DDT
gene geneOn this page
Also known as DDCTMIF2MIF-2D-DT
Summary
DDT (D-dopachrome tautomerase, HGNC:2732) is a protein-coding gene on chromosome 22q11.23, encoding D-dopachrome decarboxylase (P30046). Tautomerization of D-dopachrome with decarboxylation to give 5,6-dihydroxyindole (DHI).
D-dopachrome tautomerase converts D-dopachrome into 5,6-dihydroxyindole. The DDT gene is related to the migration inhibitory factor (MIF) in terms of sequence, enzyme activity, and gene structure. DDT and MIF are closely linked on chromosome 22.
Source: NCBI Gene 1652 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 5 total
- Druggable target: yes
- MANE Select transcript:
NM_001084392
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2732 |
| Approved symbol | DDT |
| Name | D-dopachrome tautomerase |
| Location | 22q11.23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DDCT, MIF2, MIF-2, D-DT |
| Ensembl gene | ENSG00000099977 |
| Ensembl biotype | protein_coding |
| OMIM | 602750 |
| Entrez | 1652 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 10 protein_coding, 2 retained_intron
ENST00000350608, ENST00000398344, ENST00000403754, ENST00000428792, ENST00000430101, ENST00000444947, ENST00000703965, ENST00000703966, ENST00000897329, ENST00000938492, ENST00000938493, ENST00000938494
RefSeq mRNA: 4 — MANE Select: NM_001084392
NM_001084392, NM_001355, NM_001381852, NM_001397485
CCDS: CCDS13820, CCDS93131
Canonical transcript exons
ENST00000398344 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000879495 | 23971370 | 23971623 |
| ENSE00001895724 | 23974307 | 23974441 |
| ENSE00003837199 | 23973768 | 23973943 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 99.27.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.6200 / max 100.4801, expressed in 1807 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 209420 | 12.6200 | 1807 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lobe of liver | UBERON:0001114 | 99.27 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 99.01 | gold quality |
| liver | UBERON:0002107 | 98.92 | gold quality |
| body of pancreas | UBERON:0001150 | 98.67 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 98.31 | gold quality |
| apex of heart | UBERON:0002098 | 98.12 | gold quality |
| body of stomach | UBERON:0001161 | 98.11 | gold quality |
| transverse colon | UBERON:0001157 | 97.62 | gold quality |
| heart left ventricle | UBERON:0002084 | 97.61 | gold quality |
| fundus of stomach | UBERON:0001160 | 97.59 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 97.54 | gold quality |
| right adrenal gland | UBERON:0001233 | 97.45 | gold quality |
| right atrium auricular region | UBERON:0006631 | 97.40 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 97.31 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.21 | gold quality |
| heart | UBERON:0000948 | 97.12 | gold quality |
| duodenum | UBERON:0002114 | 97.09 | gold quality |
| left adrenal gland | UBERON:0001234 | 97.02 | gold quality |
| stomach | UBERON:0000945 | 97.01 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 96.94 | gold quality |
| lower esophagus | UBERON:0013473 | 96.93 | gold quality |
| substantia nigra | UBERON:0002038 | 96.89 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 96.87 | gold quality |
| omental fat pad | UBERON:0010414 | 96.85 | gold quality |
| prostate gland | UBERON:0002367 | 96.83 | gold quality |
| esophagus mucosa | UBERON:0002469 | 96.83 | gold quality |
| cortex of kidney | UBERON:0001225 | 96.75 | gold quality |
| prefrontal cortex | UBERON:0000451 | 96.73 | gold quality |
| small intestine | UBERON:0002108 | 96.73 | gold quality |
| esophagus | UBERON:0001043 | 96.68 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-9 | yes | 59.25 |
| E-ANND-3 | yes | 11.62 |
| E-MTAB-6524 | no | 106.64 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AR
miRNA regulators (miRDB)
14 targeting DDT, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-3605-5P | 99.96 | 67.12 | 932 |
| HSA-MIR-6515-3P | 99.82 | 68.19 | 1933 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-5007-3P | 99.51 | 68.14 | 1242 |
| HSA-MIR-330-5P | 98.73 | 67.63 | 1788 |
| HSA-MIR-518C-5P | 98.53 | 69.20 | 1640 |
| HSA-MIR-6764-3P | 98.44 | 67.64 | 1153 |
| HSA-MIR-6824-3P | 98.44 | 67.62 | 1154 |
| HSA-MIR-326 | 98.25 | 66.44 | 1565 |
| HSA-MIR-3679-5P | 94.75 | 66.46 | 862 |
Literature-anchored findings (GeneRIF, showing 24)
- role of tautomerase active site of macrophage migration inhibitory factor as a potential target for discovery of novel anti-inflammatory agents (PMID:11997397)
- DDT is for the first time demonstrated in the skin and can be related to inflammation, and its covariation with MIF strengthens this observation. (PMID:12823441)
- D-dopachrome tautomerase (D-DT) and macrophage migration inhibitory factor, individually and additively, promote vascular endothelial growth factor and CXCL8 expression in human lung adenocarcinoma cell lines. (PMID:18684922)
- D-DT-dependent beta-catenin stabilization is regulated by COX-2 expression, suggesting the existence of an amplification loop between COX-2- and beta-catenin-mediated transcription in these cells (PMID:21071513)
- These data indicate that D-DT is a MIF-like cytokine. (PMID:21817065)
- DDT acts on adipocytes to regulate lipid metabolism through AMPK and/or PKA pathway(s) and improves glucose intolerance caused by obesity. (PMID:22428043)
- D-dopachrome tautomerase secreted from adipocytes acts on preadipocytes to promote IL-6 expression and to inhibit adipogenesis by suppressing the induction of genes encoding adipogenic regulators (PMID:22951300)
- findings identify DDT as a functionally redundant but more potent cytokine to MIF in cancer and suggest that current attempts to inhibit MIF signaling may fail because of DDT compensation. (PMID:24356968)
- Both p53 wildtype and mutant human lung adenocarcinoma tumors rely on MIF family members for maximal cell growth and survival. (PMID:24932684)
- High MIF-2 levels are predictive of the development of organ dysfunction in myocardial ischemia reperfusion injury. (PMID:26234719)
- Gene expression level of DDT is significantly higher in AD patients when compared to normal controls. (PMID:26943237)
- DDT was increased in burn patients. (PMID:27209369)
- Study demonstrated that DDT was over- expressed in pancreatic ductal adenocarcinoma (PDAC) tissues and cell lines in a pattern correlated with MIF, and knockdown of DDT and MIF in PANC- 1 cells cooperatively inhibited cell proliferation, invasion and tumor formation. The tautomerase activities of both MIF and DDT are required for their negative regulatory role in p53 and their tumor-promoting functions. (PMID:27434219)
- These results have implications for the manner in which D-DT and MIF compete with each other for binding to the CD74 receptor and for the relative potency of DRa1-MOG-35-55 and RTL1000 for competitive inhibition of D-DT and MIF binding and activation through CD74. (PMID:27573366)
- The knockdown of D-DT and MIF, individually and additively, inhibited the proliferation, migration, and invasion in HeLa and SiHa cells and restrained the growth of xenograft tumor. (PMID:28338494)
- D-dopachrome tautomerase transcription may be regulated in a cell-dependent manner, and was enhanced by AMPK activation in SGBS adipocytes through inhibiting the mTOR signaling (PMID:28445821)
- results show that the minor allele frequency of rs755622 and expression of DDT are significantly increased in males for MS subjects and this minor allele variant can significantly upregulate DDT expression for males but not females, which suggests that the regulation of DDT expression level by rs755622 can affect MS progression in males. (PMID:30140701)
- Cardiomyocyte d-dopachrome tautomerase protects against heart failure. (PMID:31484822)
- Genetic regulation of gene expression of MIF family members in lung tissue. (PMID:33046825)
- Macrophage Migration Inhibitory Factor (MIF) and Its Homologue d-Dopachrome Tautomerase (DDT) Inversely Correlate with Inflammation in Discoid Lupus Erythematosus. (PMID:33401503)
- D-dopachrome tautomerase contributes to lung epithelial repair via atypical chemokine receptor 3-dependent Akt signaling. (PMID:34098338)
- Knockdown of D-dopachrome Tautomerase Inhibits Cell Proliferation in Human HepG2 Cell Line. (PMID:34281877)
- A structurally preserved allosteric site in the MIF superfamily affects enzymatic activity and CD74 activation in D-dopachrome tautomerase. (PMID:34384784)
- D-dopachrome tautomerase in cardiovascular and inflammatory diseases-A new kid on the block or just another MIF? (PMID:36269019)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ddt | ENSDARG00000044751 |
| mus_musculus | Ddt | ENSMUSG00000001666 |
| rattus_norvegicus | ENSRNOG00000083406 |
Paralogs (2): DDTL (ENSG00000099974), MIF (ENSG00000240972)
Protein
Protein identifiers
D-dopachrome decarboxylase — P30046 (reviewed: P30046)
Alternative names: D-dopachrome tautomerase, Phenylpyruvate tautomerase II
All UniProt accessions (5): P30046, B5MC82, H7C342, J3KQ18, Q53Y51
UniProt curated annotations — full annotation on UniProt →
Function. Tautomerization of D-dopachrome with decarboxylation to give 5,6-dihydroxyindole (DHI).
Subunit / interactions. Homotrimer.
Subcellular location. Cytoplasm.
Tissue specificity. Highly expressed in the liver and at lower levels in the heart, lung and pancreas.
Similarity. Belongs to the MIF family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P30046-1 | 1 | yes |
| P30046-2 | 2 |
RefSeq proteins (4): NP_001077861, NP_001346, NP_001368781, NP_001384414 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001398 | Macrophage_inhib_fac | Family |
| IPR014347 | Tautomerase/MIF_sf | Homologous_superfamily |
| IPR019829 | Macrophage_inhib_fac_CS | Conserved_site |
Pfam: PF01187
Enzyme classification (BRENDA):
- EC 4.1.1.84 — D-dopachrome decarboxylase (BRENDA: 5 organisms, 9 substrates, 15 inhibitors, 7 Km, 4 kcat entries)
Substrate kinetics (BRENDA)
5 substrates with measured Km, best-characterized 5. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| D-DOPACHROME | 0.42–1.5 | 3 |
| 4-CHLOROPHENYLPYRUVATE | 2.17 | 1 |
| 4-HYDROXYPHENYLPYRUVATE | 3.6 | 1 |
| 4-METHOXYPHENYLPYRUVATE | 6.7 | 1 |
| PHENYLPYRUVATE | 2.4 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- D-dopachrome + H(+) = 5,6-dihydroxyindole + CO2 (RHEA:18441)
UniProt features (20 total): helix 7, strand 6, modified residue 2, initiator methionine 1, chain 1, splice variant 1, mutagenesis site 1, sequence conflict 1
Structure
Experimental structures (PDB)
23 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9BB0 | X-RAY DIFFRACTION | 0.98 |
| 7MW7 | X-RAY DIFFRACTION | 1.1 |
| 3KAN | X-RAY DIFFRACTION | 1.13 |
| 8VFL | X-RAY DIFFRACTION | 1.23 |
| 8VG7 | X-RAY DIFFRACTION | 1.24 |
| 7MSE | X-RAY DIFFRACTION | 1.27 |
| 8VFN | X-RAY DIFFRACTION | 1.29 |
| 8DBB | X-RAY DIFFRACTION | 1.3 |
| 8VFW | X-RAY DIFFRACTION | 1.31 |
| 7MRU | X-RAY DIFFRACTION | 1.33 |
| 8VG8 | X-RAY DIFFRACTION | 1.33 |
| 8VFO | X-RAY DIFFRACTION | 1.35 |
| 6C5F | X-RAY DIFFRACTION | 1.4 |
| 9O3U | X-RAY DIFFRACTION | 1.49 |
| 8VG5 | X-RAY DIFFRACTION | 1.5 |
| 9O3T | X-RAY DIFFRACTION | 1.53 |
| 9O3R | X-RAY DIFFRACTION | 1.54 |
| 1DPT | X-RAY DIFFRACTION | 1.54 |
| 7MRV | X-RAY DIFFRACTION | 1.57 |
| 8VFK | X-RAY DIFFRACTION | 1.59 |
| 9O3S | X-RAY DIFFRACTION | 1.64 |
| 4Q3F | X-RAY DIFFRACTION | 1.8 |
| 8VDY | X-RAY DIFFRACTION | 2.44 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P30046-F1 | 97.99 | 1.00 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 2, 33
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 2 | loss of enzyme activity. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 204 (showing top):
GOBP_PHENOL_CONTAINING_COMPOUND_METABOLIC_PROCESS, MODULE_52, GRUETZMANN_PANCREATIC_CANCER_DN, GOBP_PHENOL_CONTAINING_COMPOUND_BIOSYNTHETIC_PROCESS, GOBP_MYELOID_LEUKOCYTE_MIGRATION, GOBP_CELL_CHEMOTAXIS, GOBP_INFLAMMATORY_RESPONSE, ENK_UV_RESPONSE_KERATINOCYTE_UP, GOBP_POSITIVE_REGULATION_OF_MAPK_CASCADE, DACOSTA_UV_RESPONSE_VIA_ERCC3_UP, HSIAO_HOUSEKEEPING_GENES, MODULE_335, GOBP_POSITIVE_REGULATION_OF_CYTOKINE_PRODUCTION, GOBP_REGULATION_OF_LEUKOCYTE_MIGRATION, GOBP_POSITIVE_REGULATION_OF_TUMOR_NECROSIS_FACTOR_SUPERFAMILY_CYTOKINE_PRODUCTION
GO Biological Process (5): negative regulation of macrophage chemotaxis (GO:0010760), positive regulation of tumor necrosis factor production (GO:0032760), melanin biosynthetic process (GO:0042438), positive regulation of inflammatory response (GO:0050729), positive regulation of ERK1 and ERK2 cascade (GO:0070374)
GO Molecular Function (5): dopachrome isomerase activity (GO:0004167), cytokine receptor binding (GO:0005126), D-dopachrome decarboxylase activity (GO:0033981), phenylpyruvate tautomerase activity (GO:0050178), lyase activity (GO:0016829)
GO Cellular Component (3): obsolete extracellular space (GO:0005615), cytoplasm (GO:0005737), extracellular exosome (GO:0070062)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| negative regulation of leukocyte chemotaxis | 1 |
| regulation of macrophage chemotaxis | 1 |
| macrophage chemotaxis | 1 |
| negative regulation of macrophage migration | 1 |
| tumor necrosis factor production | 1 |
| regulation of tumor necrosis factor production | 1 |
| positive regulation of tumor necrosis factor superfamily cytokine production | 1 |
| melanin metabolic process | 1 |
| secondary metabolite biosynthetic process | 1 |
| pigment biosynthetic process | 1 |
| phenol-containing compound biosynthetic process | 1 |
| inflammatory response | 1 |
| positive regulation of defense response | 1 |
| positive regulation of response to external stimulus | 1 |
| regulation of inflammatory response | 1 |
| positive regulation of MAPK cascade | 1 |
| ERK1 and ERK2 cascade | 1 |
| regulation of ERK1 and ERK2 cascade | 1 |
| intramolecular oxidoreductase activity, transposing C=C bonds | 1 |
| signaling receptor binding | 1 |
| carboxy-lyase activity | 1 |
| intramolecular oxidoreductase activity, interconverting keto- and enol-groups | 1 |
| catalytic activity | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
508 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DDT | CD74 | P04233 | 965 |
| DDT | DCT | P40126 | 696 |
| DDT | CXCR4 | P30991 | 542 |
| DDT | CXCR2 | P25025 | 505 |
| DDT | CD44 | P16070 | 501 |
| DDT | COPS5 | Q92905 | 453 |
| DDT | GSTT2B | P0CG30 | 417 |
| DDT | GSTT4 | A0A1W2PR19 | 380 |
| DDT | LRRC75B | Q2VPJ9 | 371 |
| DDT | C22orf15 | Q8WYQ4 | 350 |
| DDT | CXCR1 | P25024 | 317 |
| DDT | AMH | P03971 | 304 |
| DDT | ITGAL | P20701 | 303 |
| DDT | GAPDH | P00354 | 295 |
| DDT | ATP5MGL | Q7Z4Y8 | 279 |
IntAct
13 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| TK2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| MAD2L2 | psi-mi:“MI:0914”(association) | 0.350 | |
| ZDHHC5 | HACD3 | psi-mi:“MI:0914”(association) | 0.350 |
| SHTN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| SLC12A3 | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| VHL | DDT | psi-mi:“MI:0915”(physical association) | 0.000 |
| EIF1B | DDT | psi-mi:“MI:0915”(physical association) | 0.000 |
| IKBKE | DDT | psi-mi:“MI:0915”(physical association) | 0.000 |
| HLA-B | DDT | psi-mi:“MI:0915”(physical association) | 0.000 |
| DSTYK | DDT | psi-mi:“MI:0915”(physical association) | 0.000 |
| DDT | dsbD | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (38): DDT (Affinity Capture-RNA), DDT (Affinity Capture-MS), DDT (Two-hybrid), DDT (Affinity Capture-MS), TRIM24 (Affinity Capture-MS), ARHGDIA (Affinity Capture-MS), MTPN (Affinity Capture-MS), MDH1 (Affinity Capture-MS), TBCA (Affinity Capture-MS), CYCS (Affinity Capture-MS), CSTB (Affinity Capture-MS), RPS28 (Affinity Capture-MS), DDT (Affinity Capture-MS), DDTL (Proximity Label-MS), DDTL (Proximity Label-MS)
ESM2 similar proteins: A0A1X9QHJ0, A4XTM7, A5PK65, B9FFD2, O24210, O32183, O34882, O35215, O44786, O75891, O86237, P12928, P22989, P30046, P30613, P53657, P55434, P80254, P81529, P84172, P90835, P91850, P94502, Q05354, Q0APT7, Q0VFN1, Q18785, Q1GTY6, Q28J83, Q29536, Q2G6R7, Q2IZ07, Q2NAA7, Q2W6A0, Q3MHY6, Q5NQB9, Q5ZMG0, Q640C5, Q68FI3, Q7G764
Diamond homologs: A5PK65, A6NHG4, O35215, O55052, P14174, P30046, P80177, P80254, P80928, P81529, P91850, Q1ZZU7, Q28J83, Q4R549, Q5ZMG0, Q640C5, Q68FI3, Q6DN04, A9JSE7, P30904, P34884, Q02960, Q18785, O44786, P81748, Q76BK2, P90835
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
5 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 4 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
556 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 22:23974308:T:TA | donor_gain | 1.0000 |
| 22:23980304:TCA:T | donor_gain | 1.0000 |
| 22:23980305:CAAAG:C | donor_loss | 1.0000 |
| 22:23980307:AAG:A | donor_loss | 1.0000 |
| 22:23980308:AGGT:A | donor_loss | 1.0000 |
| 22:23980309:GGTG:G | donor_loss | 1.0000 |
| 22:23980310:GT:G | donor_loss | 1.0000 |
| 22:23980311:T:G | donor_loss | 1.0000 |
| 22:23973789:T:TA | donor_gain | 0.9900 |
| 22:23973806:A:AC | donor_gain | 0.9900 |
| 22:23973940:CGCG:C | acceptor_gain | 0.9900 |
| 22:23973942:CG:C | acceptor_gain | 0.9900 |
| 22:23974302:CTTA:C | donor_loss | 0.9900 |
| 22:23974303:TTA:T | donor_loss | 0.9900 |
| 22:23974304:TAC:T | donor_loss | 0.9900 |
| 22:23974305:A:AC | donor_gain | 0.9900 |
| 22:23974305:ACGT:A | donor_gain | 0.9900 |
| 22:23974306:C:CC | donor_gain | 0.9900 |
| 22:23974306:C:CG | donor_loss | 0.9900 |
| 22:23974306:CGT:C | donor_gain | 0.9900 |
| 22:23974306:CGTC:C | donor_gain | 0.9900 |
| 22:23974309:C:A | donor_gain | 0.9900 |
| 22:23980285:C:G | donor_gain | 0.9900 |
| 22:23980306:AAAG:A | donor_gain | 0.9900 |
| 22:23973807:A:C | donor_gain | 0.9800 |
| 22:23973944:C:CC | acceptor_gain | 0.9800 |
| 22:23974305:ACGTC:A | donor_gain | 0.9800 |
| 22:23974306:CG:C | donor_gain | 0.9800 |
| 22:23974306:CGTCC:C | donor_gain | 0.9800 |
| 22:23980263:G:GT | donor_gain | 0.9800 |
AlphaMissense
756 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 22:23971557:A:C | F117L | 0.965 |
| 22:23971557:A:T | F117L | 0.965 |
| 22:23971559:A:G | F117L | 0.965 |
| 22:23973768:C:G | R95P | 0.964 |
| 22:23973818:G:C | S78R | 0.963 |
| 22:23973818:G:T | S78R | 0.963 |
| 22:23973820:T:G | S78R | 0.963 |
| 22:23971608:A:C | F100L | 0.962 |
| 22:23971608:A:T | F100L | 0.962 |
| 22:23971610:A:G | F100L | 0.962 |
| 22:23974388:A:C | N9K | 0.956 |
| 22:23974388:A:T | N9K | 0.956 |
| 22:23971582:C:T | G109D | 0.947 |
| 22:23973867:A:T | I62N | 0.943 |
| 22:23974398:A:T | L6Q | 0.929 |
| 22:23974316:T:A | K33N | 0.928 |
| 22:23974316:T:G | K33N | 0.928 |
| 22:23974410:G:T | P2Q | 0.924 |
| 22:23971621:A:T | I96K | 0.921 |
| 22:23973862:A:G | S64P | 0.921 |
| 22:23973879:G:T | A58E | 0.919 |
| 22:23971609:A:G | F100S | 0.916 |
| 22:23973873:A:C | L60R | 0.916 |
| 22:23973798:A:T | L85H | 0.915 |
| 22:23973873:A:G | L60P | 0.914 |
| 22:23973798:A:C | L85R | 0.912 |
| 22:23973942:C:G | R37P | 0.911 |
| 22:23974347:A:T | L23H | 0.911 |
| 22:23973865:A:G | S63P | 0.910 |
| 22:23974406:G:C | F3L | 0.909 |
dbSNP variants (sampled 300 via entrez): RS1000959418 (22:23982069 C>G), RS1001149768 (22:23971758 C>T), RS1004855495 (22:23980808 G>T), RS1005087550 (22:23972396 C>A,T), RS1005118772 (22:23975444 T>G), RS1006771 (22:23971817 G>T), RS1007882230 (22:23982230 T>G), RS1008893621 (22:23972111 T>A,C), RS1008924555 (22:23972290 T>C), RS1010778120 (22:23971869 G>A,C), RS1012380559 (22:23975792 C>T), RS1012870914 (22:23980857 G>A,C), RS1015920945 (22:23971125 G>A), RS1016950282 (22:23971156 C>A,T), RS1017043746 (22:23970965 C>T)
Disease associations
OMIM: gene MIM:602750 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001277_19 | Liver enzyme levels (gamma-glutamyl transferase) | 2.000000e-09 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004532 | serum gamma-glutamyl transferase measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL5724909 (SINGLE PROTEIN), CHEMBL6066044 (PROTEIN-PROTEIN INTERACTION)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Macrophage migration inhibitory factor (MIF) family proteins
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| compound 10b [PMID: 41766566] | Inhibition | 5.82 | pIC50 |
ChEMBL bioactivities
5 potent at pChembl≥5 of 8 total, top 5 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.30 | IC50 | 500 | nM | CHEMBL5618599 |
| 5.57 | IC50 | 2700 | nM | CHEMBL5619655 |
| 5.51 | IC50 | 3100 | nM | CHEMBL5618860 |
| 5.41 | IC50 | 3900 | nM | CHEMBL5620288 |
| 5.23 | IC50 | 5900 | nM | CHEMBL5618597 |
PubChem BioAssay actives
5 with measured affinity, of 15 total; 5 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 1-[4-[[3-methoxy-5-(trifluoromethyl)phenyl]carbamoyl]phenyl]-N-[(3-methylphenyl)methyl]triazole-4-carboxamide | 2128385: Non-competitive inhibition of DDT (unknown origin) using pyruvic acid as substrate incubated for 10 mins by absorbance based analysis | ic50 | 0.5000 | uM |
| N-[4-chloro-3-(trifluoromethyl)phenyl]-1-(3,4-dimethylphenyl)triazole-4-carboxamide | 2128385: Non-competitive inhibition of DDT (unknown origin) using pyruvic acid as substrate incubated for 10 mins by absorbance based analysis | ic50 | 2.7000 | uM |
| N-[(3-methylphenyl)methyl]-1-[4-[[3-(trifluoromethyl)phenyl]carbamoyl]phenyl]triazole-4-carboxamide | 2128385: Non-competitive inhibition of DDT (unknown origin) using pyruvic acid as substrate incubated for 10 mins by absorbance based analysis | ic50 | 3.1000 | uM |
| N-[(3-methylphenyl)methyl]-1-[3-(trifluoromethyl)phenyl]triazole-4-carboxamide | 2128385: Non-competitive inhibition of DDT (unknown origin) using pyruvic acid as substrate incubated for 10 mins by absorbance based analysis | ic50 | 3.9000 | uM |
| 4-[4-[[[2-[1-[2-[[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]amino]-2-oxoethyl]cyclopentyl]acetyl]amino]methyl]triazol-1-yl]-N-[3-methoxy-5-(trifluoromethyl)phenyl]benzamide | 2128385: Non-competitive inhibition of DDT (unknown origin) using pyruvic acid as substrate incubated for 10 mins by absorbance based analysis | ic50 | 5.9000 | uM |
CTD chemical–gene interactions
40 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases methylation, affects cotreatment, increases expression, affects expression | 4 |
| Smoke | decreases expression, increases abundance | 3 |
| Aflatoxin B1 | affects expression, decreases expression, increases methylation | 3 |
| Air Pollutants | decreases expression, increases abundance | 2 |
| Benzo(a)pyrene | decreases expression | 2 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| bisphenol A | decreases expression | 1 |
| 2,2’-methylenebis(4-methyl-6-tert-butylphenol) | affects expression, affects response to substance | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| 4-aminophenylarsenoxide | affects binding, decreases reaction | 1 |
| diallyl trisulfide | decreases expression | 1 |
| chloropicrin | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| bisphenol B | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Rosiglitazone | decreases expression | 1 |
| Arsenic Trioxide | affects binding, decreases reaction | 1 |
| Acetaminophen | decreases expression | 1 |
| Cannabidiol | decreases expression | 1 |
| Carbamazepine | affects expression | 1 |
| Cisplatin | increases expression | 1 |
| Copper | affects binding | 1 |
| Dichlorodiphenyl Dichloroethylene | increases methylation | 1 |
| Enzyme Inhibitors | increases O-linked glycosylation, decreases activity | 1 |
ChEMBL screening assays
9 unique, capped per target: 9 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5615200 | Binding | Non-competitive inhibition of DDT (unknown origin) using pyruvic acid as substrate incubated for 10 mins by absorbance based analysis | The synthesis of 1,2,3-triazoles as binders of D-dopachrome tautomerase (D-DT) for the development of dual-targeting inhibitors. — Eur J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.