF-C-induced VEGFR-3 signaling. (PMID:24407031)
- downregulation of DAB2IP is associated with features of biologically aggressive urothelial carcinoma of the bladder and results in cell proliferation, migration, and invasion of bladder cancer. (PMID:24684735)
- our data indicate that a variety of pathways may pass through DAB2IP to govern cancer development (PMID:24912918)
- An inverse correlation between CD117 or ZEB1 and DAB2IP is also found in clinical specimens. (PMID:25043300)
- Immunohistochemical study exhibited an inverse correlation between DAB2IP and Skp2 protein expression in the prostate cancer tissue microarray. (PMID:25115390)
- Study showed that DAB2IP can be functionally inactivated by physical interaction with mutant p53 proteins with implications for the response of cancer cells to inflammatory cytokines. (PMID:25454946)
- strongly expressed in villi and extravillous trophoblasts but not in pre-eclampsia placentas (PMID:25604087)
- High glucose increases AIP1 expression and decreases the expression of HIF-1alpha and downstream molecules. Decreased HIF-1alpha signaling may be regulated by increased AIP1 under high glucose. (PMID:26021979)
- Snail and DAB2IP interact to regulate EMT, invasion and metastasis in colorectal cancer (PMID:26336990)
- DAB2IP could inhibit the phosphorylation and transactivation of STAT3, and then subsequently suppress the expression of Twist1 and its target gene P-glycoprotein, both of which were crucial for the pirarubicin chemoresistance. (PMID:26410305)
- Pretreatment biopsy analysis of DAB2IP identifies subpopulation of high-risk prostate cancer patients with worse survival following radiation therapy (PMID:26471467)
- Data show that colorectal cancer (CRC) patients with lower DAB2 interaction protein (DAB2IP) expression had shorter overall survival time. (PMID:26564738)
- Infiltrating T cells regulate ERbeta/DAB2IP signals in renal cell carcinoma. (PMID:26587829)
- DAB2IP appears to be a new prognostic/predictive marker for metastatic renal cell cancer (mRCC) patients, and its function provides a new insight into the molecular mechanisms of drug resistance to mTOR inhibitors, which also can be used to develop new strategies to overcome drug-resistant mRCC. (PMID:26876207)
- DAB2IP protein levels are higher in bladder cancer than in upper tract urothelial carcinoma and in superficial bladder cancer (PMID:27003158)
- Low DAB2IP expression is associated with neoplasms. (PMID:27036023)
- Data suggest that DAB2IP CpG1 methylation is a practical and repeatable biomarker for renal cell carcinoma (ccRCC), which can provide prognostic value that complements the current staging system. (PMID:27129174)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dab2ipa | ENSDARG00000069484 |
| danio_rerio | dab2ipb | ENSDARG00000075110 |
| mus_musculus | Dab2ip | ENSMUSG00000026883 |
| rattus_norvegicus | Dab2ip | ENSRNOG00000055226 |
| drosophila_melanogaster | raskol | FBGN0261570 |
| caenorhabditis_elegans | WBGENE00001516 |
Paralogs (10): RASAL2 (ENSG00000075391), RASAL3 (ENSG00000105122), RASA4 (ENSG00000105808), RASAL1 (ENSG00000111344), RASA1 (ENSG00000145715), RASA2 (ENSG00000155903), RASA4B (ENSG00000170667), RASA3 (ENSG00000185989), NF1 (ENSG00000196712), SYNGAP1 (ENSG00000197283)
Protein
Protein identifiers
Disabled homolog 2-interacting protein — Q5VWQ8 (reviewed: Q5VWQ8)
Alternative names: ASK-interacting protein 1, DOC-2/DAB-2 interactive protein
All UniProt accessions (6): A0A3B3ITC7, A0A3B3ITG3, A0A3B3IUB7, A0A8V8TNA8, Q5VWQ8, F6R503
UniProt curated annotations — full annotation on UniProt →
Function. Functions as a scaffold protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Involved in several processes such as innate immune response, inflammation and cell growth inhibition, apoptosis, cell survival, angiogenesis, cell migration and maturation. Also plays a role in cell cycle checkpoint control; reduces G1 phase cyclin levels resulting in G0/G1 cell cycle arrest. Mediates signal transduction by receptor-mediated inflammatory signals, such as the tumor necrosis factor (TNF), interferon (IFN) or lipopolysaccharide (LPS). Modulates the balance between phosphatidylinositol 3-kinase (PI3K)-AKT-mediated cell survival and apoptosis stimulated kinase (MAP3K5)-JNK signaling pathways; sequesters both AKT1 and MAP3K5 and counterbalances the activity of each kinase by modulating their phosphorylation status in response to pro-inflammatory stimuli. Acts as a regulator of the endoplasmic reticulum (ER) unfolded protein response (UPR) pathway; specifically involved in transduction of the ER stress-response to the JNK cascade through ERN1. Mediates TNF-induced apoptosis activation by facilitating dissociation of inhibitor 14-3-3 from MAP3K5; recruits the PP2A phosphatase complex which dephosphorylates MAP3K5 on ‘Ser-966’, leading to the dissociation of 13-3-3 proteins and activation of the MAP3K5-JNK signaling pathway in endothelial cells. Also mediates TNF/TRAF2-induced MAP3K5-JNK activation, while it inhibits CHUK-NF-kappa-B signaling. Acts a negative regulator in the IFN-gamma-mediated JAK-STAT signaling cascade by inhibiting smooth muscle cell (VSMCs) proliferation and intimal expansion, and thus, prevents graft arteriosclerosis (GA). Acts as a GTPase-activating protein (GAP) for the ADP ribosylation factor 6 (ARF6), Ras and RAB40C. Promotes hydrolysis of the ARF6-bound GTP and thus, negatively regulates phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent TLR4-TIRAP-MyD88 and NF-kappa-B signaling pathways in endothelial cells in response to lipopolysaccharides (LPS). Binds specifically to phosphatidylinositol 4-phosphate (PtdIns4P) and phosphatidylinositol 3-phosphate (PtdIns3P). In response to vascular endothelial growth factor (VEGFA), acts as a negative regulator of the VEGFR2-PI3K-mediated angiogenic signaling pathway by inhibiting endothelial cell migration and tube formation. In the developing brain, promotes both the transition from the multipolar to the bipolar stage and the radial migration of cortical neurons from the ventricular zone toward the superficial layer of the neocortex in a glial-dependent locomotion process. Probable downstream effector of the Reelin signaling pathway; promotes Purkinje cell (PC) dendrites development and formation of cerebellar synapses. Also functions as a tumor suppressor protein in prostate cancer progression; prevents cell proliferation and epithelial-to-mesenchymal transition (EMT) through activation of the glycogen synthase kinase-3 beta (GSK3B)-induced beta-catenin and inhibition of PI3K-AKT and Ras-MAPK survival downstream signaling cascades, respectively.
Subunit / interactions. On plasma membrane, exists in an inactive form complexed with TNFR1; in response to TNF, dissociates from TNFR1 complex, translocates to cytoplasm and forms part of an intracellular signaling complex comprising TRADD, RIPK1, TRAF2 and MAP3K5. Interacts with DAB1. Interacts (via NPXY motif) with DAB2 (via PID domain). Interacts (via PH domain) with ERN1. Part of a cytoplasmic complex made of HIPK1, DAB2IP and MAP3K5 in response to TNF; this complex formation promotes MAP3K5-JNK activation and subsequent apoptosis. Interacts (via N-terminal domain) with JAK2; the interaction occurs in a IFNG/IFN-gamma-dependent manner and inhibits JAK2 autophosphorylation activity. Interacts (via C2 domain) with GSK3B; the interaction stimulates GSK3B kinase activation. Interacts (via C2 domain) with PPP2CA. Interacts (via proline-rich motif) with a regulatory p85 subunit (via SH3 domain) of the PI3K complex; the interaction inhibits the PI3K-AKT complex activity in a TNF-dependent manner in prostate cancer (PCa) cells. Interacts with AKT1; the interaction is increased in a TNF-induced manner. Interacts (via C2 domain and active form preferentially) with KDR/VEGFR2 (tyrosine-phosphorylated active form preferentially); the interaction occurs at the late phase of VEGFA response and inhibits KDR/VEGFR2 activity. Interacts (via N-terminus C2 domain) with MAP3K5 (‘Ser-966’ dephosphorylated form preferentially); the interaction occurs in a TNF-induced manner. Interacts (via Ras-GAP domain) with the catalytic subunit of protein phosphatase PP2A; the interaction occurs in resting endothelial cells, is further enhanced by TNF stimulation and is required to bridge PP2A to MAP3K5. Interacts (via C-terminus PER domain) with TRAF2 (via zinc fingers); the interaction occurs in a TNF-dependent manner. Interacts with 14-3-3 proteins; the interaction occurs in a TNF-dependent manner. Interacts (via Ras-GAP domain) with RIPK1 (via kinase domain); the interaction occurs in a TNF-dependent manner. Interacts with RAB40C; acts as a GAP for RAB40C.
Subcellular location. Cytoplasm. Cell membrane. Membrane. Cell projection. Dendrite.
Tissue specificity. Expressed in endothelial and vascular smooth muscle cells (VSMCs). Expressed in prostate epithelial but poorly in prostate cancer cells. Poorly expressed in medulloblastoma cells compared to cerebellar precursor proliferating progenitor cells (at protein level). Low expression in prostate. Down-regulated in prostate cancer.
Post-translational modifications. In response to TNF-induction, phosphorylated at Ser-728; phosphorylation leads to a conformational change, and thus, increases its association with 14-3-3 proteins, MAP3K5, RIPK1 and TRAF2 in endothelial cells; also stimulates regulatory p85 subunit sequestring and PI3K-p85 complex activity inhibition.
Disease relevance. A chromosomal aberration involving DAB2IP is found in a patient with acute myeloid leukemia (AML). Translocation t(9;11)(q34;q23) with KMT2A/MLL1. May give rise to a KMT2A/MLL1-DAB2IP fusion protein lacking the PH domain.
Domain organisation. The C2 and Ras-GAP domains constitutively bind to MAP3K5 and facilitate the release of 14-3-3 proteins from MAP3K5. The PH and Ras-GAP domains, but not the NPXY motif, are crucial for its cell membrane localization and neuronal migration function. The PH domain is necessary but not sufficient to activate the JNK signaling pathway through ERN1. Exists in a closed inactive form by an intramolecular interaction between the N- and the C-terminal domains. The proline-rich motif is critical both for PI3K-AKT activity inhibition and MAP3K5 activation. The PH and C2 domains are necessary for the binding to phosphatidylinositol phosphate. The Ras-GAP domain is necessary for its tumor-suppressive function.
Induction. Down-regulated in prostate cancer and medulloblastoma.
Miscellaneous. The DAB2IP gene is found epigenetically silenced in numerous aggressive cancers, like prostate cancers and medulloblastoma tumors. Epigenetic suppression of DAB2IP by EZH2 is a major mechanism of DAB2IP inactivation in human prostate cancer and increases metastatic potential.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q5VWQ8-1 | 1 | yes |
| Q5VWQ8-2 | 2 | |
| Q5VWQ8-3 | 3 | |
| Q5VWQ8-4 | 4 | |
| Q5VWQ8-5 | 5 |
RefSeq proteins (3): NP_001381939, NP_115941, NP_619723 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000008 | C2_dom | Domain |
| IPR001849 | PH_domain | Domain |
| IPR001936 | RasGAP_dom | Domain |
| IPR008936 | Rho_GTPase_activation_prot | Homologous_superfamily |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR021887 | DAB2P_C | Domain |
| IPR023152 | RasGAP_CS | Conserved_site |
| IPR035892 | C2_domain_sf | Homologous_superfamily |
| IPR039360 | Ras_GTPase | Family |
| IPR057606 | SynGAP1-like_PH | Domain |
Pfam: PF00168, PF00616, PF12004, PF25321
UniProt features (44 total): compositionally biased region 10, region of interest 9, mutagenesis site 6, modified residue 4, splice variant 4, domain 3, sequence conflict 3, site 2, chain 1, coiled-coil region 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q5VWQ8-F1 | 65.74 | 0.36 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 172–173 (breakpoint for translocation to form kmt2a/mll1-dab2ip); 413 (arginine finger; crucial for gtp hydrolysis by stabilizing the transition state)
Post-translational modifications (4): 728, 747, 978, 995
Mutagenesis-validated functional residues (6):
| Position | Phenotype |
|---|---|
| 228–230 | reduces interaction with kdr/vegfr2. does not inhibit interaction with map3k5. |
| 281–284 | significantly reduces interaction with map3k5. does not reduce interaction with kdr/vegfr2. |
| 413 | decreased gap activity toward rab40c. does not inhibit interaction with map3k5. does not reduce gsk3b-induced beta-caten |
| 728 | inhibits phosphorylation and tnf-induced map3k5 dephosphorylation. reduces interaction with 14-3-3 proteins, akt1, a reg |
| 920–929 | reduces interaction with a regulatory p85 subunit of the pi3k complex. inhibits map3k5 active form increase, akt1 active |
| 935 | does not reduce interaction with 14-3-3 proteins. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-5658442 | Regulation of RAS by GAPs |
MSigDB gene sets: 0 (showing top):
GO Biological Process (67): negative regulation of transcription by RNA polymerase II (GO:0000122), angiogenesis (GO:0001525), inflammatory response (GO:0006954), negative regulation of cell population proliferation (GO:0008285), extrinsic apoptotic signaling pathway via death domain receptors (GO:0008625), negative regulation of endothelial cell migration (GO:0010596), negative regulation of epithelial cell migration (GO:0010633), negative regulation of epithelial to mesenchymal transition (GO:0010719), positive regulation of neuron projection development (GO:0010976), negative regulation of angiogenesis (GO:0016525), cell motility involved in cerebral cortex radial glia guided migration (GO:0021814), layer formation in cerebral cortex (GO:0021819), protein catabolic process (GO:0030163), negative regulation of vascular endothelial growth factor receptor signaling pathway (GO:0030948), positive regulation of protein-containing complex assembly (GO:0031334), tumor necrosis factor-mediated signaling pathway (GO:0033209), negative regulation of toll-like receptor 4 signaling pathway (GO:0034144), negative regulation of GTPase activity (GO:0034260), cellular response to unfolded protein (GO:0034620), tube formation (GO:0035148), intracellular signal transduction (GO:0035556), cellular response to vascular endothelial growth factor stimulus (GO:0035924), vascular endothelial growth factor receptor-2 signaling pathway (GO:0036324), negative regulation of epidermal growth factor receptor signaling pathway (GO:0042059), negative regulation of protein catabolic process (GO:0042177), positive regulation of apoptotic process (GO:0043065), regulation of GTPase activity (GO:0043087), regulation of canonical NF-kappaB signal transduction (GO:0043122), positive regulation of canonical NF-kappaB signal transduction (GO:0043123), negative regulation of canonical NF-kappaB signal transduction (GO:0043124), regulation of protein-containing complex assembly (GO:0043254), negative regulation of MAPK cascade (GO:0043409), positive regulation of MAPK cascade (GO:0043410), innate immune response (GO:0045087), positive regulation of protein catabolic process (GO:0045732), negative regulation of DNA-templated transcription (GO:0045892), positive regulation of transcription by RNA polymerase II (GO:0045944), positive regulation of JNK cascade (GO:0046330), negative regulation of Ras protein signal transduction (GO:0046580), negative regulation of fibroblast proliferation (GO:0048147)
GO Molecular Function (21): GTPase activator activity (GO:0005096), death receptor binding (GO:0005123), SH3 domain binding (GO:0017124), kinase binding (GO:0019900), protein kinase binding (GO:0019901), mitogen-activated protein kinase kinase binding (GO:0031434), mitogen-activated protein kinase kinase kinase binding (GO:0031435), phosphatidylinositol-3-phosphate binding (GO:0032266), signaling adaptor activity (GO:0035591), phosphatidylinositol 3-kinase regulatory subunit binding (GO:0036312), identical protein binding (GO:0042802), protein homodimerization activity (GO:0042803), vascular endothelial growth factor receptor 2 binding (GO:0043184), protein serine/threonine kinase activator activity (GO:0043539), phosphatidylinositol 3-kinase binding (GO:0043548), protein-containing complex binding (GO:0044877), cadherin binding (GO:0045296), protein phosphatase 2A binding (GO:0051721), phosphatidylinositol-4-phosphate binding (GO:0070273), 14-3-3 protein binding (GO:0071889), protein binding (GO:0005515)
GO Cellular Component (14): cytoplasm (GO:0005737), cytosol (GO:0005829), plasma membrane (GO:0005886), membrane (GO:0016020), endocytic vesicle (GO:0030139), axon (GO:0030424), dendrite (GO:0030425), neuronal cell body membrane (GO:0032809), neuronal cell body (GO:0043025), cerebellar mossy fiber (GO:0044300), climbing fiber (GO:0044301), parallel fiber (GO:1990032), AIP1-IRE1 complex (GO:1990597), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| RAF/MAP kinase cascade | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| anatomical structure formation involved in morphogenesis | 3 |
| protein binding | 3 |
| axon | 3 |
| negative regulation of cell migration | 2 |
| negative regulation of multicellular organismal process | 2 |
| cerebral cortex radial glia-guided migration | 2 |
| negative regulation of signal transduction | 2 |
| GTPase activity | 2 |
| protein kinase binding | 2 |
| phosphatidylinositol phosphate binding | 2 |
| neuron projection | 2 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| negative regulation of DNA-templated transcription | 1 |
| blood vessel morphogenesis | 1 |
| defense response | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| extrinsic apoptotic signaling pathway | 1 |
| regulation of endothelial cell migration | 1 |
| endothelial cell migration | 1 |
| epithelial cell migration | 1 |
| regulation of epithelial cell migration | 1 |
| epithelial to mesenchymal transition | 1 |
| regulation of epithelial to mesenchymal transition | 1 |
| negative regulation of cell differentiation | 1 |
| regulation of neuron projection development | 1 |
| neuron projection development | 1 |
| positive regulation of cell projection organization | 1 |
| angiogenesis | 1 |
| regulation of angiogenesis | 1 |
| negative regulation of blood vessel morphogenesis | 1 |
| cell motility | 1 |
| macromolecule catabolic process | 1 |
| protein metabolic process | 1 |
| regulation of vascular endothelial growth factor receptor signaling pathway | 1 |
| vascular endothelial growth factor receptor signaling pathway | 1 |
| negative regulation of cellular response to growth factor stimulus | 1 |
Protein interactions and networks
STRING
1468 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DAB2IP | DAB2 | P98082 | 989 |
| DAB2IP | MAP3K5 | Q99683 | 804 |
| DAB2IP | EZH2 | Q15910 | 749 |
| DAB2IP | SUZ12 | Q15022 | 645 |
| DAB2IP | TP53 | P04637 | 624 |
| DAB2IP | AKT1 | P31749 | 577 |
| DAB2IP | LXN | Q9BS40 | 556 |
| DAB2IP | H3C1 | P02295 | 509 |
| DAB2IP | GSK3B | P49841 | 508 |
| DAB2IP | H3-4 | Q16695 | 508 |
| DAB2IP | H3-7 | Q5TEC6 | 508 |
| DAB2IP | H3-5 | Q6NXT2 | 508 |
| DAB2IP | H3C14 | Q71DI3 | 508 |
| DAB2IP | H3-3A | P06351 | 506 |
| DAB2IP | CUL1 | Q13616 | 491 |
IntAct
60 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CSNK1A1 | FAM83G | psi-mi:“MI:0914”(association) | 0.900 |
| YWHAH | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.610 |
| YWHAE | SRSF10 | psi-mi:“MI:0914”(association) | 0.560 |
| IWS1 | SUPT5H | psi-mi:“MI:0914”(association) | 0.530 |
| YWHAZ | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM9 | ESYT2 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC31A1 | C2orf72 | psi-mi:“MI:0914”(association) | 0.530 |
| RFPL3 | RFPL1 | psi-mi:“MI:0914”(association) | 0.530 |
| ANKRD22 | ESYT2 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC30A4 | OPA1 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC31A1 | PRORP | psi-mi:“MI:0914”(association) | 0.530 |
| DAB2IP | MAP3K5 | psi-mi:“MI:0915”(physical association) | 0.510 |
| DAB2IP | DAB2IP | psi-mi:“MI:1126”(self interaction) | 0.440 |
| DAB2IP | GSK3B | psi-mi:“MI:0915”(physical association) | 0.400 |
| DAB2IP | MAP3K5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| DAB2IP | SMARCA2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| Cep152 | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.350 |
| Shoc2 | GABPB1 | psi-mi:“MI:0914”(association) | 0.350 |
| Mis12 | psi-mi:“MI:0914”(association) | 0.350 | |
| Cdk1 | IFT88 | psi-mi:“MI:0914”(association) | 0.350 |
| RNASEH2B | SAP18 | psi-mi:“MI:0914”(association) | 0.350 |
| RAB4B | NSF | psi-mi:“MI:0914”(association) | 0.350 |
| EXOSC9 | MPHOSPH6 | psi-mi:“MI:0914”(association) | 0.350 |
| UGGT1 | SF3B1 | psi-mi:“MI:0914”(association) | 0.350 |
| Xpo1 | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAB | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAG | C1orf226 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (127): DAB2IP (Affinity Capture-MS), DAB2IP (Affinity Capture-MS), MAP3K5 (Affinity Capture-Western), DAB2IP (Affinity Capture-Western), DAB2IP (Affinity Capture-MS), DAB2IP (Affinity Capture-MS), DAB2IP (Affinity Capture-MS), DAB2IP (Affinity Capture-MS), DAB2IP (Affinity Capture-MS), DAB2IP (Affinity Capture-MS), DAB2IP (Affinity Capture-MS), DAB2IP (Affinity Capture-MS), DAB2IP (Affinity Capture-MS), DAB2IP (Affinity Capture-MS), MAP3K5 (Affinity Capture-Western)
ESM2 similar proteins: A0A0G2JUG7, A1L390, E9Q0S6, O08774, O14924, O15085, O43182, O54834, O54960, O60307, O75052, P57095, Q13009, Q3U1V8, Q3U214, Q3UHC7, Q4VAC9, Q5DU25, Q5JU85, Q5RBI7, Q5SXA9, Q5VWQ8, Q60610, Q64512, Q6AX33, Q6DN90, Q6NXJ0, Q6P0Q8, Q6P1I6, Q6ZMN7, Q76G19, Q76LL6, Q76M68, Q7T2V3, Q810W7, Q8CGE9, Q8IX03, Q8R0S2, Q8R4H2, Q8WYP3
Diamond homologs: A6QQ91, F6SEU4, P48423, P97526, Q14644, Q15283, Q28013, Q3UHC7, Q54Y08, Q5VWQ8, Q60790, Q6P730, Q86YV0, Q8C2K5, Q8MLZ5, Q8T498, Q96PV0, Q9QUH6, Q9QYJ2, Q9UJF2, Q9Z268, P58069, Q63713, O95294, P09851, P18963, P20936, P50904, P21359, P35608, Q04690, P33277, A1ZBD6, A2X479, B8XCH5, C9J798, K8FE10, O43374, O49435, P27715
SIGNOR signaling
29 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| DAB2 | “up-regulates activity” | DAB2IP | binding |
| DAB2IP | “down-regulates activity” | HRAS | “gtpase-activating protein” |
| DAB2IP | “down-regulates activity” | KRAS | “gtpase-activating protein” |
| DAB2IP | “down-regulates activity” | NRAS | “gtpase-activating protein” |
| DAB2IP | “up-regulates activity” | MAP3K5 | binding |
| DAB2IP | “up-regulates activity” | ERN1 | binding |
| DAB2IP | “down-regulates activity” | PIK3CA | binding |
| DAB2IP | “down-regulates activity” | AKT | binding |
| DAB2IP | “up-regulates activity” | GSK3B | binding |
| DAB2IP | “up-regulates activity” | PP2Ca_R1A_Bd | binding |
| DAB2IP | “down-regulates activity” | PIK3R1 | binding |
| DAB2IP | “down-regulates activity” | AR | binding |
| DAB2IP | “down-regulates activity” | JAK2 | binding |
| DAB2IP | “down-regulates activity” | STAT3 | binding |
| RIPK1 | “up-regulates activity” | DAB2IP | phosphorylation |
| DAB2IP | “down-regulates quantity by repression” | PROX1 | “transcriptional regulation” |
| DAB2IP | “down-regulates quantity by destabilization” | HIF1A | |
| DAB2IP | “down-regulates quantity by repression” | KIT | “transcriptional regulation” |
| DAB2IP | “up-regulates activity” | GATA1 | binding |
| DAB2IP | “down-regulates quantity by repression” | ZEB1 | “transcriptional regulation” |
| DAB2IP | “down-regulates activity” | 14-3-3 | binding |
| FBXW7 | “down-regulates quantity by destabilization” | DAB2IP | ubiquitination |
| SKP2 | “down-regulates quantity by destabilization” | DAB2IP | ubiquitination |
| SMURF1 | “down-regulates quantity by destabilization” | DAB2IP | ubiquitination |
| DAB2IP | down-regulates | Cell_migration | |
| DAB2IP | down-regulates | Survival | |
| AKT1 | “down-regulates activity” | DAB2IP | phosphorylation |
| DAB2IP | “down-regulates quantity” | CTNNB1 | relocalization |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 78 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Activation of BAD and translocation to mitochondria | 5 | 82.8× | 4e-07 |
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 5 | 73.0× | 4e-07 |
| SARS-CoV-1 targets host intracellular signalling and regulatory pathways | 5 | 73.0× | 4e-07 |
| Activation of BH3-only proteins | 5 | 54.0× | 2e-06 |
| RHO GTPases activate PKNs | 5 | 34.5× | 1e-05 |
| Intrinsic Pathway for Apoptosis | 5 | 31.8× | 1e-05 |
| Transcriptional and post-translational regulation of MITF-M expression and activity | 7 | 27.1× | 4e-07 |
| Apoptosis | 6 | 21.9× | 1e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| intracellular protein localization | 6 | 9.7× | 8e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
224 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 187 |
| Likely benign | 9 |
| Benign | 7 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
4715 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:121567225:TACGG:T | donor_loss | 1.0000 |
| 9:121567227:CGGT:C | donor_loss | 1.0000 |
| 9:121567229:GT:G | donor_loss | 1.0000 |
| 9:121567230:T:A | donor_loss | 1.0000 |
| 9:121699323:AG:A | acceptor_gain | 1.0000 |
| 9:121699324:GG:G | acceptor_gain | 1.0000 |
| 9:121757166:GGTG:G | donor_loss | 1.0000 |
| 9:121757167:G:GC | donor_loss | 1.0000 |
| 9:121757168:T:G | donor_loss | 1.0000 |
| 9:121758893:CACA:C | acceptor_loss | 1.0000 |
| 9:121758894:ACAG:A | acceptor_gain | 1.0000 |
| 9:121758895:C:G | acceptor_gain | 1.0000 |
| 9:121758896:A:AG | acceptor_gain | 1.0000 |
| 9:121758896:AG:A | acceptor_gain | 1.0000 |
| 9:121758896:AGGT:A | acceptor_gain | 1.0000 |
| 9:121758897:G:GT | acceptor_gain | 1.0000 |
| 9:121758897:GG:G | acceptor_gain | 1.0000 |
| 9:121758897:GGT:G | acceptor_gain | 1.0000 |
| 9:121758897:GGTG:G | acceptor_gain | 1.0000 |
| 9:121758897:GGTGA:G | acceptor_gain | 1.0000 |
| 9:121758997:G:GG | donor_gain | 1.0000 |
| 9:121758998:T:G | donor_loss | 1.0000 |
| 9:121759874:T:TA | acceptor_gain | 1.0000 |
| 9:121759878:C:G | acceptor_gain | 1.0000 |
| 9:121759879:A:AG | acceptor_gain | 1.0000 |
| 9:121759881:ACAG:A | acceptor_gain | 1.0000 |
| 9:121759882:CAG:C | acceptor_loss | 1.0000 |
| 9:121759883:A:AG | acceptor_gain | 1.0000 |
| 9:121759883:AG:A | acceptor_gain | 1.0000 |
| 9:121759883:AGGAC:A | acceptor_loss | 1.0000 |
AlphaMissense
7744 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:121757137:A:C | S163R | 1.000 |
| 9:121757139:C:A | S163R | 1.000 |
| 9:121757139:C:G | S163R | 1.000 |
| 9:121757161:T:C | F171L | 1.000 |
| 9:121757162:T:C | F171S | 1.000 |
| 9:121757163:C:A | F171L | 1.000 |
| 9:121757163:C:G | F171L | 1.000 |
| 9:121758925:T:C | F182L | 1.000 |
| 9:121758926:T:C | F182S | 1.000 |
| 9:121758927:T:A | F182L | 1.000 |
| 9:121758927:T:G | F182L | 1.000 |
| 9:121758931:T:C | C184R | 1.000 |
| 9:121758932:G:A | C184Y | 1.000 |
| 9:121758933:C:G | C184W | 1.000 |
| 9:121758950:G:C | R190P | 1.000 |
| 9:121758958:T:A | W193R | 1.000 |
| 9:121758958:T:C | W193R | 1.000 |
| 9:121758960:G:C | W193C | 1.000 |
| 9:121758960:G:T | W193C | 1.000 |
| 9:121758971:T:A | L197H | 1.000 |
| 9:121758971:T:C | L197P | 1.000 |
| 9:121758977:G:C | R199P | 1.000 |
| 9:121759913:T:C | L215P | 1.000 |
| 9:121759997:C:A | A243D | 1.000 |
| 9:121760035:T:A | W256R | 1.000 |
| 9:121760035:T:C | W256R | 1.000 |
| 9:121760037:G:C | W256C | 1.000 |
| 9:121760037:G:T | W256C | 1.000 |
| 9:121760048:T:C | F260S | 1.000 |
| 9:121760087:T:A | V273D | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000019029 (9:121606672 G>A,T), RS1000026969 (9:121745635 C>G,T), RS1000029035 (9:121611054 C>T), RS1000057114 (9:121694855 C>T), RS1000060564 (9:121623638 G>T), RS1000067991 (9:121653641 C>T), RS1000082132 (9:121688388 G>A), RS1000086355 (9:121771955 A>G), RS1000105212 (9:121583652 G>A), RS1000121905 (9:121570834 C>G), RS1000132260 (9:121693410 G>A), RS1000150818 (9:121641519 G>A,C), RS1000194239 (9:121569487 G>A), RS1000200883 (9:121646717 A>C), RS1000209597 (9:121777556 T>G)
Disease associations
OMIM: gene MIM:609205 | disease phenotypes: MIM:148300
GenCC curated gene-disease
Mondo (1): keratoconus (MONDO:0015486)
Orphanet (2): OBSOLETE: Keratoconus (Orphanet:156071), NON RARE IN EUROPE: Isolated keratoconus (Orphanet:2335)
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000563 | Keratoconus |
GWAS associations
26 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000727_2 | Abdominal aortic aneurysm | 5.000000e-10 |
| GCST001588_11 | Periodontal microbiota | 5.000000e-07 |
| GCST001859_10 | Thiazide-induced adverse metabolic effects in hypertensive patients | 2.000000e-06 |
| GCST001921_4 | Heart rate | 9.000000e-06 |
| GCST001995_6 | Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel) | 6.000000e-07 |
| GCST002119_17 | Metabolite levels (X-11787) | 9.000000e-06 |
| GCST003877_4 | Abdominal aortic aneurysm | 2.000000e-11 |
| GCST005195_87 | Coronary artery disease | 8.000000e-10 |
| GCST005196_175 | Coronary artery disease | 8.000000e-09 |
| GCST007446_15 | vWF levels | 3.000000e-09 |
| GCST007446_38 | vWF levels | 4.000000e-09 |
| GCST007446_72 | vWF levels | 4.000000e-09 |
| GCST007446_78 | vWF levels | 4.000000e-09 |
| GCST008403_8 | Arterial stiffness index | 5.000000e-06 |
| GCST008835_2 | Squamous cell lung carcinoma | 3.000000e-09 |
| GCST009391_431 | Metabolite levels | 8.000000e-06 |
| GCST010479_11 | Coronary artery disease | 4.000000e-08 |
| GCST010480_6 | Coronary artery disease | 7.000000e-11 |
| GCST010866_138 | Coronary artery disease | 1.000000e-13 |
| GCST011365_100 | Myocardial infarction | 4.000000e-08 |
| GCST012490_288 | Femur bone mineral density x serum urate levels interaction | 4.000000e-09 |
| GCST012490_5 | Femur bone mineral density x serum urate levels interaction | 4.000000e-15 |
| GCST90000025_426 | Appendicular lean mass | 5.000000e-13 |
| GCST90020025_384 | Waist-to-hip ratio adjusted for BMI | 6.000000e-10 |
| GCST90020026_764 | Hip index | 2.000000e-08 |
| GCST90020027_864 | Waist-hip index | 2.000000e-10 |
EFO canonical traits (8, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004530 | triglyceride measurement |
| EFO:0005276 | hydroxy-leucine measurement |
| EFO:0004517 | arterial stiffness measurement |
| EFO:0010384 | phosphatidylcholine 38:2 measurement |
| EFO:0004531 | urate measurement |
| EFO:0004980 | appendicular lean mass |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D007640 | Keratoconus | C11.204.627 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4523330 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
8 potent at pChembl≥5 of 8 total, top 8 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.92 | Kd | 120.5 | nM | CHEMBL4579552 |
| 6.82 | Ki | 150 | nM | CHEMBL4579552 |
| 6.82 | Kd | 151 | nM | CHEMBL4579552 |
| 6.81 | Ki | 155 | nM | CHEMBL4469853 |
| 6.41 | Ki | 390 | nM | CHEMBL4469619 |
| 6.11 | Ki | 779 | nM | CHEMBL1344136 |
| 5.90 | Ki | 1260 | nM | CHEMBL467987 |
| 5.72 | Ki | 1920 | nM | CHEMBL1380684 |
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, decreases methylation, increases expression | 3 |
| bisphenol A | affects methylation, increases expression | 2 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 2 |
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| FR900359 | decreases phosphorylation | 1 |
| dicrotophos | increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases abundance, increases methylation | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| aflatoxin B2 | affects methylation, increases methylation | 1 |
| coumarin | decreases phosphorylation | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
| abrine | decreases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Caffeine | affects phosphorylation | 1 |
| Calcitriol | decreases expression | 1 |
| Chelating Agents | affects binding, decreases expression | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Copper | affects binding, decreases expression | 1 |
| Dactinomycin | affects cotreatment, increases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | decreases expression | 1 |
| Diethylhexyl Phthalate | increases abundance, increases methylation | 1 |
| Ethinyl Estradiol | affects expression | 1 |
| Methapyrilene | increases methylation | 1 |
ChEMBL screening assays
8 unique, capped per target: 8 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4417843 | Binding | Binding affinity to human Dab2 DH domain (33 to 191 residues) expressed in Escherichia coli BL21 (DE3) RIL cells pre-incubated for 10 to 15 mins before fluorescently labeled peptide addition by fluorescence polarization assay | Dab2 inhibitors for the prevention and treatment of cystic fibrosis |
Clinical trials (associated diseases)
279 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01485211 | PHASE4 | COMPLETED | Corneal Thickness Changes During Corneal Collagen Cross-linking With Ultraviolet-A Irradiation and Riboflavin |
| NCT02119039 | PHASE4 | COMPLETED | Effect of CACICOL20 on Corneal Epithelial Healing After Cross-linking in Patients With Keratoconus |
| NCT03245853 | PHASE4 | COMPLETED | Epi-On Corneal Crosslinking for Keratoconus |
| NCT03429569 | PHASE4 | UNKNOWN | Cross-Linking ACcéléré Iontophorèse Confocal kératocONE |
| NCT04427956 | PHASE4 | COMPLETED | Corneal Crosslinking Treatment Study |
| NCT07474870 | PHASE4 | NOT_YET_RECRUITING | Outcomes of CTAK Surgery |
| NCT00371202 | PHASE3 | UNKNOWN | Comparison of Penetrating Keratoplasty and Deep Lamellar Keratoplasty With the Big Bubble Technique for Keratoconus |
| NCT00647699 | PHASE3 | COMPLETED | Corneal Collagen Cross-linking for Progressive Keratoconus |
| NCT00815256 | PHASE3 | UNKNOWN | Safety and Effectiveness of Collagen Cross Linking in Progressive Mild and Moderate Keratoconus |
| NCT00887900 | PHASE3 | COMPLETED | Deep Anterior Lamellar Keratoplasty (DALK) |
| NCT01112072 | PHASE3 | UNKNOWN | Corneal Collagen Crosslinking and Intacs for Keratoconus and Ectasia |
| NCT01152541 | PHASE3 | UNKNOWN | Corneal Collagen Crosslinking for Progressive Keratoconus and Ectasia Using Riboflavin/Dextran and Hypotonic Riboflavin |
| NCT01190306 | PHASE3 | TERMINATED | Safety Study of the VEGA UV-A System to Treat Keratoconus |
| NCT01344187 | PHASE3 | COMPLETED | Safety and Efficacy Study of Corneal Collagen Cross-Linking in Eyes With Keratoconus |
| NCT01459679 | PHASE3 | TERMINATED | Safety & Efficacy of Corneal Collagen Cross-Linking in Eyes With Keratoconus or Corneal Ectasia After Refractive Surgery |
| NCT01464268 | PHASE3 | UNKNOWN | Transepithelial Corneal Collagen Crosslinking for Keratoconus and Corneal Ectasia |
| NCT01604135 | PHASE3 | ACTIVE_NOT_RECRUITING | Collagen Crosslinking for Keratoconus - a Randomized Controlled Clinical Trial |
| NCT01643226 | PHASE3 | COMPLETED | Safety and Efficacy Study of Corneal Collagen Cross-Linking in Eyes With Keratoconus |
| NCT01672814 | PHASE3 | COMPLETED | Microwave Treatment and Corneal Collagen Crosslinking for Keratoconus |
| NCT01682993 | PHASE3 | TERMINATED | Corneal Cross Linking and Topography Guided Excimer Laser Treatment |
| NCT01972854 | PHASE3 | TERMINATED | Safety and Efficacy of Corneal Collagen Cross-Linking in Eyes With Keratoconus |
| NCT02613780 | PHASE3 | UNKNOWN | Refractive Treatment of Early Keratoconus |
| NCT02638376 | PHASE3 | UNKNOWN | Evaluating the Safety and Efficacy of the KXL System for Corneal Collagen Cross-Linking in Eyes Having Keratoconus |
| NCT03080077 | PHASE3 | UNKNOWN | Safety and Effectiveness of Corneal Crosslinking (CXL): Keratoconus and Post-Refractive Ectasia |
| NCT03187912 | PHASE3 | COMPLETED | Accelerated Corneal Cross-linking With Different Riboflavin Solutions |
| NCT03442751 | PHASE3 | COMPLETED | Study to Evaluate the Safety and Efficacy of Epi-on Corneal Cross-linking in Eyes With Progressive Keratoconus |
| NCT03858036 | PHASE3 | UNKNOWN | Corneal Collagen Cross-Linking (CXL) Performed With Epi-ON Versus Epi-OFF in Eyes With Keratoconus and Other Corneal Ectatic Disorders |
| NCT04897503 | PHASE3 | UNKNOWN | Corneal Collagen Crosslinking for Keratoconus and Ectasia Using Riboflavin/Dextran or Riboflavin/Methylcellulose |
| NCT04905108 | PHASE3 | UNKNOWN | Transepithelial (Epi-on) Corneal Collagen Crosslinking to Treat Keratoconus and Corneal Ectasia |
| NCT05027295 | PHASE3 | UNKNOWN | Accelerated Corneal Collagen Crosslinking for Keratoconus and Ectasia Using Pulse or Continuous UV-A Light |
| NCT06100939 | PHASE3 | ACTIVE_NOT_RECRUITING | Epithelium-On Corneal Cross-linking in Subjects 8 to 45 Years of Age With Keratoconus |
| NCT06100952 | PHASE3 | ACTIVE_NOT_RECRUITING | Epithelium-On Corneal Cross-linking in Subjects 8 to 45 Years of Age with Keratoconus |
| NCT06450470 | PHASE3 | RECRUITING | Use of a Freeze-dried Amniotic Membrane Post Crosslinking in Subjects With Progressive Keratoconus |
| NCT06601101 | PHASE3 | RECRUITING | Effects of Topical Insulin on Corneal Epithelium Healing After Corneal Crosslinking in Patients With Keratoconus |
| NCT07124910 | PHASE3 | RECRUITING | Comparison of Epi-ON Corneal Collagen Crosslinking Performed Using an 18-Minute UVA Exposure vs. a 24-Minute UVA Exposure on Eyes With Ectatic Corneal Diseases |
| NCT07135167 | PHASE3 | RECRUITING | Compassionate Use Study of Epi-ON Corneal Collagen Crosslinking Performed Using UVA Exposure on Eyes With Ectatic Corneal Diseases for Subjects With Down Syndrome |
| NCT00409955 | PHASE2 | COMPLETED | Lamellar Transplant With Lyophilized Corneas |
| NCT00925327 | PHASE2 | UNKNOWN | Safety and Effectiveness of the UV-X System for Corneal Collagen Cross-Linking for Compassionate Treatment in Pediatric Patients With Progressive Keratoconus |
| NCT01143389 | PHASE2 | COMPLETED | Corneal Crosslinking in Patients With Keratoconus and Post-Refractive Ectasia |
| NCT01181219 | PHASE2 | COMPLETED | Transepithelial Corneal Collagen Cross-linking (CXL) in Treatment of Keratoconus |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): abdominal aortic aneurysm, keratoconus, myocardial infarction, periodontitis, squamous cell lung carcinoma