DDX60L
geneOn this page
Also known as FLJ31033
Summary
DDX60L (DExD/H-box 60 like, HGNC:26429) is a protein-coding gene on chromosome 4q32.3, encoding Probable ATP-dependent RNA helicase DDX60-like (Q5H9U9).
This gene encodes a member of the DExD/H-box helicase family of proteins, a subset of the super family 2 helicases. Members of the DExD/H-box helicase family share a conserved functional core comprised of two RecA-like globular domains. These domains contain conserved motifs that mediate ATP binding, ATP hydrolysis, nucleic acid binding, and RNA unwinding. In addition to functions in RNA metabolism, members of this family are involved in anti-viral immunity and act as cytosolic sensors of viral nucleic acids. The protein encoded by this gene has been shown to inhibit hepatitis C virus replication in response to interferon stimulation in cell culture. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 91351 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 307 total
- MANE Select transcript:
NM_001012967
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26429 |
| Approved symbol | DDX60L |
| Name | DExD/H-box 60 like |
| Location | 4q32.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ31033 |
| Ensembl gene | ENSG00000181381 |
| Ensembl biotype | protein_coding |
| OMIM | 616725 |
| Entrez | 91351 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 14 protein_coding, 5 protein_coding_CDS_not_defined, 3 retained_intron
ENST00000503190, ENST00000504793, ENST00000505150, ENST00000505696, ENST00000505863, ENST00000505890, ENST00000510590, ENST00000511577, ENST00000512371, ENST00000512958, ENST00000513103, ENST00000513901, ENST00000514580, ENST00000514748, ENST00000515088, ENST00000682922, ENST00000854594, ENST00000854595, ENST00000854596, ENST00000929732, ENST00000943507, ENST00000943508
RefSeq mRNA: 7 — MANE Select: NM_001012967
NM_001012967, NM_001291510, NM_001345927, NM_001378069, NM_001378070, NM_001378071, NM_001378072
CCDS: CCDS47161
Canonical transcript exons
ENST00000682922 — 38 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001015931 | 168423608 | 168423774 |
| ENSE00001015935 | 168422524 | 168422670 |
| ENSE00001015942 | 168433010 | 168433115 |
| ENSE00001015944 | 168427070 | 168427322 |
| ENSE00001015948 | 168430478 | 168430638 |
| ENSE00001015949 | 168432455 | 168432570 |
| ENSE00001081478 | 168415657 | 168415799 |
| ENSE00001081479 | 168403982 | 168404106 |
| ENSE00001081483 | 168415408 | 168415517 |
| ENSE00001081488 | 168405950 | 168406078 |
| ENSE00001304567 | 168441337 | 168441492 |
| ENSE00001479807 | 168448638 | 168448779 |
| ENSE00001479809 | 168453124 | 168453282 |
| ENSE00001479812 | 168456039 | 168456152 |
| ENSE00001479814 | 168457892 | 168458008 |
| ENSE00001479817 | 168461699 | 168462040 |
| ENSE00001694037 | 168395959 | 168396124 |
| ENSE00002441250 | 168379726 | 168379830 |
| ENSE00002479661 | 168419302 | 168419397 |
| ENSE00002486402 | 168384612 | 168384812 |
| ENSE00002498664 | 168406602 | 168406706 |
| ENSE00003463582 | 168361149 | 168361211 |
| ENSE00003479266 | 168471747 | 168471936 |
| ENSE00003523208 | 168378354 | 168378475 |
| ENSE00003537591 | 168375377 | 168375524 |
| ENSE00003541025 | 168416682 | 168416797 |
| ENSE00003545481 | 168421760 | 168421909 |
| ENSE00003563302 | 168379363 | 168379504 |
| ENSE00003578112 | 168472696 | 168472809 |
| ENSE00003585627 | 168356735 | 168358276 |
| ENSE00003591051 | 168400826 | 168400978 |
| ENSE00003594327 | 168472455 | 168472524 |
| ENSE00003603500 | 168373666 | 168373808 |
| ENSE00003608168 | 168420261 | 168420380 |
| ENSE00003689338 | 168371612 | 168371763 |
| ENSE00003916354 | 168391540 | 168391644 |
| ENSE00003917895 | 168394465 | 168394617 |
| ENSE00003920369 | 168480377 | 168480492 |
Expression profiles
Bgee: expression breadth ubiquitous, 229 present calls, max score 94.77.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 28.6555 / max 2415.4008, expressed in 1571 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 54775 | 28.5383 | 1558 |
| 54785 | 0.0607 | 24 |
| 54761 | 0.0565 | 29 |
Top tissues by expression
241 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| monocyte | CL:0000576 | 94.77 | gold quality |
| leukocyte | CL:0000738 | 94.51 | gold quality |
| jejunal mucosa | UBERON:0000399 | 93.99 | gold quality |
| blood | UBERON:0000178 | 93.95 | gold quality |
| visceral pleura | UBERON:0002401 | 92.27 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 91.60 | gold quality |
| granulocyte | CL:0000094 | 91.26 | gold quality |
| vermiform appendix | UBERON:0001154 | 89.40 | gold quality |
| parietal pleura | UBERON:0002400 | 89.13 | gold quality |
| placenta | UBERON:0001987 | 89.02 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 88.43 | gold quality |
| bone marrow cell | CL:0002092 | 88.42 | gold quality |
| spleen | UBERON:0002106 | 88.26 | gold quality |
| decidua | UBERON:0002450 | 88.13 | gold quality |
| calcaneal tendon | UBERON:0003701 | 87.85 | gold quality |
| colonic mucosa | UBERON:0000317 | 87.76 | gold quality |
| bone marrow | UBERON:0002371 | 87.75 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 87.49 | silver quality |
| mucosa of sigmoid colon | UBERON:0004993 | 87.40 | gold quality |
| right lung | UBERON:0002167 | 87.34 | gold quality |
| duodenum | UBERON:0002114 | 86.65 | gold quality |
| sperm | CL:0000019 | 86.53 | gold quality |
| thymus | UBERON:0002370 | 85.95 | gold quality |
| tendon | UBERON:0000043 | 85.68 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.50 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 85.25 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 85.20 | gold quality |
| rectum | UBERON:0001052 | 85.19 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 85.04 | gold quality |
| endometrium | UBERON:0001295 | 84.98 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-7037 | yes | 1182.92 |
| E-MTAB-7052 | yes | 849.13 |
| E-ANND-3 | yes | 10.06 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NR1I2
miRNA regulators (miRDB)
58 targeting DDX60L, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4682 | 100.00 | 68.89 | 1258 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-6857-5P | 99.87 | 65.32 | 985 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
| HSA-MIR-664B-3P | 99.84 | 71.65 | 3590 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
| HSA-MIR-320A-3P | 99.77 | 69.73 | 2107 |
| HSA-MIR-320B | 99.77 | 69.73 | 2107 |
| HSA-MIR-320C | 99.77 | 69.73 | 2107 |
| HSA-MIR-320D | 99.77 | 69.73 | 2107 |
| HSA-MIR-4429 | 99.77 | 69.62 | 2111 |
| HSA-MIR-6885-3P | 99.75 | 70.36 | 3187 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-4527 | 99.66 | 67.43 | 714 |
| HSA-MIR-587 | 99.64 | 70.86 | 2611 |
| HSA-MIR-6503-5P | 99.62 | 66.96 | 597 |
| HSA-MIR-497-3P | 99.61 | 69.71 | 1990 |
| HSA-MIR-216A-5P | 99.50 | 68.02 | 1288 |
| HSA-MIR-365A-3P | 99.43 | 70.02 | 836 |
Literature-anchored findings (GeneRIF, showing 2)
- DDX60L is an interferon-gamma stimulated gene product restricting Hepatitis C virus replication in cell culture. (PMID:26269178)
- Identification and functional analysis of novel oncogene DDX60L in pancreatic ductal adenocarcinoma. (PMID:34789165)
Cross-species orthologs
1 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| caenorhabditis_elegans | WBGENE00012896 |
Paralogs (8): MTREX (ENSG00000039123), POLQ (ENSG00000051341), ASCC3 (ENSG00000112249), DDX60 (ENSG00000137628), SNRNP200 (ENSG00000144028), HFM1 (ENSG00000162669), HELQ (ENSG00000163312), SKIC2 (ENSG00000204351)
Protein
Protein identifiers
Probable ATP-dependent RNA helicase DDX60-like — Q5H9U9 (reviewed: Q5H9U9)
Alternative names: DEAD box protein 60-like
All UniProt accessions (6): D6RB62, D6RBA2, D6RIU1, Q5H9U9, H0Y8H0, H0Y939
UniProt curated annotations — full annotation on UniProt →
Similarity. Belongs to the helicase family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q5H9U9-1 | 1 | yes |
| Q5H9U9-2 | 2 |
RefSeq proteins (7): NP_001012985, NP_001278439, NP_001332856, NP_001364998, NP_001364999, NP_001365000, NP_001365001 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001650 | Helicase_C-like | Domain |
| IPR011545 | DEAD/DEAH_box_helicase_dom | Domain |
| IPR014001 | Helicase_ATP-bd | Domain |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR052431 | SKI2_subfamily_helicases | Family |
| IPR055124 | PIN-like_DDX60 | Domain |
| IPR059032 | WHD_DDX60 | Domain |
Pfam: PF00270, PF00271, PF23002, PF26076, PF26167
Catalyzed reactions (Rhea), 1 shown:
- ATP + H2O = ADP + phosphate + H(+) (RHEA:13065)
UniProt features (23 total): sequence conflict 7, sequence variant 5, splice variant 3, domain 2, compositionally biased region 2, chain 1, region of interest 1, short sequence motif 1, binding site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q5H9U9-F1 | 79.77 | 0.28 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (1): 765–772
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 125 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_UP, GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_UP, chr4q32, TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_10D_UP, DOUGLAS_BMI1_TARGETS_DN, GOBP_DEFENSE_RESPONSE_TO_VIRUS, DODD_NASOPHARYNGEAL_CARCINOMA_UP, GOBP_RESPONSE_TO_VIRUS, GOMF_SINGLE_STRANDED_RNA_BINDING, GOMF_HYDROLASE_ACTIVITY_ACTING_ON_ACID_ANHYDRIDES, GOMF_ATP_HYDROLYSIS_ACTIVITY, GOMF_ADENYL_NUCLEOTIDE_BINDING, GOMF_ISOMERASE_ACTIVITY, ZWANG_TRANSIENTLY_UP_BY_2ND_EGF_PULSE_ONLY, CSR_LATE_UP.V1_DN
GO Biological Process (1): defense response to virus (GO:0051607)
GO Molecular Function (10): RNA helicase activity (GO:0003724), double-stranded RNA binding (GO:0003725), single-stranded RNA binding (GO:0003727), ATP binding (GO:0005524), ATP hydrolysis activity (GO:0016887), nucleotide binding (GO:0000166), nucleic acid binding (GO:0003676), RNA binding (GO:0003723), helicase activity (GO:0004386), hydrolase activity (GO:0016787)
GO Cellular Component (1): cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| RNA binding | 2 |
| ATP-dependent activity | 2 |
| defense response | 1 |
| response to virus | 1 |
| helicase activity | 1 |
| ATP-dependent activity, acting on RNA | 1 |
| catalytic activity, acting on RNA | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
| nucleic acid binding | 1 |
| nucleic acid conformation isomerase activity | 1 |
| catalytic activity, acting on a nucleic acid | 1 |
| catalytic activity | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1544 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DDX60L | DDX49 | Q9Y6V7 | 363 |
| DDX60L | DDX50 | Q9BQ39 | 344 |
| DDX60L | IGHMBP2 | P38935 | 337 |
| DDX60L | RIGI | O95786 | 334 |
| DDX60L | ZNF514 | Q96K75 | 320 |
| DDX60L | FBH1 | Q8NFZ0 | 319 |
| DDX60L | RUVBL2 | Q9Y230 | 316 |
| DDX60L | C4orf33 | Q8N1A6 | 310 |
| DDX60L | IFIT3 | O14879 | 309 |
| DDX60L | DQX1 | Q8TE96 | 305 |
| DDX60L | TTI1 | O43156 | 304 |
| DDX60L | IFI6 | P09912 | 301 |
| DDX60L | TMEM200C | A6NKL6 | 298 |
| DDX60L | TNPO2 | O14787 | 296 |
| DDX60L | DDX20 | Q9UHI6 | 295 |
IntAct
21 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EIF3I | EIF3F | psi-mi:“MI:0914”(association) | 0.640 |
| PTGES3 | AIP | psi-mi:“MI:0914”(association) | 0.530 |
| HDGFL2 | CDC7 | psi-mi:“MI:0914”(association) | 0.530 |
| DDX60L | ATP5F1B | psi-mi:“MI:0915”(physical association) | 0.400 |
| DDX60L | H2BC21 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Vamp2 | RTL8C | psi-mi:“MI:0914”(association) | 0.350 |
| ZSCAN26 | TDG | psi-mi:“MI:0914”(association) | 0.350 |
| BMI1 | MEIS3P1 | psi-mi:“MI:0914”(association) | 0.350 |
| ZCCHC10 | C1orf226 | psi-mi:“MI:0914”(association) | 0.350 |
| C1orf174 | POLRMT | psi-mi:“MI:0914”(association) | 0.350 |
| CAVIN1 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.350 |
| HMGA1 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.350 |
| IFNA14 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.350 |
| MORF4L2 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.350 |
| NPM3 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.350 |
| RPS19 | ZNF316 | psi-mi:“MI:0914”(association) | 0.350 |
| RPS8 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.350 |
| RRP8 | POLRMT | psi-mi:“MI:0914”(association) | 0.350 |
| THAP11 | XPC | psi-mi:“MI:0914”(association) | 0.350 |
| ZCCHC10 | ARHGAP10 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (32): DDX60L (Co-fractionation), DDX60L (Affinity Capture-MS), DDX60L (Affinity Capture-MS), DDX60L (Affinity Capture-MS), DDX60L (Affinity Capture-MS), DDX60L (Affinity Capture-MS), DDX60L (Affinity Capture-MS), DDX60L (Affinity Capture-MS), DDX60L (Affinity Capture-MS), DDX60L (Proximity Label-MS), DDX60L (Proximity Label-MS), DDX60L (Proximity Label-MS), DDX60L (Proximity Label-MS), DDX60L (Affinity Capture-MS), DDX60L (Affinity Capture-MS)
ESM2 similar proteins: A0A1B0GW35, A6QNM3, B0R034, B1ANS9, B9EK06, D2KC46, D3ZY60, F1MS15, F1P065, F1REV3, O00522, O15091, O75747, P10911, P58069, Q008S8, Q14449, Q14D04, Q15283, Q32NR9, Q45GW3, Q4R366, Q4R6T7, Q5H9U9, Q5K651, Q5PQS3, Q5XGX5, Q5XIZ9, Q5ZLD2, Q60862, Q63713, Q69Z37, Q6DCF6, Q6S5J6, Q6TNJ1, Q75PQ8, Q80W71, Q86VD1, Q86YR7, Q8C5W4
Diamond homologs: A0FLQ6, O08307, O34996, O51498, O52225, O75417, P19821, P30313, P35207, P46835, P52027, P52028, P56105, P74933, P80194, Q09475, Q54XN7, Q5H9U9, Q8CGS6, Q8IY21, Q9P7T8, Q9RAA9, Q9S1G2, Q9V0A9, A2PYH4, A2RUV5, A8MB76, B0R7Q2, B6DMK2, D3Z4R1, E1BNG3, E7F8F4, E9PZJ8, F1LNJ2, F1LPQ2, F1NTD6, F4JAA5, O48534, O59025, O60072
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
307 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 234 |
| Likely benign | 23 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
6684 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:168371610:AC:A | donor_gain | 1.0000 |
| 4:168371611:CC:C | donor_gain | 1.0000 |
| 4:168373711:C:CT | acceptor_gain | 1.0000 |
| 4:168375375:A:AC | donor_gain | 1.0000 |
| 4:168375376:C:CA | donor_gain | 1.0000 |
| 4:168375376:CTG:C | donor_gain | 1.0000 |
| 4:168375376:CTGA:C | donor_gain | 1.0000 |
| 4:168375522:CAC:C | acceptor_gain | 1.0000 |
| 4:168375523:ACCT:A | acceptor_loss | 1.0000 |
| 4:168375524:CCTA:C | acceptor_loss | 1.0000 |
| 4:168375525:C:CG | acceptor_loss | 1.0000 |
| 4:168375526:T:A | acceptor_loss | 1.0000 |
| 4:168378374:A:C | donor_gain | 1.0000 |
| 4:168390445:T:TA | donor_gain | 1.0000 |
| 4:168391539:CCTGT:C | donor_gain | 1.0000 |
| 4:168394463:AC:A | donor_gain | 1.0000 |
| 4:168394464:CC:C | donor_gain | 1.0000 |
| 4:168394618:C:CC | acceptor_gain | 1.0000 |
| 4:168395954:CGTA:C | donor_gain | 1.0000 |
| 4:168395957:A:AC | donor_gain | 1.0000 |
| 4:168395958:C:CC | donor_gain | 1.0000 |
| 4:168400980:T:C | acceptor_gain | 1.0000 |
| 4:168403977:CTT:C | donor_loss | 1.0000 |
| 4:168403978:TTA:T | donor_loss | 1.0000 |
| 4:168403980:A:AC | donor_gain | 1.0000 |
| 4:168403980:ACA:A | donor_loss | 1.0000 |
| 4:168403981:C:CT | donor_gain | 1.0000 |
| 4:168403981:CA:C | donor_gain | 1.0000 |
| 4:168403981:CAA:C | donor_gain | 1.0000 |
| 4:168403981:CAAA:C | donor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000094871 (4:168432086 T>C,G), RS1000108977 (4:168419628 A>G), RS1000115492 (4:168388006 A>C,G), RS1000124713 (4:168467861 G>A), RS1000181450 (4:168386694 A>T), RS10002007 (4:168478409 C>G,T), RS1000208015 (4:168438114 C>G), RS10002308 (4:168478672 C>A), RS1000245544 (4:168369282 T>C), RS1000252889 (4:168396222 G>A,T), RS1000267930 (4:168473864 T>C), RS10002730 (4:168399370 A>G,T), RS1000297208 (4:168450210 T>TA), RS1000303192 (4:168480043 C>T), RS1000333954 (4:168480384 G>A)
Disease associations
OMIM: gene MIM:616725 | disease phenotypes:
GenCC curated gene-disease
Mondo (2): prostate cancer (MONDO:0008315), breast ductal adenocarcinoma (MONDO:0005590)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000767_2 | Non-alcoholic fatty liver disease histology (AST) | 6.000000e-07 |
| GCST001762_300 | Obesity-related traits | 8.000000e-06 |
| GCST005024_11 | Pursuit maintenance gain | 2.000000e-06 |
| GCST008156_105 | Hip circumference adjusted for BMI | 2.000000e-06 |
| GCST009391_501 | Metabolite levels | 1.000000e-06 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0003939 | energy intake |
| EFO:0008433 | pursuit maintenance gain measurement |
| EFO:0008039 | BMI-adjusted hip circumference |
| EFO:0010525 | propionic acid measurement |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018270 | Carcinoma, Ductal, Breast | C04.557.470.200.025.232.500; C04.557.470.615.132.500; C04.588.180.390; C17.800.090.500.390 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
30 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects cotreatment, increases abundance, increases expression | 2 |
| Tobacco Smoke Pollution | decreases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol A | decreases methylation | 1 |
| beta-lapachone | increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| entinostat | increases expression | 1 |
| ICG 001 | decreases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| 2,3,5-trichloro-6-phenyl-(1,4)benzoquinone | increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants, Occupational | decreases expression | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Benzo(a)pyrene | decreases expression | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Estradiol | increases expression | 1 |
| Nickel | decreases expression | 1 |
| Ribonucleotides | affects binding | 1 |
| Silicon Dioxide | increases expression | 1 |
| Sodium Dodecyl Sulfate | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Valproic Acid | decreases methylation | 1 |
| Zidovudine | affects cotreatment, increases expression | 1 |
| Okadaic Acid | increases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2MK | Abcam A-549 DDX60L KO | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cirrhosis of liver, metabolic dysfunction-associated steatotic liver disease