DAW1
geneOn this page
Also known as FLJ25955ODA16DNAAF18
Summary
DAW1 (dynein assembly factor with WD repeats 1, HGNC:26383) is a protein-coding gene on chromosome 2q36.3, encoding Dynein assembly factor with WD repeat domains 1 (Q8N136). Required for axonemal dynein assembly and ciliary motility in ciliated organs, including Kupffer’s vesicle, during embryogenesis.
Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in protein polyubiquitination. Predicted to act upstream of with a positive effect on outer dynein arm assembly. Predicted to act upstream of or within with a positive effect on intraciliary transport. Predicted to act upstream of or within several processes, including cerebrospinal fluid circulation; determination of left/right symmetry; and heart development. Predicted to be located in ciliary basal body. Predicted to be part of SCF ubiquitin ligase complex. Implicated in primary ciliary dyskinesia.
Source: NCBI Gene 164781 — RefSeq curated summary.
At a glance
- Gene–disease (curated): ciliary dyskinesia, primary, 52 (Strong, GenCC) — +2 more curated relationships
- GWAS associations: 5
- Clinical variants (ClinVar): 75 total — 5 pathogenic
- Phenotypes (HPO): 64
- MANE Select transcript:
NM_178821
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26383 |
| Approved symbol | DAW1 |
| Name | dynein assembly factor with WD repeats 1 |
| Location | 2q36.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ25955, ODA16, DNAAF18 |
| Ensembl gene | ENSG00000123977 |
| Ensembl biotype | protein_coding |
| OMIM | 620279 |
| Entrez | 164781 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 3 protein_coding, 2 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000309931, ENST00000373666, ENST00000440997, ENST00000454999, ENST00000472604, ENST00000947949
RefSeq mRNA: 2 — MANE Select: NM_178821
NM_001330004, NM_178821
CCDS: CCDS2470
Canonical transcript exons
ENST00000309931 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000843786 | 227906236 | 227906338 |
| ENSE00001012565 | 227904929 | 227905035 |
| ENSE00001012566 | 227907138 | 227907252 |
| ENSE00001071094 | 227903002 | 227903109 |
| ENSE00001787441 | 227923934 | 227924344 |
| ENSE00001903064 | 227871631 | 227871729 |
| ENSE00003459227 | 227921399 | 227921561 |
| ENSE00003483022 | 227891255 | 227891313 |
| ENSE00003521938 | 227918780 | 227918856 |
| ENSE00003566836 | 227898182 | 227898281 |
| ENSE00003600449 | 227893795 | 227893917 |
| ENSE00003631942 | 227885351 | 227885423 |
| ENSE00003786766 | 227889856 | 227890000 |
Expression profiles
Bgee: expression breadth ubiquitous, 128 present calls, max score 96.47.
FANTOM5 (CAGE): breadth broad, TPM avg 1.0614 / max 137.5809, expressed in 365 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 25769 | 0.8635 | 315 |
| 25767 | 0.1116 | 45 |
| 25768 | 0.0682 | 14 |
| 25771 | 0.0181 | 5 |
Top tissues by expression
226 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 96.47 | gold quality |
| bronchial epithelial cell | CL:0002328 | 95.99 | gold quality |
| oocyte | CL:0000023 | 95.91 | gold quality |
| bronchus | UBERON:0002185 | 94.49 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 90.59 | gold quality |
| left testis | UBERON:0004533 | 90.56 | gold quality |
| right uterine tube | UBERON:0001302 | 90.55 | gold quality |
| sperm | CL:0000019 | 90.41 | gold quality |
| right testis | UBERON:0004534 | 90.22 | gold quality |
| testis | UBERON:0000473 | 88.21 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 87.58 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 82.75 | gold quality |
| adult organism | UBERON:0007023 | 81.76 | gold quality |
| oviduct epithelium | UBERON:0004804 | 81.59 | gold quality |
| buccal mucosa cell | CL:0002336 | 79.65 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 78.64 | gold quality |
| nasopharynx | UBERON:0001728 | 78.63 | gold quality |
| fallopian tube | UBERON:0003889 | 77.94 | gold quality |
| nucleus accumbens | UBERON:0001882 | 73.49 | gold quality |
| caudate nucleus | UBERON:0001873 | 72.17 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 71.32 | silver quality |
| nasal cavity mucosa | UBERON:0001826 | 70.86 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 68.97 | gold quality |
| caput epididymis | UBERON:0004358 | 68.12 | gold quality |
| right lung | UBERON:0002167 | 66.47 | gold quality |
| putamen | UBERON:0001874 | 65.47 | gold quality |
| hypothalamus | UBERON:0001898 | 65.10 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 64.27 | gold quality |
| corpus callosum | UBERON:0002336 | 62.61 | gold quality |
| upper lobe of lung | UBERON:0008948 | 62.49 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9388 | yes | 370.20 |
| E-ANND-3 | yes | 7.87 |
| E-CURD-10 | no | 183.30 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
20 targeting DAW1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-30A-3P | 99.87 | 69.74 | 2928 |
| HSA-MIR-30D-3P | 99.87 | 69.92 | 2917 |
| HSA-MIR-30E-3P | 99.87 | 69.68 | 2942 |
| HSA-MIR-4679 | 99.76 | 69.19 | 1229 |
| HSA-MIR-4677-3P | 99.49 | 67.91 | 1246 |
| HSA-MIR-4311 | 99.31 | 70.47 | 3041 |
| HSA-MIR-3973 | 99.20 | 69.19 | 1990 |
| HSA-MIR-548L | 99.06 | 70.90 | 2560 |
| HSA-MIR-6876-3P | 98.97 | 65.69 | 765 |
| HSA-MIR-626 | 98.89 | 66.21 | 762 |
| HSA-MIR-4662A-5P | 98.48 | 67.18 | 1007 |
| HSA-MIR-12116 | 97.94 | 68.91 | 595 |
| HSA-MIR-665 | 97.60 | 65.64 | 1781 |
Literature-anchored findings (GeneRIF, showing 3)
- This paper describes a Chlamydmonas reinhardtii protein with 70% similarity to human WD repeat domain 69 protein. The protein is expressed in flagella and required for assembly of the flagellar outer row dynein ATPase, though it is not a dynein subunit. (PMID:16093345)
- Purification and crystal structure of human ODA16: Implications for ciliary import of outer dynein arms by the intraflagellar transport machinery. (PMID:32239748)
- Biallelic DAW1 variants cause a motile ciliopathy characterized by laterality defects and subtle ciliary beating abnormalities. (PMID:36074124)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | daw1 | ENSDARG00000021462 |
| mus_musculus | Daw1 | ENSMUSG00000053161 |
| rattus_norvegicus | Daw1 | ENSRNOG00000016247 |
Paralogs (26): PAFAH1B1 (ENSG00000007168), SNRNP40 (ENSG00000060688), WDR62 (ENSG00000075702), WDR7 (ENSG00000091157), TBL2 (ENSG00000106638), PAK1IP1 (ENSG00000111845), WDR75 (ENSG00000115368), DCAF4 (ENSG00000119599), TEP1 (ENSG00000129566), AHI1 (ENSG00000135541), WDR38 (ENSG00000136918), MAPKBP1 (ENSG00000137802), POC1B (ENSG00000139323), NEDD1 (ENSG00000139350), COP1 (ENSG00000143207), WDR17 (ENSG00000150627), WDR43 (ENSG00000163811), POC1A (ENSG00000164087), WDR88 (ENSG00000166359), WDR81 (ENSG00000167716), DCAF4L2 (ENSG00000176566), DCAF4L1 (ENSG00000182308), WDR27 (ENSG00000184465), NWD1 (ENSG00000188039), WDR5 (ENSG00000196363), WDR5B (ENSG00000196981)
Protein
Protein identifiers
Dynein assembly factor with WD repeat domains 1 — Q8N136 (reviewed: Q8N136)
Alternative names: Outer row dynein assembly protein 16 homolog, WD repeat-containing protein 69
All UniProt accessions (5): A0A140VKH6, C9JBF9, C9JP90, Q8N136, F8WCV0
UniProt curated annotations — full annotation on UniProt →
Function. Required for axonemal dynein assembly and ciliary motility in ciliated organs, including Kupffer’s vesicle, during embryogenesis. Facilitates the onset of robust cilia motility during development.
Subunit / interactions. Interacts with IFT46.
Subcellular location. Cytoplasm. Cytoskeleton. Flagellum basal body. Flagellum axoneme.
Disease relevance. Ciliary dyskinesia, primary, 52 (CILD52) [MIM:620570] A form of primary ciliary dyskinesia, a disorder characterized by abnormalities of motile cilia. Respiratory infections leading to chronic inflammation and bronchiectasis are recurrent, due to defects in the respiratory cilia. CILD52 is an autosomal recessive form characterized by laterality defects, and mild respiratory symptoms. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the WD repeat WDR69 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8N136-1 | 1 | yes |
| Q8N136-2 | 2 |
RefSeq proteins (2): NP_001316933, NP_849143* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001680 | WD40_rpt | Repeat |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Homologous_superfamily |
| IPR019775 | WD40_repeat_CS | Conserved_site |
| IPR020472 | WD40_PAC1 | Repeat |
| IPR036322 | WD40_repeat_dom_sf | Homologous_superfamily |
Pfam: PF00400
UniProt features (62 total): strand 33, sequence variant 10, repeat 8, turn 6, splice variant 2, chain 1, sequence conflict 1, helix 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5NNZ | X-RAY DIFFRACTION | 2.65 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N136-F1 | 96.63 | 0.97 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 197 (showing top):
TGCGCANK_UNKNOWN, GOCC_MICROTUBULE_ORGANIZING_CENTER, GOBP_SPECIFICATION_OF_SYMMETRY, GOBP_AXONEMAL_DYNEIN_COMPLEX_ASSEMBLY, SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN, GOBP_CILIUM_ORGANIZATION, GOBP_CILIUM_MOVEMENT, GOBP_OUTER_DYNEIN_ARM_ASSEMBLY, GOBP_ORGANELLE_ASSEMBLY, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, GOBP_PROTEIN_POLYUBIQUITINATION, GOBP_MICROTUBULE_BUNDLE_FORMATION, RFX1_02, GOBP_CELL_PROJECTION_ORGANIZATION, GOBP_AXONEME_ASSEMBLY
GO Biological Process (9): protein polyubiquitination (GO:0000209), determination of left/right symmetry (GO:0007368), heart development (GO:0007507), outer dynein arm assembly (GO:0036158), intraciliary transport (GO:0042073), cerebrospinal fluid circulation (GO:0090660), epithelial cilium movement involved in extracellular fluid movement (GO:0003351), establishment of localization in cell (GO:0051649), axonemal dynein complex assembly (GO:0070286)
GO Molecular Function (2): ubiquitin-like ligase-substrate adaptor activity (GO:1990756), protein binding (GO:0005515)
GO Cellular Component (9): extracellular region (GO:0005576), cilium (GO:0005929), SCF ubiquitin ligase complex (GO:0019005), ciliary basal body (GO:0036064), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), motile cilium (GO:0031514), cell projection (GO:0042995), transferase complex (GO:1990234)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cilium | 3 |
| cellular anatomical structure | 3 |
| protein ubiquitination | 1 |
| determination of bilateral symmetry | 1 |
| left/right pattern formation | 1 |
| animal organ development | 1 |
| circulatory system development | 1 |
| axonemal dynein complex assembly | 1 |
| transport along microtubule | 1 |
| cilium organization | 1 |
| epithelial cilium movement involved in extracellular fluid movement | 1 |
| nervous system process | 1 |
| cilium movement | 1 |
| extracellular transport | 1 |
| microtubule-based transport | 1 |
| establishment of localization | 1 |
| cellular localization | 1 |
| axoneme assembly | 1 |
| protein-containing complex assembly | 1 |
| enzyme-substrate adaptor activity | 1 |
| binding | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
| cullin-RING ubiquitin ligase complex | 1 |
| microtubule organizing center | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
| catalytic complex | 1 |
Protein interactions and networks
STRING
1083 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DAW1 | IFT46 | Q9NQC8 | 983 |
| DAW1 | DNAAF3 | Q8N9W5 | 653 |
| DAW1 | DNAAF4 | Q8WXU2 | 642 |
| DAW1 | DNAAF1 | Q8NEP3 | 582 |
| DAW1 | ODAD3 | A5D8V7 | 571 |
| DAW1 | ODAD4 | Q96NG3 | 559 |
| DAW1 | IFT81 | Q8WYA0 | 546 |
| DAW1 | DNAAF19 | Q8IW40 | 542 |
| DAW1 | TEKT1 | Q969V4 | 531 |
| DAW1 | IFT74 | Q96LB3 | 522 |
| DAW1 | DRC11 | Q86XH1 | 518 |
| DAW1 | DRC2 | Q8IXS2 | 509 |
| DAW1 | DNAAF2 | Q9NVR5 | 507 |
| DAW1 | IFT56 | A0AVF1 | 496 |
| DAW1 | CFAP45 | Q9UL16 | 495 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SUV39H1 | CBX5 | psi-mi:“MI:0914”(association) | 0.950 |
| DAW1 | SRPK2 | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 |
| DAW1 | SRPK1 | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 |
| KMT5A | RSL1D1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (10): SETD8 (Affinity Capture-MS), SUV39H1 (Affinity Capture-MS), RPL26L1 (Affinity Capture-MS), DAW1 (Affinity Capture-MS), RPL36 (Affinity Capture-MS), RALY (Affinity Capture-MS), CBX5 (Affinity Capture-MS), HIST1H3A (Affinity Capture-MS), DAW1 (Biochemical Activity), DAW1 (Biochemical Activity)
ESM2 similar proteins: A0A223GEB2, A1L271, D3Z7A5, G1SJB4, G4MQX3, O14775, O18640, O24076, O35353, O42248, O42249, O74184, P16520, P17343, P25387, P26308, P29387, P41318, P52287, P62881, P62882, P63243, P63244, P63245, P63246, P63247, P68040, P79959, Q01369, Q0P593, Q1LV15, Q20636, Q25189, Q3Y8L7, Q4R7Y4, Q4R8E7, Q5BK30, Q5FWQ6, Q5RDY7, Q61011
Diamond homologs: A1CJY4, A1D7I5, A2QEV8, A3LX18, A4RDD7, A5DGL8, A5DVY3, A6RUL1, A6ZMK5, A7EF03, A7RM20, A7TH19, A8QBF3, A8WVX8, A8XYW9, B0BNA7, B0XFT7, B0XYC8, B3MVL6, B3N4C7, B4GSH1, B4I195, B4JB43, B4KGX9, B4LUA5, B4N0L0, B4NW98, B4Q354, B5FZ19, B8M0Q1, E3LB80, O02195, O13985, P0CS32, P0CS33, P0CS38, P0CS39, P14197, P20053, P40217
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
75 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 5 |
| Likely pathogenic | 0 |
| Uncertain significance | 53 |
| Likely benign | 7 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1325631 | NM_178821.3(DAW1):c.427A>G (p.Asn143Asp) | Pathogenic |
| 1325691 | NM_178821.3(DAW1):c.357G>A (p.Trp119Ter) | Pathogenic |
| 1325692 | NM_178821.3(DAW1):c.1091G>C (p.Ser364Thr) | Pathogenic |
| 1325693 | NM_178821.3(DAW1):c.197T>A (p.Leu66Ter) | Pathogenic |
| 1325694 | NM_178821.3(DAW1):c.1116G>T (p.Trp372Cys) | Pathogenic |
SpliceAI
1937 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:227871725:GCCAG:G | donor_gain | 1.0000 |
| 2:227871727:CAG:C | donor_loss | 1.0000 |
| 2:227871730:GTAC:G | donor_loss | 1.0000 |
| 2:227889996:TTAAG:T | donor_loss | 1.0000 |
| 2:227889997:TAAG:T | donor_loss | 1.0000 |
| 2:227889998:AAG:A | donor_loss | 1.0000 |
| 2:227889999:AGGT:A | donor_loss | 1.0000 |
| 2:227890000:GGTAA:G | donor_loss | 1.0000 |
| 2:227890001:GTAAT:G | donor_loss | 1.0000 |
| 2:227890002:T:G | donor_loss | 1.0000 |
| 2:227903092:G:GT | donor_gain | 1.0000 |
| 2:227903092:G:T | donor_gain | 1.0000 |
| 2:227903108:GA:G | donor_gain | 1.0000 |
| 2:227903110:G:GG | donor_gain | 1.0000 |
| 2:227904924:TCTA:T | acceptor_loss | 1.0000 |
| 2:227904926:TAGGG:T | acceptor_loss | 1.0000 |
| 2:227904927:A:AG | acceptor_gain | 1.0000 |
| 2:227904927:AG:A | acceptor_gain | 1.0000 |
| 2:227904928:G:A | acceptor_loss | 1.0000 |
| 2:227904928:G:GG | acceptor_gain | 1.0000 |
| 2:227904928:GG:G | acceptor_gain | 1.0000 |
| 2:227904928:GGGAC:G | acceptor_gain | 1.0000 |
| 2:227905032:G:GT | donor_gain | 1.0000 |
| 2:227905033:A:T | donor_gain | 1.0000 |
| 2:227905033:AAGG:A | donor_loss | 1.0000 |
| 2:227905035:GGTAA:G | donor_loss | 1.0000 |
| 2:227905036:G:T | donor_loss | 1.0000 |
| 2:227905037:T:A | donor_loss | 1.0000 |
| 2:227907121:T:TA | acceptor_gain | 1.0000 |
| 2:227907130:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
2731 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:227893806:G:A | G110E | 0.999 |
| 2:227893808:A:C | S111R | 0.999 |
| 2:227893810:C:A | S111R | 0.999 |
| 2:227893810:C:G | S111R | 0.999 |
| 2:227893823:T:C | C116R | 0.999 |
| 2:227893825:C:G | C116W | 0.999 |
| 2:227893887:T:A | V137D | 0.999 |
| 2:227898193:C:A | A151D | 0.999 |
| 2:227898198:G:T | G153W | 0.999 |
| 2:227898199:G:A | G153E | 0.999 |
| 2:227898201:T:C | S154P | 0.999 |
| 2:227898204:T:C | F155L | 0.999 |
| 2:227898206:T:A | F155L | 0.999 |
| 2:227898206:T:G | F155L | 0.999 |
| 2:227898207:G:C | D156H | 0.999 |
| 2:227898208:A:T | D156V | 0.999 |
| 2:227898225:T:A | W162R | 0.999 |
| 2:227898225:T:C | W162R | 0.999 |
| 2:227903045:G:A | G195E | 0.999 |
| 2:227903047:A:C | S196R | 0.999 |
| 2:227903049:T:A | S196R | 0.999 |
| 2:227903049:T:G | S196R | 0.999 |
| 2:227923942:G:C | D408H | 0.999 |
| 2:227893803:C:A | T109K | 0.998 |
| 2:227893809:G:T | S111I | 0.998 |
| 2:227893814:G:C | D113H | 0.998 |
| 2:227893815:A:T | D113V | 0.998 |
| 2:227893818:G:C | R114P | 0.998 |
| 2:227893832:T:A | W119R | 0.998 |
| 2:227893832:T:C | W119R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000009704 (2:227886551 A>G), RS1000049489 (2:227891342 T>C), RS1000161202 (2:227897832 A>G), RS1000250164 (2:227876189 T>G), RS1000290445 (2:227899655 T>A), RS1000291107 (2:227885501 TA>T), RS1000385387 (2:227911886 T>C), RS1000474768 (2:227923048 T>G), RS1000608873 (2:227895798 T>C), RS1000618091 (2:227897395 T>G), RS1000659237 (2:227899324 T>C), RS1000669673 (2:227902733 G>A), RS1000799145 (2:227915838 A>G), RS1000853612 (2:227874952 G>C,T), RS1000866592 (2:227914916 A>G)
Disease associations
OMIM: gene MIM:620279 | disease phenotypes: MIM:244400, MIM:620570
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| ciliary dyskinesia, primary, 52 | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| primary ciliary dyskinesia | Limited | AR |
| visceral heterotaxy | Moderate | AR |
Mondo (2): primary ciliary dyskinesia (MONDO:0016575), ciliary dyskinesia, primary, 52 (MONDO:0957922)
Orphanet (1): Primary ciliary dyskinesia (Orphanet:244)
HPO phenotypes
64 total (30 of 64 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000119 | Abnormality of the genitourinary system |
| HP:0000238 | Hydrocephalus |
| HP:0000365 | Hearing impairment |
| HP:0000389 | Chronic otitis media |
| HP:0000403 | Recurrent otitis media |
| HP:0000405 | Conductive hearing impairment |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000750 | Delayed speech and language development |
| HP:0000924 | Abnormality of the skeletal system |
| HP:0001217 | Clubbing |
| HP:0001627 | Abnormal heart morphology |
| HP:0001629 | Ventricular septal defect |
| HP:0001631 | Atrial septal defect |
| HP:0001642 | Pulmonic stenosis |
| HP:0001643 | Patent ductus arteriosus |
| HP:0001655 | Patent foramen ovale |
| HP:0001669 | Transposition of the great arteries |
| HP:0001696 | Situs inversus totalis |
| HP:0001719 | Double outlet right ventricle |
| HP:0001742 | Nasal congestion |
| HP:0001746 | Asplenia |
| HP:0001748 | Polysplenia |
| HP:0002011 | Morphological central nervous system abnormality |
| HP:0002110 | Bronchiectasis |
| HP:0002119 | Ventriculomegaly |
| HP:0002257 | Chronic rhinitis |
| HP:0002566 | Intestinal malrotation |
| HP:0002643 | Neonatal respiratory distress |
| HP:0002783 | Recurrent lower respiratory tract infections |
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000094_2 | Blood pressure | 3.000000e-07 |
| GCST005038_50 | Allergic disease (asthma, hay fever or eczema) | 3.000000e-12 |
| GCST006409_13 | Allergic rhinitis | 2.000000e-10 |
| GCST009798_81 | Asthma | 1.000000e-09 |
| GCST90014325_37 | Asthma | 2.000000e-08 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006336 | diastolic blood pressure |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002925 | Ciliary Motility Disorders | C08.200; C09.150; C16.131.077.245.500; C16.320.184.500 |
| D007619 | Kartagener Syndrome | C08.127.384.500; C08.200.531; C08.695.501; C09.150.531; C14.240.400.280.500; C14.280.400.280.500; C16.131.077.245.500.531; C16.131.240.400.280.500; C16.131.740.501; C16.131.810.250.500; C16.320.184.500.531; C16.320.480 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
33 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression, increases expression, increases methylation | 3 |
| Air Pollutants | increases expression, increases abundance | 2 |
| Silicon Dioxide | decreases expression, increases expression | 2 |
| Smoke | increases expression, increases abundance | 2 |
| aristolochic acid I | decreases expression | 1 |
| afuresertib | decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | increases methylation | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| 2-methyl-4-isothiazolin-3-one | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| pentanal | increases expression | 1 |
| abrine | increases expression | 1 |
| NSC 689534 | affects binding, increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Aldehydes | increases expression | 1 |
| Copper | affects binding, increases expression | 1 |
| Methapyrilene | increases methylation | 1 |
| Oxygen | decreases expression | 1 |
| Thiram | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Triclosan | increases expression | 1 |
| Valproic Acid | affects expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Asbestos, Crocidolite | increases expression | 1 |
Clinical trials (associated diseases)
71 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02871778 | PHASE2 | COMPLETED | Clearing Lungs With ENaC Inhibition in Primary Ciliary Dyskinesia |
| NCT07318974 | PHASE2 | ACTIVE_NOT_RECRUITING | Melatonin Therapy for Improving ICSI Outcomes in Women With Diminished Ovarian Reserve |
| NCT05737485 | PHASE1 | COMPLETED | Study Evaluating the Safety and Tolerability of RCT1100 in Healthy and PCD Subjects |
| NCT06600425 | PHASE1 | COMPLETED | A Study to Assess the Safety, Tolerability, Ciliary Rescue, and Pharmacodynamics of RCT1100 in Adults With PCD |
| NCT06633757 | PHASE1 | COMPLETED | Study of Inhaled RCT1100 in Adults With PCD Caused by Pathogenic Mutations in the DNAI1 Gene to Measure Mucociliary Clearance |
| NCT04901715 | EARLY_PHASE1 | COMPLETED | Functional Studies of Novel Genes Mutated in Primary Ciliary Dyskinesia II: Genotype to Phenotype |
| NCT00005650 | Not specified | COMPLETED | Genetic Study of Patients With Primary Ciliary Dyskinesia |
| NCT00323167 | Not specified | COMPLETED | Rare Genetic Disorders of the Breathing Airways |
| NCT00368446 | Not specified | COMPLETED | Genetic Disorders of Mucociliary Clearance in Nontuberculous Mycobacterial Lung Disease |
| NCT00450918 | Not specified | COMPLETED | Evaluating Progression of and Diagnostic Tools for Primary Ciliary Dyskinesia in Children and Adolescents |
| NCT00608556 | Not specified | COMPLETED | Dyskinesia, Heterotaxy and Congenital Heart Disease |
| NCT00686309 | Not specified | UNKNOWN | Comparison of On-line and Off-line Measurements of Exhaled Nitric Oxide (NO) |
| NCT00722878 | Not specified | COMPLETED | Long-term Lung Function and Disease Progression in Children With Early Onset Primary Ciliary Dyskinesia Lung Disease |
| NCT00739817 | Not specified | UNKNOWN | Screening for Primary Ciliary Dyskinesia Using Nasal Nitric Oxide |
| NCT00783887 | Not specified | COMPLETED | Diagnosis of Primary Ciliary Dyskinesia |
| NCT00807482 | Not specified | RECRUITING | Pathogenesis of Primary Ciliary Dyskinesia (PCD) Lung Disease |
| NCT01070914 | Not specified | UNKNOWN | Early Detection and Characterization of Primary Ciliary Dyskinesia |
| NCT01155115 | Not specified | COMPLETED | Inflammatory and Microbiologic Markers in Sputum: Comparing Cystic Fibrosis With Primary Ciliary Dyskinesia |
| NCT01246258 | Not specified | COMPLETED | Otolith Function in Patients With Primary Ciliary Dyskinesia |
| NCT01929356 | Not specified | RECRUITING | Chest Physiotherapy and Lung Function in Primary Ciliary Dyskinesia |
| NCT02389049 | Not specified | COMPLETED | Genetics of Primary Ciliary Dyskinesia |
| NCT02419365 | Not specified | RECRUITING | International Primary Ciliary Dyskinesia (PCD) Registry |
| NCT02699177 | Not specified | UNKNOWN | In Vivo Measurements of Nasal Ciliary Beat Frequency by Using Interferometry |
| NCT02704455 | Not specified | NOT_YET_RECRUITING | Registry Study on Primary Ciliary Dyskinesia in Chinese Children |
| NCT03271840 | Not specified | COMPLETED | Registry for Primary Ciliary Dyskinesia |
| NCT03279965 | Not specified | UNKNOWN | MRI in Cystic Fibrosis and Primary Ciliary Dyskinesia |
| NCT03320382 | Not specified | UNKNOWN | Multiple Breath Washout, a Clinimetric Dataset |
| NCT03370029 | Not specified | COMPLETED | Respiratory Muscle Strength, Exercise Capacity and Physical Activity Levels in Children Primary Ciliary Dyskinesia |
| NCT03494894 | Not specified | COMPLETED | Bacteriological Link Between Upper and Lower Airways in Cystic Fibrosis and Primary Ciliary Dyskinesia |
| NCT03517865 | Not specified | ACTIVE_NOT_RECRUITING | International Primary Ciliary Dyskinesia Cohort |
| NCT03606200 | Not specified | RECRUITING | Swiss Primary Ciliary Dyskinesia Registry |
| NCT03704207 | Not specified | RECRUITING | Utility of PCD Diagnostics to Improve Clinical Care |
| NCT03704896 | Not specified | UNKNOWN | PRospective Observational Multicentre Study on VAriability of Lung Function in Stable PCD Patients |
| NCT03801395 | Not specified | COMPLETED | PCD New Gene Discovery |
| NCT03809091 | Not specified | UNKNOWN | WGS of Korean Idiopathic Bronchiectasis |
| NCT03832491 | Not specified | COMPLETED | Effect of Game Based Approach on Oxygenation, Functional Capacity and Quality of Life in Primary Ciliary Dyskinesia |
| NCT04161313 | Not specified | COMPLETED | Respiratory Function, Exercise Capacity and Peripheral Muscle Strength Among Patients With CF, PCD and Healthy Children |
| NCT04476433 | Not specified | COMPLETED | Intervention in Chronic Pediatric Patients and Their Families. |
| NCT04489472 | Not specified | UNKNOWN | The Effect of a Dietary Supplement Rich in Nitric Oxide in Patients Diagnosed With Primary Ciliary Dyskinesia. |
| NCT04602481 | Not specified | RECRUITING | Living With Primary Ciliary Dyskinesia (Living With PCD) |
Related Atlas pages
- Associated diseases: ciliary dyskinesia, primary, 52, primary ciliary dyskinesia, visceral heterotaxy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): allergic rhinitis, ciliary dyskinesia, primary, 52, primary ciliary dyskinesia