DEFA1B
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Summary
DEFA1B (defensin alpha 1B, HGNC:33596) is a protein-coding gene on chromosome 8p23.1, encoding Neutrophil defensin 1 (P59665). Effector molecule of the innate immune system that acts via antibiotic-like properties against a broad array of infectious agents including bacteria, fungi, and viruses or by promoting the activation and maturation of some APCs.
Defensins are a family of antimicrobial and cytotoxic peptides thought to be involved in host defense. They are abundant in the granules of neutrophils and also found in the epithelia of mucosal surfaces such as those of the intestine, respiratory tract, urinary tract, and vagina. Members of the defensin family are highly similar in protein sequence and distinguished by a conserved cysteine motif. The protein encoded by this gene, defensin, alpha 1, is found in the microbicidal granules of neutrophils and likely plays a role in phagocyte-mediated host defense. Several alpha defensin genes are clustered on chromosome 8. This gene differs from defensin, alpha 3 by only one amino acid. This gene and the gene encoding defensin, alpha 3 are both subject to copy number variation. Two transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 728358 — RefSeq curated summary.
At a glance
- GWAS associations: 8
- Druggable target: yes
- MANE Select transcript:
NM_001042500
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:33596 |
| Approved symbol | DEFA1B |
| Name | defensin alpha 1B |
| Location | 8p23.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000240247 |
| Ensembl biotype | protein_coding |
| Entrez | 728358 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 4 protein_coding
ENST00000382689, ENST00000881278, ENST00000958684, ENST00000958685
RefSeq mRNA: 2 — MANE Select: NM_001042500
NM_001042500, NM_001302265
CCDS: CCDS43691
Canonical transcript exons
ENST00000382689 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001308473 | 6999123 | 6999198 |
| ENSE00001594132 | 6996766 | 6996996 |
| ENSE00001719543 | 6997577 | 6997763 |
Expression profiles
Bgee: expression breadth ubiquitous, 107 present calls, max score 99.53.
Top tissues by expression
131 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| monocyte | CL:0000576 | 99.53 | gold quality |
| granulocyte | CL:0000094 | 97.73 | gold quality |
| right lung | UBERON:0002167 | 97.33 | gold quality |
| spleen | UBERON:0002106 | 96.28 | gold quality |
| leukocyte | CL:0000738 | 95.74 | gold quality |
| bone marrow | UBERON:0002371 | 93.21 | gold quality |
| blood | UBERON:0000178 | 88.39 | gold quality |
| bone marrow cell | CL:0002092 | 86.71 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 80.30 | gold quality |
| placenta | UBERON:0001987 | 74.37 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 74.25 | gold quality |
| right lobe of liver | UBERON:0001114 | 69.08 | gold quality |
| lung | UBERON:0002048 | 66.03 | gold quality |
| left uterine tube | UBERON:0001303 | 54.42 | gold quality |
| liver | UBERON:0002107 | 52.93 | gold quality |
| omental fat pad | UBERON:0010414 | 51.53 | gold quality |
| adenohypophysis | UBERON:0002196 | 50.94 | gold quality |
| adipose tissue | UBERON:0001013 | 46.42 | gold quality |
| heart left ventricle | UBERON:0002084 | 43.46 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 43.09 | gold quality |
| putamen | UBERON:0001874 | 42.92 | gold quality |
| right frontal lobe | UBERON:0002810 | 42.78 | gold quality |
| right atrium auricular region | UBERON:0006631 | 42.52 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 42.49 | gold quality |
| lymph node | UBERON:0000029 | 42.29 | gold quality |
| thyroid gland | UBERON:0002046 | 42.28 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 42.20 | gold quality |
| heart | UBERON:0000948 | 41.15 | gold quality |
| gastrocnemius | UBERON:0001388 | 39.90 | gold quality |
| pituitary gland | UBERON:0000007 | 39.47 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-126 | yes | 4037.46 |
| E-ANND-3 | no | 0.38 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
11 targeting DEFA1B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-12124 | 99.68 | 69.17 | 2700 |
| HSA-MIR-6513-5P | 99.43 | 67.81 | 1071 |
| HSA-MIR-330-3P | 99.41 | 69.95 | 2521 |
| HSA-MIR-5187-5P | 98.54 | 67.94 | 952 |
| HSA-MIR-4468 | 98.01 | 66.85 | 1187 |
| HSA-MIR-3670 | 97.88 | 64.39 | 763 |
| HSA-MIR-6728-5P | 97.79 | 66.33 | 891 |
| HSA-MIR-4433A-3P | 97.75 | 62.82 | 1435 |
Literature-anchored findings (GeneRIF, showing 6)
- Data show that H. pylori induces alpha-defensin release from granulocytes, which may be important in local host response to H. pylori infection in gastroduodenal diseases. (PMID:19169650)
- binding of HNP1 to affected bacterial toxins caused their local unfolding, potentiated their thermal melting and precipitation, exposed new regions for proteolysis, and increased susceptibility to collisional quenchers. (PMID:25517613)
- Inflammatory regulation of defensin alpha 1 (human neutrophil peptide 1; HNP-1) in pancreatic ductal adenocarcinoma (PDAC) tissue and cells indicates that HNP-1 may be a link between chronic inflammation and malignant transformation in the pancreas. (PMID:29683978)
- Human Neutrophil Peptide 1 directly binds and neutralizes Exotoxin A of Pseudomonas aeruginosa. (PMID:29738776)
- DEFA1B encodes an antibacterial peptide that is bacteriocidal against S. aureus, E. coli, and P. aeruginosa. (PMID:2997278)
- our findings suggest that DEFA1B and NLRP3 gene expression levels can be used as valuable biologic markers for estimation of disease activity in NBD and as potential targets for future therapeutic trials for inflammatory disorders. (PMID:31471397)
Cross-species orthologs
40 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Defa39 | ENSMUSG00000058618 |
| mus_musculus | Defa26 | ENSMUSG00000060070 |
| mus_musculus | Defa17 | ENSMUSG00000060208 |
| mus_musculus | Defa35 | ENSMUSG00000061845 |
| mus_musculus | Defa38 | ENSMUSG00000061958 |
| mus_musculus | Defa34 | ENSMUSG00000063206 |
| mus_musculus | Defa24 | ENSMUSG00000064213 |
| mus_musculus | Defa37 | ENSMUSG00000065956 |
| mus_musculus | Defa28 | ENSMUSG00000074434 |
| mus_musculus | Defa29 | ENSMUSG00000074437 |
| mus_musculus | Defa5 | ENSMUSG00000074439 |
| mus_musculus | Defa3 | ENSMUSG00000074440 |
| mus_musculus | Defa40 | ENSMUSG00000074441 |
| mus_musculus | Defa31 | ENSMUSG00000074442 |
| mus_musculus | Defa22 | ENSMUSG00000074443 |
| mus_musculus | Defa30 | ENSMUSG00000074444 |
| mus_musculus | Defa23 | ENSMUSG00000074446 |
| mus_musculus | Defa21 | ENSMUSG00000074447 |
| mus_musculus | Defa43 | ENSMUSG00000079113 |
| mus_musculus | Defa42 | ENSMUSG00000079114 |
| mus_musculus | Defa41 | ENSMUSG00000079116 |
| mus_musculus | AY761185 | ENSMUSG00000079120 |
| mus_musculus | Defa33 | ENSMUSG00000094362 |
| mus_musculus | Defa36 | ENSMUSG00000094662 |
| mus_musculus | Defa25 | ENSMUSG00000094687 |
| mus_musculus | Defa32 | ENSMUSG00000094818 |
| mus_musculus | Defa20 | ENSMUSG00000095066 |
| mus_musculus | Defa2 | ENSMUSG00000096295 |
| rattus_norvegicus | Np4 | ENSRNOG00000028707 |
| rattus_norvegicus | Defal1 | ENSRNOG00000029462 |
| rattus_norvegicus | Defa5 | ENSRNOG00000030093 |
| rattus_norvegicus | Defa24 | ENSRNOG00000030524 |
| rattus_norvegicus | Defa3 | ENSRNOG00000038133 |
| rattus_norvegicus | RatNP-3b | ENSRNOG00000038135 |
| rattus_norvegicus | Defa31 | ENSRNOG00000061751 |
| rattus_norvegicus | Defa9 | ENSRNOG00000068468 |
| rattus_norvegicus | Np4 | ENSRNOG00000069755 |
| rattus_norvegicus | ENSRNOG00000078458 | |
| rattus_norvegicus | Defa8 | ENSRNOG00000081022 |
| rattus_norvegicus | Defa9 | ENSRNOG00000091367 |
Paralogs (5): DEFA5 (ENSG00000164816), DEFA4 (ENSG00000164821), DEFA6 (ENSG00000164822), DEFA1 (ENSG00000206047), DEFA3 (ENSG00000239839)
Protein
Protein identifiers
Neutrophil defensin 1 — P59665 (reviewed: P59665)
Alternative names: Defensin, alpha 1, HNP-1
All UniProt accessions (1): P59665
UniProt curated annotations — full annotation on UniProt →
Function. Effector molecule of the innate immune system that acts via antibiotic-like properties against a broad array of infectious agents including bacteria, fungi, and viruses or by promoting the activation and maturation of some APCs. Interacts with the essential precursor of cell wall synthesis lipid II to inhibit bacterial cell wall synthesis. Inhibits adenovirus infection via inhibition of viral disassembly at the vertex region, thereby restricting the release of internal capsid protein pVI, which is required for endosomal membrane penetration during cell entry. In addition, interaction with adenovirus capsid leads to the redirection of viral particles to TLR4 thereby promoting a NLRP3-mediated inflammasome response and interleukin 1-beta (IL-1beta) release. Induces the production of proinflammatory cytokines including type I interferon (IFN) in plasmacytoid dendritic cells (pDCs) by triggering the degradation of NFKBIA and nuclear translocation of IRF1, both of which are required for activation of pDCs.
Subunit / interactions. Tetramer. Dimer. Interacts with RETN. (Microbial infection) Interacts with HIV-1 surface protein gp120. (Microbial infection) Interacts with herpes virus 1 (HHV1) envelope glycoprotein B; this interaction inhibits viral infection.
Subcellular location. Secreted.
Post-translational modifications. ADP-ribosylation drastically reduces cytotoxic and antibacterial activities, and enhances IL8 production. Phosphorylation at Tyr-85 has been found in some cancer cell lines, and interferes with ADP-ribosylation.
Similarity. Belongs to the alpha-defensin family.
RefSeq proteins (2): NP_001035965, NP_001289194 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002366 | Alpha-defensin_N | Domain |
| IPR006080 | Beta/alpha-defensin_C | Domain |
| IPR006081 | Alpha-defensin_C | Domain |
| IPR016327 | Alpha-defensin | Family |
Pfam: PF00323, PF00879
UniProt features (15 total): disulfide bond 3, strand 3, modified residue 3, peptide 2, signal peptide 1, propeptide 1, mutagenesis site 1, chain 1
Structure
Experimental structures (PDB)
19 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9FQB | X-RAY DIFFRACTION | 1.09 |
| 3HJ2 | X-RAY DIFFRACTION | 1.4 |
| 3GNY | X-RAY DIFFRACTION | 1.56 |
| 3LO2 | X-RAY DIFFRACTION | 1.56 |
| 3LO6 | X-RAY DIFFRACTION | 1.56 |
| 3LO9 | X-RAY DIFFRACTION | 1.56 |
| 3LOE | X-RAY DIFFRACTION | 1.56 |
| 2PM1 | X-RAY DIFFRACTION | 1.6 |
| 3LO1 | X-RAY DIFFRACTION | 1.6 |
| 3H6C | X-RAY DIFFRACTION | 1.63 |
| 3LVX | X-RAY DIFFRACTION | 1.63 |
| 3HJD | X-RAY DIFFRACTION | 1.65 |
| 4LBF | X-RAY DIFFRACTION | 1.7 |
| 4LBB | X-RAY DIFFRACTION | 1.72 |
| 3LO4 | X-RAY DIFFRACTION | 1.75 |
| 4DU0 | X-RAY DIFFRACTION | 1.9 |
| 4LB7 | X-RAY DIFFRACTION | 1.9 |
| 4LB1 | X-RAY DIFFRACTION | 2 |
| 2KHT | SOLID-STATE NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P59665-F1 | 73.61 | 0.23 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 78, 85, 88
Disulfide bonds (3): 73–93, 66–94, 68–83
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 90 | almost complete loss of bactericidal activity. |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-1461973 | Defensins |
| R-HSA-1462054 | Alpha-defensins |
| R-HSA-6798695 | Neutrophil degranulation |
MSigDB gene sets: 76 (showing top):
REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_ANTIMICROBIAL_HUMORAL_RESPONSE, GOBP_CELL_CHEMOTAXIS, GOBP_CELLULAR_RESPONSE_TO_LIPID, GOCC_SECRETORY_GRANULE, GOBP_ORGAN_OR_TISSUE_SPECIFIC_IMMUNE_RESPONSE, GOBP_LEUKOCYTE_CHEMOTAXIS, GOBP_TAXIS, GOBP_LEUKOCYTE_MIGRATION, GOBP_HORMONE_MEDIATED_SIGNALING_PATHWAY, GOBP_DEFENSE_RESPONSE_TO_OTHER_ORGANISM, GOBP_CELLULAR_RESPONSE_TO_HORMONE_STIMULUS, GOBP_INNATE_IMMUNE_RESPONSE_IN_MUCOSA, GOBP_RESPONSE_TO_PROTOZOAN, GOBP_HUMORAL_IMMUNE_RESPONSE
GO Biological Process (18): innate immune response in mucosa (GO:0002227), chemotaxis (GO:0006935), immune response (GO:0006955), T cell chemotaxis (GO:0010818), antibacterial humoral response (GO:0019731), estrogen receptor signaling pathway (GO:0030520), killing of cells of another organism (GO:0031640), defense response to protozoan (GO:0042832), innate immune response (GO:0045087), defense response to Gram-negative bacterium (GO:0050829), defense response to Gram-positive bacterium (GO:0050830), defense response to fungus (GO:0050832), defense response to virus (GO:0051607), disruption of plasma membrane integrity in another organism (GO:0051673), obsolete killing by host of symbiont cells (GO:0051873), antimicrobial humoral immune response mediated by antimicrobial peptide (GO:0061844), defense response (GO:0006952), defense response to bacterium (GO:0042742)
GO Molecular Function (2): pore-forming activity (GO:0140911), protein binding (GO:0005515)
GO Cellular Component (5): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), Golgi lumen (GO:0005796), azurophil granule lumen (GO:0035578), extracellular exosome (GO:0070062)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Antimicrobial peptides | 1 |
| Defensins | 1 |
| Innate Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| defense response to bacterium | 3 |
| defense response | 3 |
| antimicrobial humoral response | 2 |
| mucosal immune response | 1 |
| innate immune response | 1 |
| response to chemical | 1 |
| taxis | 1 |
| immune system process | 1 |
| response to stimulus | 1 |
| lymphocyte chemotaxis | 1 |
| T cell migration | 1 |
| nuclear receptor-mediated steroid hormone signaling pathway | 1 |
| cell killing | 1 |
| disruption of cell in another organism | 1 |
| response to protozoan | 1 |
| defense response to other organism | 1 |
| immune response | 1 |
| defense response to symbiont | 1 |
| response to fungus | 1 |
| response to virus | 1 |
| disruption of cellular anatomical structure in another organism | 1 |
| response to stress | 1 |
| response to bacterium | 1 |
| molecular_function | 1 |
| binding | 1 |
| cellular anatomical structure | 1 |
| Golgi apparatus | 1 |
| intracellular organelle lumen | 1 |
| vacuolar lumen | 1 |
| secretory granule lumen | 1 |
| azurophil granule | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
28 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SNW1 | AQR | psi-mi:“MI:0914”(association) | 0.650 |
| DEFA1 | UBQLN2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DEFA1 | MANBA | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO4 | AMD1 | psi-mi:“MI:0914”(association) | 0.530 |
| Dynll1 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| LECT2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| ZNF16 | DEFA1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| DEFA1 | GSK3B | psi-mi:“MI:0915”(physical association) | 0.370 |
| PLB1 | WDR47 | psi-mi:“MI:0914”(association) | 0.350 |
| rep | psi-mi:“MI:0914”(association) | 0.350 | |
| IRAK2 | LTF | psi-mi:“MI:0914”(association) | 0.350 |
| ROCK2 | CLTB | psi-mi:“MI:0914”(association) | 0.350 |
| TEX14 | DNAJB6 | psi-mi:“MI:0914”(association) | 0.350 |
| SRPK1 | SNRPGP15 | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | psi-mi:“MI:0914”(association) | 0.350 | |
| PPP2R2B | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| ERO1A | LTF | psi-mi:“MI:0914”(association) | 0.350 |
| CCR1 | UBA6 | psi-mi:“MI:0914”(association) | 0.350 |
| KLK10 | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| ITGA5 | ORC4 | psi-mi:“MI:0914”(association) | 0.350 |
| P/V/C | KPNA3 | psi-mi:“MI:0914”(association) | 0.350 |
| MYB | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| DEFA1 | UBQLN2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| PFDN1 | DEFA1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (173): DEFA1 (Affinity Capture-MS), DEFA1B (Affinity Capture-MS), IGFBP2 (Affinity Capture-MS), PPP3CC (Affinity Capture-MS), DAK (Affinity Capture-MS), CTBS (Affinity Capture-MS), PPP3R1 (Affinity Capture-MS), LIFR (Affinity Capture-MS), SUSD1 (Affinity Capture-MS), CTSF (Affinity Capture-MS), PPP3CA (Affinity Capture-MS), ARSB (Affinity Capture-MS), FBLN1 (Affinity Capture-MS), PXDN (Affinity Capture-MS), TMEM2 (Affinity Capture-MS)
ESM2 similar proteins: A0A2I6EDM5, A0A3G3C7S6, A1Z0M0, A6YB85, B2KJ30, D2Y2M4, D2Y2N3, D6C4K9, D6C4L2, P0CB11, P0DUJ6, P18512, P18513, P28312, P50705, P50708, P50714, P56714, P59665, P59666, P60030, P60031, P60032, P61516, P69751, P69754, P82106, P82951, Q01524, Q3L180, Q4JEI2, Q5G860, Q5G863, Q5G864, Q7T273, Q801Y3, Q80T19, Q99MH3, Q9BP89, Q9BP99
Diamond homologs: A6YB85, B6ULW4, B6ULW5, B6ULW7, P01376, P01377, P07466, P07467, P07469, P0C8A2, P11477, P11478, P12838, P28309, P28310, P28311, P28312, P49112, P50704, P50705, P50707, P50708, P50709, P50711, P50712, P50713, P50714, P59665, P59666, P60030, P60031, P60032, P81465, P81467, P82270, P82271, P82319, P82320, Q01523, Q01524
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
0 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 0 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
296 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:6997571:TCTCA:T | donor_loss | 1.0000 |
| 8:6997572:CTCA:C | donor_loss | 1.0000 |
| 8:6997573:TCA:T | donor_loss | 1.0000 |
| 8:6997574:CA:C | donor_loss | 1.0000 |
| 8:6997576:C:CA | donor_loss | 1.0000 |
| 8:6997627:T:TA | donor_gain | 0.9900 |
| 8:6997763:CCTGG:C | acceptor_loss | 0.9900 |
| 8:6997764:CT:C | acceptor_loss | 0.9900 |
| 8:6997765:T:C | acceptor_loss | 0.9900 |
| 8:6998123:T:TA | donor_gain | 0.9900 |
| 8:6998127:A:AC | donor_gain | 0.9900 |
| 8:6999121:A:AC | donor_gain | 0.9900 |
| 8:6999122:C:CC | donor_gain | 0.9900 |
| 8:6999122:CAGAT:C | donor_gain | 0.9900 |
| 8:6997003:C:CT | acceptor_gain | 0.9800 |
| 8:6997004:A:T | acceptor_gain | 0.9800 |
| 8:6997620:A:AT | donor_gain | 0.9800 |
| 8:6997622:C:CT | donor_gain | 0.9800 |
| 8:6997761:CAC:C | acceptor_gain | 0.9800 |
| 8:6998128:T:C | donor_gain | 0.9800 |
| 8:6999117:ACTT:A | donor_loss | 0.9800 |
| 8:6999118:CTT:C | donor_loss | 0.9800 |
| 8:6999119:TTA:T | donor_loss | 0.9800 |
| 8:6999120:TA:T | donor_loss | 0.9800 |
| 8:6999122:CA:C | donor_gain | 0.9800 |
| 8:6999122:CAG:C | donor_gain | 0.9800 |
| 8:6999122:CAGA:C | donor_gain | 0.9800 |
| 8:6996997:C:CC | acceptor_gain | 0.9700 |
| 8:6997012:C:CT | acceptor_gain | 0.9700 |
| 8:6997013:A:C | acceptor_gain | 0.9700 |
AlphaMissense
598 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:6996930:C:T | G81E | 0.988 |
| 8:6996902:C:A | W90C | 0.987 |
| 8:6996902:C:G | W90C | 0.987 |
| 8:6996969:C:G | C68S | 0.987 |
| 8:6996970:A:T | C68S | 0.987 |
| 8:6996954:C:T | C73Y | 0.986 |
| 8:6996930:C:A | G81V | 0.985 |
| 8:6996954:C:G | C73S | 0.985 |
| 8:6996955:A:T | C73S | 0.985 |
| 8:6996894:C:T | C93Y | 0.984 |
| 8:6996969:C:T | C68Y | 0.984 |
| 8:6996924:C:T | C83Y | 0.982 |
| 8:6996924:C:G | C83S | 0.981 |
| 8:6996925:A:T | C83S | 0.981 |
| 8:6996890:G:C | C94W | 0.980 |
| 8:6996893:G:C | C93W | 0.980 |
| 8:6996894:C:G | C93S | 0.980 |
| 8:6996895:A:T | C93S | 0.980 |
| 8:6996955:A:G | C73R | 0.980 |
| 8:6996975:C:G | C66S | 0.980 |
| 8:6996976:A:T | C66S | 0.980 |
| 8:6996975:C:T | C66Y | 0.979 |
| 8:6996953:G:C | C73W | 0.978 |
| 8:6996891:C:T | C94Y | 0.977 |
| 8:6996925:A:G | C83R | 0.977 |
| 8:6996942:T:A | E77V | 0.977 |
| 8:6996895:A:G | C93R | 0.976 |
| 8:6996965:T:A | R69S | 0.975 |
| 8:6996965:T:G | R69S | 0.975 |
| 8:6996976:A:G | C66R | 0.975 |
dbSNP variants (sampled 300 via entrez): RS1033087927 (8:6998835 C>T), RS1053058340 (8:6999541 C>A,T), RS113548638 (8:6998422 A>C), RS113591177 (8:6998471 C>T), RS1156661612 (8:6999359 A>C), RS1157215889 (8:6999744 C>A,G,T), RS1158083342 (8:7000161 G>A,C), RS1158590911 (8:6999406 A>G), RS1158910843 (8:6998690 A>T), RS1163879373 (8:6999180 G>C), RS1164108830 (8:6999657 C>T), RS1164147027 (8:6999581 G>A), RS1166193675 (8:6999853 C>T), RS1166330361 (8:6998602 T>C), RS1167585411 (8:6996273 A>C,G)
Disease associations
OMIM: gene `` | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST009269_9 | Dental caries (decayed and filled deciduous teeth) | 5.000000e-06 |
| GCST90002379_108 | Basophil count | 4.000000e-09 |
| GCST90002379_109 | Basophil count | 5.000000e-09 |
| GCST90002380_53 | Basophil percentage of white cells | 3.000000e-15 |
| GCST90002380_54 | Basophil percentage of white cells | 6.000000e-09 |
| GCST90002393_558 | Monocyte count | 2.000000e-14 |
| GCST90002394_316 | Monocyte percentage of white cells | 3.000000e-21 |
| GCST90002394_317 | Monocyte percentage of white cells | 6.000000e-11 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005090 | basophil count |
| EFO:0007992 | basophil percentage of leukocytes |
| EFO:0005091 | monocyte count |
| EFO:0007989 | monocyte percentage of leukocytes |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3885531 (PROTEIN-PROTEIN INTERACTION)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
5 total (human), top 5 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| fluorene-9-bisphenol | decreases expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Aflatoxin B1 | increases methylation | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3820562 | Binding | Inhibition of CCL5 (unknown origin)-HNP1 (unknown origin) interaction in HUVEC assessed as reduction in CCL5-HNP1-driven human monocyte adhesion at 100 ug/ml pre-incubated for 5 mins before human monocyte addition | Structure-Based Design of Peptidic Inhibitors of the Interaction between CC Chemokine Ligand 5 (CCL5) and Human Neutrophil Peptides 1 (HNP1). — J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.