DDO
gene geneOn this page
Also known as DASOXDASPO
Summary
DDO (D-aspartate oxidase, HGNC:2727) is a protein-coding gene on chromosome 6q21, encoding D-aspartate oxidase (Q99489). Selectively catalyzes the oxidative deamination of acidic amino acids.
The protein encoded by this gene is a peroxisomal flavoprotein that catalyzes the oxidative deamination of D-aspartate and N-methyl D-aspartate. Flavin adenine dinucleotide or 6-hydroxyflavin adenine dinucleotide can serve as the cofactor in this reaction. Several transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 8528 — RefSeq curated summary.
At a glance
- GWAS associations: 20
- Clinical variants (ClinVar): 77 total
- Druggable target: yes
- MANE Select transcript:
NM_001372108
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2727 |
| Approved symbol | DDO |
| Name | D-aspartate oxidase |
| Location | 6q21 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DASOX, DASPO |
| Ensembl gene | ENSG00000203797 |
| Ensembl biotype | protein_coding |
| OMIM | 124450 |
| Entrez | 8528 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 10 protein_coding, 1 nonsense_mediated_decay
ENST00000368923, ENST00000368924, ENST00000479373, ENST00000854438, ENST00000854439, ENST00000854440, ENST00000854441, ENST00000951844, ENST00000951845, ENST00000951846, ENST00000951847
RefSeq mRNA: 7 — MANE Select: NM_001372108
NM_001368170, NM_001368172, NM_001368173, NM_001368174, NM_001368175, NM_001372108, NM_004032
CCDS: CCDS5082, CCDS5083
Canonical transcript exons
ENST00000368924 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000839913 | 110408334 | 110408442 |
| ENSE00003541060 | 110404774 | 110404950 |
| ENSE00003844124 | 110415467 | 110415575 |
| ENSE00003845411 | 110391784 | 110393342 |
| ENSE00003898558 | 110413291 | 110413466 |
Expression profiles
Bgee: expression breadth ubiquitous, 205 present calls, max score 85.09.
FANTOM5 (CAGE): breadth broad, TPM avg 1.5820 / max 108.5483, expressed in 618 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 75047 | 1.5820 | 618 |
Top tissues by expression
276 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| heart left ventricle | UBERON:0002084 | 85.09 | gold quality |
| cardiac ventricle | UBERON:0002082 | 84.72 | gold quality |
| apex of heart | UBERON:0002098 | 84.60 | gold quality |
| heart right ventricle | UBERON:0002080 | 82.03 | gold quality |
| myocardium | UBERON:0002349 | 80.88 | silver quality |
| left ventricle myocardium | UBERON:0006566 | 80.79 | gold quality |
| heart | UBERON:0000948 | 80.62 | gold quality |
| right adrenal gland | UBERON:0001233 | 80.29 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 79.90 | gold quality |
| right atrium auricular region | UBERON:0006631 | 79.89 | gold quality |
| left adrenal gland | UBERON:0001234 | 79.73 | gold quality |
| nephron tubule | UBERON:0001231 | 79.37 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 79.32 | gold quality |
| cardiac atrium | UBERON:0002081 | 79.24 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 78.89 | gold quality |
| right lobe of liver | UBERON:0001114 | 78.17 | gold quality |
| putamen | UBERON:0001874 | 77.80 | gold quality |
| liver | UBERON:0002107 | 77.44 | gold quality |
| adrenal cortex | UBERON:0001235 | 77.34 | gold quality |
| caudate nucleus | UBERON:0001873 | 77.34 | gold quality |
| endothelial cell | CL:0000115 | 76.97 | silver quality |
| muscle of leg | UBERON:0001383 | 76.91 | gold quality |
| adrenal gland | UBERON:0002369 | 76.73 | gold quality |
| gastrocnemius | UBERON:0001388 | 76.43 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 76.23 | silver quality |
| nucleus accumbens | UBERON:0001882 | 76.20 | gold quality |
| duodenum | UBERON:0002114 | 75.48 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 75.14 | gold quality |
| muscle organ | UBERON:0001630 | 74.85 | gold quality |
| kidney epithelium | UBERON:0004819 | 74.75 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 3.52 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 11)
- data do not suggest that DDO plays a role in the etiology of schizophrenia in the German population (PMID:19125110)
- There is a significant increase in DDO mRNA expression in the prefrontal cortex of patients with schizophrenia compared to controls. (PMID:25689573)
- Characterization of the enzymatic and structural properties of human D-aspartate oxidase and comparison with those of the rat and mouse enzymes (PMID:25747990)
- This study is the first to report robust age associations for DNA methylation in MYOF and DDO, both of which have plausible functional roles in aging (PMID:28255110)
- SNPSs R216Q and S308N reduce enzyme activity towards acidic d-amino acids, decrease the binding affinity for the coenzyme flavin adenine dinucleotide and decrease the temperature stability. Expression of DDO genes carrying the R216Q or S308N SNP substitutions may increase the d-aspartate content in humans and alter homeostasis of several other amino acids. (PMID:28629864)
- The strongest DNA methylation changes in atopic asthma were detected in the promoter region of SMAD3 gene at chr 15q22.33 and introns of DDO/METTL24 genes at 6q21. (PMID:29729188)
- three-dimensional structural analysis contributes insights into the structure-function relationships of human DASPO (PMID:31914658)
- Cellular studies of the two main isoforms of human d-aspartate oxidase. (PMID:33650155)
- Genetic variants in DDO and PEX5L in peroxisome-related pathways predict non-small cell lung cancer survival. (PMID:35502931)
- D-aspartate oxidase gene duplication induces social recognition memory deficit in mice and intellectual disabilities in humans. (PMID:35915065)
- On the regulation of human D-aspartate oxidase. (PMID:37805834)
Cross-species orthologs
9 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ddo | ENSDARG00000079664 |
| mus_musculus | Ddo | ENSMUSG00000063428 |
| rattus_norvegicus | Ddo | ENSRNOG00000000582 |
| drosophila_melanogaster | Daao2 | FBGN0031860 |
| drosophila_melanogaster | Daao1 | FBGN0033543 |
| caenorhabditis_elegans | WBGENE00008127 | |
| caenorhabditis_elegans | WBGENE00017565 | |
| caenorhabditis_elegans | WBGENE00017648 | |
| caenorhabditis_elegans | WBGENE00022076 |
Paralogs (1): DAO (ENSG00000110887)
Protein
Protein identifiers
D-aspartate oxidase — Q99489 (reviewed: Q99489)
All UniProt accessions (3): C9K4X7, F2Z2E0, Q99489
UniProt curated annotations — full annotation on UniProt →
Function. Selectively catalyzes the oxidative deamination of acidic amino acids. Suppresses the level of D-aspartate in the brain, an amino acid that can act as an agonist for glutamate receptors. Protects the organism from the toxicity of D-amino acids. May also function in the intestine.
Subunit / interactions. Monomer. Interacts with PEX5; the interaction is direct and required for localization of DDO to the peroxisome. Interacts with DAOA; the interaction is direct and increases the degradation rate of DDO.
Subcellular location. Peroxisome matrix. Cytoplasm. Cytosol Peroxisome matrix Peroxisome matrix.
Tissue specificity. Expressed in epithelial cells of the proximal nephron tubules in the renal cortex (at protein level). In the brain, expressed in the frontal, temporal, and occipital lobes of the cortex, hippocampus, striatum, diencephalon, brainstem, cerebellum, spinal cord, plexus choroiderus and ependyma (at protein level). Expression is increased in the prefrontal cortex of schizophrenic patients. Levels are normal in the superior frontal gyrus of patients with Alzheimer’s disease.
Post-translational modifications. May be S-nitrosylated.
Activity regulation. Inhibited by the benzodiazepine olanzapine. Inhibited by aminooxyacetic acid, thiolactomycin, malonate and meso-tartrate. Clozapine, haloperidol and chlorpromazine have no effect on activity. Not inhibited by sodium, potassium, magnesium, iron, calcium, cobalt, copper, nickel, manganese or zinc ions. Not inhibited by AMP, ADP, ATP, or cAMP. Not inhibited by pyridoxal 5’-phosphate.
Miscellaneous. Found in the hippocampus of female patients affected by Alzheimer’s disease.
Similarity. Belongs to the DAMOX/DASOX family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q99489-1 | DDO-1, A, DASPO_341 | yes |
| Q99489-2 | DDO-2, DASPO_282 | |
| Q99489-3 | 3, DASPO_369 | |
| Q99489-4 | 4 |
RefSeq proteins (7): NP_001355099, NP_001355101, NP_001355102, NP_001355103, NP_001355104, NP_001359037, NP_004023 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006076 | FAD-dep_OxRdtase | Domain |
| IPR006181 | D-amino_acid_oxidase_CS | Conserved_site |
| IPR023209 | DAO | Family |
Pfam: PF01266
Enzyme classification (BRENDA):
- EC 1.4.3.1 — D-aspartate oxidase (BRENDA: 41 organisms, 94 substrates, 96 inhibitors, 147 Km, 70 kcat entries)
Substrate kinetics (BRENDA)
27 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| D-ASPARTATE | 0.38–8.77 | 29 |
| N-METHYL-D-ASPARTATE | 0.2–103 | 20 |
| D-GLUTAMATE | 0.23–166 | 18 |
| D-ASP | 1–13.4 | 16 |
| D-GLU | 0.68–106 | 9 |
| N-METHYL-D-ASP | 2.85–27.9 | 8 |
| D-ASPARAGINE | 0.38–240 | 7 |
| O2 | 0.17–2.01 | 6 |
| D-GLUTAMINE | 25.7–815 | 4 |
| D-PROLINE | 0.9–440 | 4 |
| D-ASPARTATE DIMETHYLESTER | 150–540 | 2 |
| D-GLN | 21–39.4 | 2 |
| D-HISTIDINE | 8.8–96 | 2 |
| D-MET | 8.5–31.8 | 2 |
| D-PHE | 14.3–34.8 | 2 |
Catalyzed reactions (Rhea), 2 shown:
- D-glutamate + O2 + H2O = 2-oxoglutarate + H2O2 + NH4(+) (RHEA:10028)
- D-aspartate + O2 + H2O = oxaloacetate + H2O2 + NH4(+) (RHEA:12512)
UniProt features (52 total): strand 16, helix 12, binding site 8, sequence variant 6, turn 3, splice variant 2, sequence conflict 2, chain 1, short sequence motif 1, mutagenesis site 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6RKF | X-RAY DIFFRACTION | 3.22 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q99489-F1 | 96.36 | 0.97 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8): 36; 37; 43; 44; 50; 307; 311; 312
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 141–143 | slightly decreases activity. |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-389661 | Glyoxylate metabolism and glycine degradation |
| R-HSA-9033241 | Peroxisomal protein import |
MSigDB gene sets: 106 (showing top):
GOBP_BEHAVIOR, GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, GOBP_REGULATION_OF_HORMONE_LEVELS, GOBP_INSEMINATION, GOBP_DICARBOXYLIC_ACID_METABOLIC_PROCESS, LINDGREN_BLADDER_CANCER_CLUSTER_2A_UP, GOBP_ORGANIC_ACID_CATABOLIC_PROCESS, GOBP_REPRODUCTIVE_BEHAVIOR, GOBP_ORGANIC_ACID_METABOLIC_PROCESS, GOBP_MULTI_MULTICELLULAR_ORGANISM_PROCESS, GOBP_SMALL_MOLECULE_CATABOLIC_PROCESS, MORF_BMPR2, GOBP_GROOMING_BEHAVIOR, MULLIGHAN_NPM1_SIGNATURE_3_DN, GOBP_AMINO_ACID_CATABOLIC_PROCESS
GO Biological Process (11): aspartate metabolic process (GO:0006531), L-aspartate catabolic process (GO:0006533), insemination (GO:0007320), grooming behavior (GO:0007625), regulation of cell communication (GO:0010646), D-amino acid catabolic process (GO:0019478), hormone metabolic process (GO:0042445), nervous system process (GO:0050877), L-amino acid catabolic process (GO:0170035), proteinogenic amino acid catabolic process (GO:0170040), D-amino acid metabolic process (GO:0046416)
GO Molecular Function (6): D-aspartate oxidase activity (GO:0008445), D-glutamate oxidase activity (GO:0047821), FAD binding (GO:0071949), D-amino-acid oxidase activity (GO:0003884), protein binding (GO:0005515), oxidoreductase activity (GO:0016491)
GO Cellular Component (4): cytoplasm (GO:0005737), peroxisome (GO:0005777), peroxisomal matrix (GO:0005782), cytosol (GO:0005829)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Metabolism of amino acids and derivatives | 1 |
| Protein localization | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| amino acid catabolic process | 2 |
| carboxylic acid catabolic process | 2 |
| D-amino-acid oxidase activity | 2 |
| cellular anatomical structure | 2 |
| amino acid metabolic process | 1 |
| dicarboxylic acid metabolic process | 1 |
| aspartate metabolic process | 1 |
| dicarboxylic acid catabolic process | 1 |
| L-amino acid catabolic process | 1 |
| proteinogenic amino acid catabolic process | 1 |
| copulation | 1 |
| multi-organism reproductive process | 1 |
| multi-multicellular organism process | 1 |
| multicellular organismal reproductive process | 1 |
| behavior | 1 |
| cell communication | 1 |
| regulation of cellular process | 1 |
| D-amino acid metabolic process | 1 |
| non-proteinogenic amino acid catabolic process | 1 |
| metabolic process | 1 |
| regulation of hormone levels | 1 |
| system process | 1 |
| L-amino acid metabolic process | 1 |
| proteinogenic amino acid metabolic process | 1 |
| non-proteinogenic amino acid metabolic process | 1 |
| flavin adenine dinucleotide binding | 1 |
| primary methylamine oxidase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| intracellular anatomical structure | 1 |
| microbody | 1 |
| peroxisome | 1 |
| microbody lumen | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
1475 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DDO | SRR | Q9GZT4 | 642 |
| DDO | PIPOX | Q9P0Z9 | 575 |
| DDO | PAOX | Q6QHF9 | 496 |
| DDO | GOT1L1 | Q8NHS2 | 475 |
| DDO | AGXT | P21549 | 469 |
| DDO | TMEM209 | Q96SK2 | 442 |
| DDO | METTL24 | Q5JXM2 | 433 |
| DDO | HAO1 | Q9UJM8 | 429 |
| DDO | TYSND1 | Q2T9J0 | 392 |
| DDO | STRC | Q7RTU9 | 382 |
| DDO | HAO2 | Q9NYQ3 | 374 |
| DDO | NOXRED1 | Q6NXP6 | 366 |
| DDO | LYRM7 | Q5U5X0 | 353 |
| DDO | PUM3 | Q15397 | 352 |
| DDO | LONP2 | Q86WA8 | 350 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | CNOT1 | psi-mi:“MI:0914”(association) | 0.480 |
| COPS5 | DDO | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (4): DDO (Synthetic Lethality), PEX5 (Reconstituted Complex), DDO (Protein-peptide), DDO (Two-hybrid)
ESM2 similar proteins: A0A6N3IN21, A3KCL7, A4IFH5, A7MBC0, A7MBI7, D3ZDK7, D3ZDM7, E1BNQ4, P09367, P10950, P11172, P13439, P17256, P20132, P24298, P25409, P31754, P46597, P50053, P97328, Q02974, Q03426, Q0VCW4, Q1JPD3, Q3B8E3, Q3TY86, Q3ZKN0, Q5BJJ5, Q5E9T8, Q5M7T9, Q5R514, Q5R824, Q5RD71, Q5RFE6, Q6PCB7, Q6SKR2, Q80W22, Q8CHP8, Q8CIM3, Q8HZJ0
Diamond homologs: A0A095C6S0, A0A095CCB2, A0A499UB99, A3KCL7, C0HMB1, C4R4G9, D3ZDM7, J9VPE7, J9VRT1, P24552, P31228, P80324, Q1AYM8, Q556W1, Q75WF1, Q922Z0, Q99042, Q99489, Q9HGY3, Q9X7P6, Q9Y7N4, A0A7E6FSU6, A2V9Y8, A8WXM1, A8XJ44, O01739, O35078, O45307, P00371, P14920, P18894, P22942, Q19564, Q95XG9, Q9Z1M5, Q9Z302, T2HG31, A5U3S4, P9WP26, P9WP27
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
77 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 69 |
| Likely benign | 4 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
870 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:110414277:AGTCT:A | donor_gain | 1.0000 |
| 6:110408332:AC:A | donor_gain | 0.9900 |
| 6:110408333:CC:C | donor_gain | 0.9900 |
| 6:110410592:A:T | acceptor_gain | 0.9900 |
| 6:110393341:TCCTA:T | acceptor_loss | 0.9800 |
| 6:110393343:C:CC | acceptor_gain | 0.9800 |
| 6:110393343:C:T | acceptor_loss | 0.9800 |
| 6:110393344:T:A | acceptor_loss | 0.9800 |
| 6:110408450:C:CT | acceptor_gain | 0.9800 |
| 6:110408462:CAAAG:C | acceptor_gain | 0.9800 |
| 6:110413467:C:CC | acceptor_gain | 0.9700 |
| 6:110408328:ACTT:A | donor_loss | 0.9600 |
| 6:110408329:CTTA:C | donor_loss | 0.9600 |
| 6:110408330:TTA:T | donor_loss | 0.9600 |
| 6:110408331:TA:T | donor_loss | 0.9600 |
| 6:110408332:A:AT | donor_loss | 0.9600 |
| 6:110408333:C:G | donor_loss | 0.9600 |
| 6:110408443:C:CC | acceptor_gain | 0.9600 |
| 6:110410584:A:C | acceptor_gain | 0.9600 |
| 6:110415462:AGTAC:A | donor_loss | 0.9600 |
| 6:110415463:GTACC:G | donor_loss | 0.9600 |
| 6:110415464:TACCT:T | donor_loss | 0.9600 |
| 6:110415465:A:C | donor_loss | 0.9600 |
| 6:110415466:C:T | donor_loss | 0.9600 |
| 6:110408327:CACT:C | donor_loss | 0.9500 |
| 6:110413285:TCTCA:T | donor_loss | 0.9500 |
| 6:110413286:CTCA:C | donor_loss | 0.9500 |
| 6:110413287:TCA:T | donor_loss | 0.9500 |
| 6:110413288:CAC:C | donor_loss | 0.9500 |
| 6:110413289:ACC:A | donor_loss | 0.9500 |
AlphaMissense
2389 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000136346 (6:110396131 G>A,T), RS1000200224 (6:110416795 G>T), RS1000321543 (6:110390570 G>A,C), RS1000340903 (6:110406104 A>G), RS1000364417 (6:110402359 A>C), RS1000398020 (6:110416674 G>A), RS1000441523 (6:110390204 G>A), RS1000635176 (6:110412640 C>T), RS1000900690 (6:110401101 G>A), RS1000986379 (6:110400602 A>G), RS1001034900 (6:110411465 T>C), RS1001048704 (6:110389640 C>A), RS1001058210 (6:110388713 G>A,T), RS1001110356 (6:110395652 G>T), RS1001117921 (6:110403101 T>C)
Disease associations
OMIM: gene MIM:124450 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
20 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003155_53 | Systemic lupus erythematosus | 1.000000e-07 |
| GCST003518_86 | Daytime sleep phenotypes | 3.000000e-07 |
| GCST004599_43 | Mean platelet volume | 8.000000e-28 |
| GCST004603_29 | Platelet count | 2.000000e-14 |
| GCST004616_182 | Platelet distribution width | 4.000000e-53 |
| GCST004616_25 | Platelet distribution width | 2.000000e-55 |
| GCST006879_15 | Blood metabolite levels | 6.000000e-25 |
| GCST006879_16 | Blood metabolite levels | 5.000000e-08 |
| GCST006879_17 | Blood metabolite levels | 2.000000e-26 |
| GCST006879_23 | Blood metabolite levels | 7.000000e-31 |
| GCST006879_24 | Blood metabolite levels | 3.000000e-25 |
| GCST006879_3 | Blood metabolite levels | 8.000000e-29 |
| GCST006879_4 | Blood metabolite levels | 7.000000e-37 |
| GCST90002390_445 | Mean corpuscular hemoglobin | 7.000000e-13 |
| GCST90002392_691 | Mean corpuscular volume | 1.000000e-17 |
| GCST90002395_483 | Mean platelet volume | 2.000000e-12 |
| GCST90002395_484 | Mean platelet volume | 8.000000e-13 |
| GCST90002401_533 | Platelet distribution width | 2.000000e-26 |
| GCST90002401_534 | Platelet distribution width | 1.000000e-117 |
| GCST90002402_702 | Platelet count | 7.000000e-17 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007828 | daytime rest measurement |
| EFO:0004309 | platelet count |
| EFO:0007984 | platelet component distribution width |
| EFO:0004527 | mean corpuscular hemoglobin |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5887 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
21 measured of 22 human assays (23 total across all organisms); most potent 21 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| 3-hydroxyquinolin-2(1H)-one, 3 | IC50 | 3 nM |
| naphthyridinone analog., 27 | IC50 | 3 nM |
| 3-hydroxyquinolin-2(1H)-one, 10 | IC50 | 4 nM |
| 3-hydroxyquinolin-2(1H)-one, 26 | IC50 | 5 nM |
| 3-hydroxyquinolin-2(1H)-one, 6 | IC50 | 8 nM |
| 3-hydroxyquinolin-2(1H)-one, 15 | IC50 | 8 nM |
| naphthyridinone analog.,18 | IC50 | 8 nM |
| 4H-furo[3,2-b]pyrrole-5-carboxylic acid | IC50 | 9 nM |
| 3-hydroxyquinolin-2(1H)-one, 5 | IC50 | 9 nM |
| 3-hydroxyquinolin-2(1H)-one, 4 | IC50 | 10 nM |
| 3-hydroxyquinolin-2(1H)-one, 14 | IC50 | 16 nM |
| naphthyridinone analog.,19 | IC50 | 32 nM |
| 3-hydroxyquinolin-2(1H)-one, 7 | IC50 | 33 nM |
| 3-hydroxyquinolin-2(1H)-one, 11 | IC50 | 38 nM |
| 3-hydroxyquinolin-2(1H)-one, 8 | IC50 | 100 nM |
| naphthyridinone analog.,21 | IC50 | 128 nM |
| 3-hydroxyquinolin-2(1H)-one, 9 | IC50 | 155 nM |
| 3-hydroxyquinolin-2(1H)-one, 12 | IC50 | 197 nM |
| naphthyridinone analog.,20 | IC50 | 784 nM |
| 3-hydroxyquinolin-2(1H)-one, 17 | IC50 | 14400 nM |
| 3-hydroxyquinolin-2(1H)-one, 23 | IC50 | 17300 nM |
ChEMBL bioactivities
3 potent at pChembl≥5 of 14 total, top 3 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.07 | IC50 | 855 | nM | CHEMBL146227 |
| 5.42 | Ki | 3800 | nM | CHEMBL1491941 |
| 5.33 | IC50 | 4620 | nM | CHEMBL494235 |
PubChem BioAssay actives
5 with measured affinity, of 143 total; 3 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 3-hydroxy-1H-quinolin-2-one | 1799106: DAAO in Vitro Activity Assay from Article 10.1021/jm900128w: “Discovery, SAR, and pharmacokinetics of a novel 3-hydroxyquinolin-2(1H)-one series of potent D-amino acid oxidase (DAAO) inhibitors.” | ic50 | 0.8550 | uM |
| 5-aminopyridine-3-carboxylic acid | 1247846: Binding affinity to human recombinant DDO | ki | 3.8000 | uM |
| 8-fluoro-3-hydroxy-1H-quinolin-2-one | 1799106: DAAO in Vitro Activity Assay from Article 10.1021/jm900128w: “Discovery, SAR, and pharmacokinetics of a novel 3-hydroxyquinolin-2(1H)-one series of potent D-amino acid oxidase (DAAO) inhibitors.” | ic50 | 4.6200 | uM |
CTD chemical–gene interactions
20 total (human), top 20 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| aristolochic acid I | increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| propionaldehyde | decreases expression | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| terbufos | increases methylation | 1 |
| nickel sulfate | increases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Acetaminophen | decreases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Fonofos | increases methylation | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Parathion | increases methylation | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Isotretinoin | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
| S-Nitrosoglutathione | increases expression | 1 |
ChEMBL screening assays
13 unique, capped per target: 13 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2327933 | Binding | Inhibition of human recombinant N-terminal His-tagged DDO expressed in Escherichia coli BL21(DE3) using D-aspartate as substrate by colorimetric assay | Identification of novel D-amino acid oxidase inhibitors by in silico screening and their functional characterization in vitro. — J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.