DAZAP2
gene geneOn this page
Also known as KIAA0058
Summary
DAZAP2 (DAZ associated protein 2, HGNC:2684) is a protein-coding gene on chromosome 12q13.13, encoding DAZ-associated protein 2 (Q15038). In unstressed cells, promotes SIAH1-mediated polyubiquitination and degradation of the serine/threonine-protein kinase HIPK2, probably by acting as a loading factor that potentiates complex formation between HIPK2 and ubiquitin ligase SIAH1.
This gene encodes a proline-rich protein which interacts with the deleted in azoospermia (DAZ) and the deleted in azoospermia-like gene through the DAZ-like repeats. This protein also interacts with the transforming growth factor-beta signaling molecule SARA (Smad anchor for receptor activation), eukaryotic initiation factor 4G, and an E3 ubiquitinase that regulates its stability in splicing factor containing nuclear speckles. The encoded protein may function in various biological and pathological processes including spermatogenesis, cell signaling and transcription regulation, formation of stress granules during translation arrest, RNA splicing, and pathogenesis of multiple myeloma. Multiple transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 9802 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 48 total
- MANE Select transcript:
NM_014764
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2684 |
| Approved symbol | DAZAP2 |
| Name | DAZ associated protein 2 |
| Location | 12q13.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0058 |
| Ensembl gene | ENSG00000183283 |
| Ensembl biotype | protein_coding |
| OMIM | 607431 |
| Entrez | 9802 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 9 protein_coding, 4 protein_coding_CDS_not_defined, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000412716, ENST00000425012, ENST00000436900, ENST00000439799, ENST00000449723, ENST00000549041, ENST00000549497, ENST00000549555, ENST00000549732, ENST00000551313, ENST00000551534, ENST00000551919, ENST00000552173, ENST00000552459, ENST00000604900, ENST00000905427
RefSeq mRNA: 6 — MANE Select: NM_014764
NM_001136264, NM_001136266, NM_001136267, NM_001136268, NM_001136269, NM_014764
CCDS: CCDS44884, CCDS44885, CCDS44886, CCDS44887, CCDS44888, CCDS8809
Canonical transcript exons
ENST00000412716 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002414615 | 51238826 | 51238920 |
| ENSE00003466478 | 51240343 | 51240461 |
| ENSE00003565664 | 51240871 | 51241116 |
| ENSE00003583076 | 51242330 | 51243933 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 99.60.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 257.9184 / max 3785.3908, expressed in 1828 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 125477 | 210.1544 | 1828 |
| 125479 | 34.3953 | 1812 |
| 125480 | 9.1179 | 1728 |
| 125478 | 1.8626 | 1046 |
| 125476 | 1.5292 | 1114 |
| 125481 | 0.8591 | 563 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| amniotic fluid | UBERON:0000173 | 99.60 | gold quality |
| bronchial epithelial cell | CL:0002328 | 99.59 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 99.56 | gold quality |
| endothelial cell | CL:0000115 | 99.53 | gold quality |
| bronchus | UBERON:0002185 | 99.52 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 99.49 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 99.45 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 99.44 | gold quality |
| monocyte | CL:0000576 | 99.42 | gold quality |
| leukocyte | CL:0000738 | 99.41 | gold quality |
| renal glomerulus | UBERON:0000074 | 99.41 | gold quality |
| adult organism | UBERON:0007023 | 99.41 | gold quality |
| mononuclear cell | CL:0000842 | 99.40 | gold quality |
| blood | UBERON:0000178 | 99.38 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 99.37 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 99.37 | gold quality |
| colonic mucosa | UBERON:0000317 | 99.36 | gold quality |
| parotid gland | UBERON:0001831 | 99.36 | gold quality |
| seminal vesicle | UBERON:0000998 | 99.32 | gold quality |
| caput epididymis | UBERON:0004358 | 99.32 | gold quality |
| granulocyte | CL:0000094 | 99.30 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 99.30 | gold quality |
| visceral pleura | UBERON:0002401 | 99.28 | gold quality |
| nephron tubule | UBERON:0001231 | 99.26 | gold quality |
| skin of hip | UBERON:0001554 | 99.24 | gold quality |
| superficial temporal artery | UBERON:0001614 | 99.24 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 99.24 | gold quality |
| upper leg skin | UBERON:0004262 | 99.24 | gold quality |
| endometrium epithelium | UBERON:0004811 | 99.21 | gold quality |
| jejunal mucosa | UBERON:0000399 | 99.20 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-122 | yes | 32.59 |
| E-MTAB-9388 | yes | 11.06 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
93 targeting DAZAP2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-512-3P | 99.97 | 67.35 | 1049 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-767-5P | 99.95 | 70.85 | 993 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-652-5P | 99.91 | 67.49 | 505 |
| HSA-MIR-8087 | 99.90 | 69.55 | 1351 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-345-3P | 99.89 | 70.23 | 1421 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
Literature-anchored findings (GeneRIF, showing 5)
- DAZAP2 is downregulated in multiple myeloma samples and it may be a signal molecule in multiple myeloma cells. DAZAP2 is involved in the pathogenesis of MM (PMID:17935665)
- Lys residues might play important roles in regulating the intracellular dynamics of the PRTB protein.K153 in human PRTB is essential for its ubiquitin-dependent degradation (PMID:21274613)
- In summary we established a new mechanism of IL17RB regulation-Smurf2 dependent degradation of its adaptor protein DAZAP2. (PMID:22070932)
- methylation of DAZAP2 promoter was involved in downregulation of DAZAP2 in multiple myeloma cells. (PMID:22792345)
- DAZAP2 acts as specifier of the p53 response to DNA damage. (PMID:33591310)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dazap2 | ENSDARG00000007867 |
| mus_musculus | Dazap2 | ENSMUSG00000000346 |
| rattus_norvegicus | Dazap2 | ENSRNOG00000004628 |
| drosophila_melanogaster | CG34125 | FBGN0083961 |
Protein
Protein identifiers
DAZ-associated protein 2 — Q15038 (reviewed: Q15038)
Alternative names: Deleted in azoospermia-associated protein 2, Proline-rich transcript in brain protein
All UniProt accessions (4): Q15038, E9PE89, F8VUW5, S4R3Q0
UniProt curated annotations — full annotation on UniProt →
Function. In unstressed cells, promotes SIAH1-mediated polyubiquitination and degradation of the serine/threonine-protein kinase HIPK2, probably by acting as a loading factor that potentiates complex formation between HIPK2 and ubiquitin ligase SIAH1. In response to DNA damage, localizes to the nucleus following phosphorylation by HIPK2 and modulates the expression of a subset of TP53/p53 target genes by binding to TP53 at target gene promoters. This limits the expression of a number of cell death-mediating TP53 target genes, reducing DNA damage-induced cell death. Enhances the binding of transcription factor TCF7L2/TCF4, a Wnt signaling pathway effector, to the promoters of target genes. Plays a role in stress granule formation.
Subunit / interactions. Interacts with SOX6. Interacts with DAZ1 and DAZL. Interacts with IL17RB. May interact with FAM168B. Interacts with INCA1. Interacts with EIF4G1 and EIF4G2. Interacts (via PPAY motif) with NEDD4 (via WW domains). Interacts with transcription factor TCF7L2/TCF4; the interaction results in localization of DAZAP2 to the nucleus. Interacts with transcription factors TCF7 and TCF7L1. Interacts with transcription factor LEF1. Interacts with serine/threonine-protein kinase HIPK2; the interaction results in phosphorylation of DAZAP2 which causes localization of DAZAP2 to the nucleus, reduces interaction of DAZAP2 with HIPK2 and prevents DAZAP2-dependent degradation of HIPK2. Interacts with ubiquitin ligase SIAH1; the interaction is decreased following phosphorylation of DAZAP2 by HIPK2. Interacts with TP53 at TP53 target gene promoters; the interaction is triggered by DNA damage.
Subcellular location. Cytoplasm. Nucleus. Nucleus speckle. Nuclear body. Stress granule.
Tissue specificity. Widely expressed. Expressed in spleen, thymus, prostate, testis, ovary, small intestine, colon and leukocytes. Down-regulated in multiple myeloma.
Post-translational modifications. Ubiquitinated. Ubiquitinated by SMURF2, leading to proteasomal degradation. Ubiquitinated by NEDD4, leading to proteasomal degradation. Following DNA damage, phosphorylated by HIPK2 which promotes DAZAP2 localization to the nucleus, reduces interaction of DAZAP2 with HIPK2 and SIAH1, and prevents DAZAP2-dependent ubiquitination of HIPK2 by E3 ubiquitin-protein ligase SIAH1 and subsequent HIPK2 proteasomal degradation.
Induction. Induced by cellular stress.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q15038-1 | 1 | yes |
| Q15038-2 | 2 | |
| Q15038-6 | 6 | |
| Q15038-3 | 3 | |
| Q15038-4 | 4 | |
| Q15038-5 | 5 |
RefSeq proteins (6): NP_001129736, NP_001129738, NP_001129739, NP_001129740, NP_001129741, NP_055579* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR022730 | DAZ_assoc-2 | Family |
Pfam: PF11029
UniProt features (18 total): splice variant 5, mutagenesis site 4, sequence conflict 3, chain 1, region of interest 1, sequence variant 1, short sequence motif 1, compositionally biased region 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q15038-F1 | 58.37 | 0.00 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 77
Mutagenesis-validated functional residues (4):
| Position | Phenotype |
|---|---|
| 4 | does not affect ubiquitin-mediated degradation. abolishes nuclear localization with the protein located in the cytoplasm |
| 40–42 | abolishes interaction with nedd4. abolishes nedd4-mediated ubiquitination. |
| 77 | loss of phosphorylation by hipk2. |
| 153 | abolishes ubiquitin-mediated degradation. does not affect nuclear localization. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 279 (showing top):
TGCACTT_MIR519C_MIR519B_MIR519A, MORF_UBE2I, HSIAO_HOUSEKEEPING_GENES, GNF2_LYN, AGGCACT_MIR5153P, GOMF_KINASE_ACTIVATOR_ACTIVITY, GOBP_PROTEIN_DESTABILIZATION, UEDA_PERIFERAL_CLOCK, GNF2_MCL1, MORF_CCNI, GNF2_ICAM3, BLALOCK_ALZHEIMERS_DISEASE_UP, MORF_CTBP1, GNF2_MYD88, GOBP_ORGANELLE_ASSEMBLY
GO Biological Process (3): protein destabilization (GO:0031648), stress granule assembly (GO:0034063), positive regulation of DNA-templated transcription (GO:0045893)
GO Molecular Function (11): p53 binding (GO:0002039), transcription coactivator activity (GO:0003713), receptor tyrosine kinase binding (GO:0030971), mitogen-activated protein kinase kinase kinase binding (GO:0031435), ubiquitin protein ligase binding (GO:0031625), identical protein binding (GO:0042802), protein serine/threonine kinase activator activity (GO:0043539), WW domain binding (GO:0050699), protein serine/threonine kinase binding (GO:0120283), DNA-binding transcription factor binding (GO:0140297), protein binding (GO:0005515)
GO Cellular Component (6): nucleus (GO:0005634), cytoplasm (GO:0005737), cytoplasmic stress granule (GO:0010494), nuclear body (GO:0016604), nuclear speck (GO:0016607), protein-containing complex (GO:0032991)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein binding | 2 |
| protein kinase binding | 2 |
| regulation of protein stability | 1 |
| membraneless organelle assembly | 1 |
| DNA-templated transcription | 1 |
| regulation of DNA-templated transcription | 1 |
| positive regulation of RNA biosynthetic process | 1 |
| transcription coregulator activity | 1 |
| positive regulation of DNA-templated transcription | 1 |
| signaling receptor binding | 1 |
| protein tyrosine kinase binding | 1 |
| ubiquitin-like protein ligase binding | 1 |
| protein serine/threonine kinase activity | 1 |
| protein kinase activator activity | 1 |
| protein domain specific binding | 1 |
| transcription factor binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
| cytoplasmic ribonucleoprotein granule | 1 |
| nucleoplasm | 1 |
| intracellular membraneless organelle | 1 |
| nuclear ribonucleoprotein granule | 1 |
| cellular_component | 1 |
Protein interactions and networks
STRING
708 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DAZAP2 | DAZ1 | Q9NQZ3 | 960 |
| DAZAP2 | DAZAP1 | Q96EP5 | 938 |
| DAZAP2 | DAZL | Q92904 | 912 |
| DAZAP2 | BOLL | Q8N9W6 | 835 |
| DAZAP2 | TXNL1 | O43396 | 763 |
| DAZAP2 | IL17RB | Q9NRM6 | 594 |
| DAZAP2 | HNRNPAB | Q99729 | 590 |
| DAZAP2 | DDX4 | Q9NQI0 | 543 |
| DAZAP2 | ARX | Q96QS3 | 541 |
| DAZAP2 | TOB2 | Q14106 | 528 |
| DAZAP2 | SLAIN1 | Q8ND83 | 507 |
| DAZAP2 | BATF2 | Q8N1L9 | 487 |
| DAZAP2 | PRTG | Q2VWP7 | 480 |
| DAZAP2 | DPH7 | Q9BTV6 | 468 |
| DAZAP2 | TCF7 | P36402 | 428 |
IntAct
772 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DAZAP2 | ZFAND2B | psi-mi:“MI:0915”(physical association) | 0.880 |
| ZFAND2B | DAZAP2 | psi-mi:“MI:0915”(physical association) | 0.880 |
| RHOXF2 | DAZAP2 | psi-mi:“MI:0915”(physical association) | 0.850 |
| TOLLIP | DAZAP2 | psi-mi:“MI:0915”(physical association) | 0.840 |
| DAZAP2 | TOLLIP | psi-mi:“MI:0915”(physical association) | 0.840 |
| DAZAP2 | HGS | psi-mi:“MI:0915”(physical association) | 0.780 |
| DAZAP2 | BAG3 | psi-mi:“MI:0915”(physical association) | 0.780 |
| RPS27A | DAZAP2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| DAZAP2 | STAM2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| C1orf94 | DAZAP2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| DAZAP2 | DCUN1D1 | psi-mi:“MI:0915”(physical association) | 0.780 |
| DAZAP2 | SPMIP9 | psi-mi:“MI:0915”(physical association) | 0.780 |
| UBAC1 | DAZAP2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| DAZAP2 | RNF208 | psi-mi:“MI:0915”(physical association) | 0.780 |
| HGS | DAZAP2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| STAM2 | DAZAP2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| DAZAP2 | C1orf94 | psi-mi:“MI:0915”(physical association) | 0.780 |
| DCUN1D1 | DAZAP2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| SPMIP9 | DAZAP2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| DAZAP2 | UBAC1 | psi-mi:“MI:0915”(physical association) | 0.780 |
| RNF208 | DAZAP2 | psi-mi:“MI:0915”(physical association) | 0.780 |
BioGRID (304): DAZAP2 (Two-hybrid), DAZAP2 (Two-hybrid), DAZAP2 (Two-hybrid), DAZAP2 (Two-hybrid), DAZAP2 (Two-hybrid), DAZAP2 (Two-hybrid), DAZAP2 (Two-hybrid), DAZAP2 (Two-hybrid), DAZAP2 (Two-hybrid), DAZAP2 (Two-hybrid), DAZAP2 (Two-hybrid), DAZAP2 (Two-hybrid), DAZAP2 (Two-hybrid), OPTN (Two-hybrid), CALCOCO2 (Two-hybrid)
ESM2 similar proteins: A0JNC2, A1KXE4, A8E639, A8MV65, D4AEP3, E3X5D6, P05411, P12981, P18870, P54864, P60486, Q08BY2, Q0IHC4, Q0VFP2, Q14157, Q15032, Q15038, Q157S1, Q16656, Q3LRZ1, Q3T0A9, Q3T0K9, Q3U182, Q4R5H7, Q53ET0, Q58D45, Q5BJ83, Q5R526, Q5RDV6, Q5U2U6, Q5XIH2, Q5ZIS9, Q68ED7, Q6PEH8, Q7PXU6, Q80TM6, Q80X50, Q80XQ8, Q8AVW3, Q8BGZ2
Diamond homologs: P60486, Q15038, Q3T0K9, Q4R5H7, Q5R526, Q9DCP9
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| HIPK2 | “down-regulates activity” | DAZAP2 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 72 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| InlB-mediated entry of Listeria monocytogenes into host cell | 5 | 100.2× | 1e-07 |
| Negative regulation of MET activity | 5 | 68.3× | 8e-07 |
| Synthesis of active ubiquitin: roles of E1 and E2 enzymes | 6 | 58.2× | 1e-07 |
| Endosomal Sorting Complex Required For Transport (ESCRT) | 6 | 58.2× | 1e-07 |
| EGFR downregulation | 6 | 54.6× | 1e-07 |
| Budding and maturation of HIV virion | 5 | 53.7× | 2e-06 |
| Ovarian tumor domain proteases | 5 | 36.6× | 6e-06 |
| Regulation of TNFR1 signaling | 6 | 35.4× | 9e-07 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein K48-linked ubiquitination | 5 | 14.8× | 1e-03 |
| protein ubiquitination | 10 | 7.3× | 3e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
48 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 35 |
| Likely benign | 6 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1181 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:51242328:A:AG | acceptor_gain | 1.0000 |
| 12:51242329:G:GG | acceptor_gain | 1.0000 |
| 12:51246117:CAA:C | acceptor_gain | 1.0000 |
| 12:51246117:CAACT:C | acceptor_gain | 1.0000 |
| 12:51246120:C:CC | acceptor_gain | 1.0000 |
| 12:51246121:T:C | acceptor_gain | 1.0000 |
| 12:51246121:T:TC | acceptor_gain | 1.0000 |
| 12:51246839:A:AC | acceptor_gain | 1.0000 |
| 12:51246839:A:C | acceptor_gain | 1.0000 |
| 12:51246841:G:GC | acceptor_gain | 1.0000 |
| 12:51246849:G:C | acceptor_gain | 1.0000 |
| 12:51246849:G:GC | acceptor_gain | 1.0000 |
| 12:51241117:G:GG | donor_gain | 0.9900 |
| 12:51242325:TTCAG:T | acceptor_loss | 0.9900 |
| 12:51242326:TCAGC:T | acceptor_loss | 0.9900 |
| 12:51242327:CAGCC:C | acceptor_loss | 0.9900 |
| 12:51242328:AGCCT:A | acceptor_loss | 0.9900 |
| 12:51242329:G:GC | acceptor_loss | 0.9900 |
| 12:51242329:GC:G | acceptor_gain | 0.9900 |
| 12:51242329:GCCT:G | acceptor_gain | 0.9900 |
| 12:51246085:C:CT | acceptor_gain | 0.9900 |
| 12:51246086:G:T | acceptor_gain | 0.9900 |
| 12:51246091:C:CT | acceptor_gain | 0.9900 |
| 12:51246829:CTT:C | acceptor_gain | 0.9900 |
| 12:51246832:C:CC | acceptor_gain | 0.9900 |
| 12:51269240:CCTA:C | donor_loss | 0.9900 |
| 12:51269241:CTAC:C | donor_loss | 0.9900 |
| 12:51269242:TAC:T | donor_loss | 0.9900 |
| 12:51269243:ACC:A | donor_loss | 0.9900 |
| 12:51269244:C:CT | donor_loss | 0.9900 |
AlphaMissense
1057 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:51242361:C:A | A137D | 0.999 |
| 12:51242391:T:A | V147D | 0.999 |
| 12:51242343:G:A | G131E | 0.998 |
| 12:51242370:C:A | A140E | 0.998 |
| 12:51241084:T:C | F116L | 0.997 |
| 12:51241086:T:A | F116L | 0.997 |
| 12:51241086:T:G | F116L | 0.997 |
| 12:51242342:G:A | G131R | 0.997 |
| 12:51242342:G:C | G131R | 0.997 |
| 12:51242365:G:C | Q138H | 0.997 |
| 12:51242365:G:T | Q138H | 0.997 |
| 12:51242367:T:C | L139P | 0.997 |
| 12:51242453:T:A | W168R | 0.996 |
| 12:51242453:T:C | W168R | 0.996 |
| 12:51242397:T:A | V149E | 0.995 |
| 12:51241082:G:T | R115I | 0.994 |
| 12:51242337:C:A | P129H | 0.994 |
| 12:51242352:C:A | P134H | 0.994 |
| 12:51242364:A:C | Q138P | 0.994 |
| 12:51242369:G:C | A140P | 0.994 |
| 12:51240453:T:C | Y42H | 0.993 |
| 12:51240459:G:A | E44K | 0.993 |
| 12:51241049:T:A | V104E | 0.993 |
| 12:51241079:C:A | A114D | 0.993 |
| 12:51241082:G:C | R115T | 0.993 |
| 12:51241085:T:C | F116S | 0.993 |
| 12:51242426:G:C | G159R | 0.993 |
| 12:51242438:G:C | G163R | 0.993 |
| 12:51242441:G:C | G164R | 0.993 |
| 12:51241066:T:G | Y110D | 0.992 |
dbSNP variants (sampled 300 via entrez): RS1000698375 (12:51244202 TTTTA>T), RS1001518070 (12:51243616 T>C), RS1001632632 (12:51245258 A>G), RS1001734922 (12:51237808 A>G), RS1001784234 (12:51237427 G>C), RS1001838676 (12:51246490 C>T), RS1002010130 (12:51237922 G>C,T), RS1002012634 (12:51243340 T>C), RS1002116408 (12:51238818 C>T), RS1002124623 (12:51238372 G>C), RS1002620429 (12:51241749 C>G,T), RS1002977029 (12:51241965 A>G), RS1004026867 (12:51246640 A>G,T), RS1004070694 (12:51241643 G>A), RS1004124316 (12:51241403 C>A,T)
Disease associations
OMIM: gene MIM:607431 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
30 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| trichostatin A | affects cotreatment, decreases expression | 3 |
| Smoke | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| kojic acid | increases expression | 1 |
| sodium arsenite | increases abundance, increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| diallyl trisulfide | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chloropicrin | increases expression | 1 |
| entinostat | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Bortezomib | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Vorinostat | decreases expression, affects cotreatment | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Arsenic | increases abundance, increases expression | 1 |
| Catechin | affects cotreatment, increases expression | 1 |
| Lipopolysaccharides | affects expression, affects response to substance | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Uranium Compounds | decreases expression | 1 |
| Antirheumatic Agents | decreases expression | 1 |
| Copper Sulfate | increases expression | 1 |
| tert-Butylhydroperoxide | decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2VP | Abcam HEK293T DAZAP2 KO | Transformed cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.