DEFB103B
gene geneOn this page
Summary
DEFB103B (defensin beta 103B, HGNC:31702) is a protein-coding gene on chromosome 8p23.1, encoding Beta-defensin 103 (P81534). Exhibits antimicrobial activity against Gram-positive bacteria S.aureus and S.pyogenes, Gram-negative bacteria P.aeruginosa and E.coli and the yeast C.albicans.
Defensins form a family of microbicidal and cytotoxic peptides made by neutrophils. Members of the defensin family are highly similar in protein sequence. This gene encodes defensin, beta 103, which has broad spectrum antimicrobial activity and may play an important role in innate epithelial defense.
Source: NCBI Gene 55894 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 18 total — 1 pathogenic
- MANE Select transcript:
NM_018661
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:31702 |
| Approved symbol | DEFB103B |
| Name | defensin beta 103B |
| Location | 8p23.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000177243 |
| Ensembl biotype | protein_coding |
| OMIM | 606611 |
| Entrez | 55894 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000318124
RefSeq mRNA: 1 — MANE Select: NM_018661
NM_018661
CCDS: CCDS34810
Canonical transcript exons
ENST00000318124 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001623163 | 7428888 | 7429129 |
| ENSE00001665986 | 7430073 | 7430348 |
Expression profiles
Bgee: expression breadth broad, 23 present calls, max score 96.35.
Top tissues by expression
111 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 96.35 | gold quality |
| colonic epithelium | UBERON:0000397 | 37.20 | gold quality |
| ventricular zone | UBERON:0003053 | 36.48 | gold quality |
| cortical plate | UBERON:0005343 | 36.47 | gold quality |
| bone marrow cell | CL:0002092 | 36.16 | gold quality |
| ganglionic eminence | UBERON:0004023 | 35.49 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 33.38 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 32.15 | gold quality |
| bone marrow | UBERON:0002371 | 31.74 | gold quality |
| muscle tissue | UBERON:0002385 | 31.06 | gold quality |
| sural nerve | UBERON:0015488 | 30.93 | gold quality |
| tonsil | UBERON:0002372 | 30.00 | silver quality |
| stromal cell of endometrium | CL:0002255 | 29.87 | gold quality |
| prefrontal cortex | UBERON:0000451 | 29.04 | gold quality |
| monocyte | CL:0000576 | 28.96 | silver quality |
| leukocyte | CL:0000738 | 28.84 | silver quality |
| duodenum | UBERON:0002114 | 28.14 | gold quality |
| lymph node | UBERON:0000029 | 27.57 | gold quality |
| blood | UBERON:0000178 | 26.55 | gold quality |
| vermiform appendix | UBERON:0001154 | 26.42 | gold quality |
| uterine cervix | UBERON:0000002 | 26.07 | gold quality |
| gall bladder | UBERON:0002110 | 25.98 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 25.89 | gold quality |
| placenta | UBERON:0001987 | 25.81 | gold quality |
| urinary bladder | UBERON:0001255 | 25.72 | gold quality |
| ectocervix | UBERON:0012249 | 25.05 | gold quality |
| esophagus mucosa | UBERON:0002469 | 24.73 | gold quality |
| primary visual cortex | UBERON:0002436 | 24.61 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 24.08 | gold quality |
| fundus of stomach | UBERON:0001160 | 23.85 | silver quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.55 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): DUX4, FOS, JUN
Literature-anchored findings (GeneRIF, showing 40)
- HBD-3 is a broad-spectrum, inducible cationic antimicrobial peptide expressed at mucosal surfaces including pulmonary epithelia, esophagus, skin, placenta and gingiva. May also act as a chemokine for adaptive immune cells. (PMID:11223260)
- HBD-3 is a dimer, while HBD-1 and HBD-2 are monomeric. Subsequently, the NMR solution structures of HBD1 and HBD3 were determined using standard homonuclear techniques and compared with the previously determined solution structure of HBD2 (PMID:11741980)
- important role in the innate oral epithelial host defense (PMID:12013554)
- Expression of mRNA is upregulated during differentation of keratinocyte immortalized cell lines. (PMID:12727027)
- expression pattern of hBD-3 mRNA by in situ hybridization in normal oral epithelium, leukoplakia, and lichen planus (PMID:12825122)
- disulfide bonding in hBD3, although required for binding and activation of receptors for chemotaxis, is fully dispensable for its antimicrobial function (PMID:12840147)
- human endometrium expresses both HBD3 and HBD4 in a cycle-dependent manner; these natural antimicrobials will contribute to innate defences present in human endometrium protecting against uterine infection (PMID:12892899)
- the level of expression of hBD-1 mRNA is lower and that of hBD-3 was higher than that of hBD-2 in reconstructed epidermis (PMID:14703118)
- Calcium triggers beta-defensin (hBD-2 and hBD-3) and chemokine macrophage inflammatory protein-3 alpha (MIP-3alpha/CCL20) expression in monolayers of activated human keratinocytes (PMID:14714554)
- Expression of HBD-3 was detected only in areas adjacent to squamous cell carcinomas (PMID:14981906)
- The expression of HBD3 and two other beta defensins was correlated with induction profiles in gingival keratinocytes. (PMID:15829297)
- beta-defensin 3 (HBD-3) is a multifunctional antimicrobial peptide with the ability to link host defense mechanisms and inflammation with tissue-remodeling processes in articular cartilage. (PMID:15934078)
- Human beta defensin-3 activates normal human keratinocytes to secrete IL-18 (PMID:16034119)
- results demonstrate that antimicrobial activity & absence of cytotoxicity can be explained by lipid-specificity of hBD3; clear correlation between these aspects of biological activity of hBD3 & its interaction with lipid matrices could be found. (PMID:16634647)
- hyphal-invasion-dependent inhibition of defensin expression in oral epithelium that undermines the host surveillance system represents a hitherto undescribed novel pathogenic mechanism of C. albicans (PMID:16741514)
- hBD-3 is strongly induced in human skin wounds (PMID:16778986)
- Recombinant human beta-defensin 3 induces internalization of HIV-1 coreceptor CXCR4 without promoting calcium flux, ERK-1/2 phosphorylation, or chemotaxis. (PMID:16818731)
- The gene expression of hBD-3 in primary human keratinocytes upon contact with S. aureus was studied. (PMID:16954397)
- Our results suggest that like hBD-2, hBD-3 may be involved in the pathophysiology of H. pylori-induced gastritis. (PMID:17007044)
- deficiency in human beta defensin-3 expression is an acquired rather than a constitutive defect (PMID:17015038)
- As compared to healthy controls, skin of patients with mycosis fungoides (non-lesional and lesional) and atopic dermatitis patients showed significantly lower hBD-1 mRNA expression and significantly higher hBD-2 and hBD-3 mRNA expression. (PMID:17415576)
- Blocking peptide binding of HBD3 inhibited killing of the bacteria, indicating an essential role for beta-defensin 3 in the constitutive killing of bacteria by normal keratinocytes. (PMID:17460726)
- activation of NF-kappaB by hBD-3 depends on the expression of both TLR1 and TLR2 (PMID:18006661)
- both hBD3 and mBD14 were chemotactic for freshly isolated mouse resident peritoneal cells. Thus, mBD14, based on structural and functional similarities, appears to be an orthologue of hBD3. (PMID:18167348)
- chemoattractant and antimicrobial activities of beta-defensins can be separated, and both of these functions are independent of intramolecular disulfide bonds (PMID:18180295)
- Results describe the relationship between human beta-defensin 3 (hBD3) expression and mean histamine concentration in human placental tissue. (PMID:18345484)
- Results indicate that lipopolysaccharide-induced activation of Toll-like receptor 4 in chorioamnionitis triggers increased production of beta-defensin 3. (PMID:18345485)
- p21, a cyclin-dependent kinase inhibitor downstream of S100/A11, is required for calcium-mediated induction of HBD-3 and filaggrin. (PMID:18385759)
- Francisella tularensis LVS infection has no effect on the level of hBD-3 in airway epithelial cells. (PMID:18452706)
- Patients with atopic dermatitis have problems with S. aureus skin infection. This is a result of increased levels of T(H)2 cytokines, which inhibit keratinocyte mobilization of HBD-3. (PMID:18538383)
- expression was found even in non-inflamed pseudocysts such as mucoceles (PMID:18627502)
- HBD3 binds recombinant hemagglutinin B (rHagB), a non-fimbrial adhesin from Porphyromonas gingivalis and this interaction may be an important initial step to attenuate a pro-inflammatory cytokine response and an ERK 1/2 response. (PMID:18711400)
- bacterial induction of HBD-3 via TLR-2 and -4 in bone (PMID:18925411)
- Results describe a reaction mechanism to elucidate the oxidation results of two linear cysteine-containing peptide analogues of human beta-defensin 3. (PMID:19108000)
- Increased expression of beta-defensin 3 is associated with oral squamous cell carcinomas. (PMID:19219676)
- Results indicate that in addition to the number of positively charged residues and hydrophobic residues, the arrangement of these residues in the 3-D space is important to the antimicrobial selectivity and salt-dependent activity beta defensins. (PMID:19480463)
- no association of amniotic fluid HBD3 with preterm birth (PMID:19554343)
- Results describe the structures of three C-terminal (R36-K45) analogues of human beta-defensin-3 as studied by 1H NMR spectroscopy and extensive molecular dynamics simulations. (PMID:19580334)
- differential modulation of expression in gingival epithelia by Porphyromonas gingivalis lipopolysaccharide isoforms (PMID:19675119)
- The ability to be induced was significantly reduced in OSCC. (PMID:19702947)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Defb14 | ENSMUSG00000046354 |
| rattus_norvegicus | Defb14 | ENSRNOG00000032304 |
Paralogs (1): DEFB103A (ENSG00000176797)
Protein
Protein identifiers
Beta-defensin 103 — P81534 (reviewed: P81534)
Alternative names: Beta-defensin 3, Defensin, beta 103, Defensin-like protein
All UniProt accessions (2): P81534, A0A894JZ42
UniProt curated annotations — full annotation on UniProt →
Function. Exhibits antimicrobial activity against Gram-positive bacteria S.aureus and S.pyogenes, Gram-negative bacteria P.aeruginosa and E.coli and the yeast C.albicans. Kills multiresistant S.aureus and vancomycin-resistant E.faecium. No significant hemolytic activity was observed.
Subcellular location. Secreted.
Tissue specificity. Highly expressed in skin and tonsils, and to a lesser extent in trachea, uterus, kidney, thymus, adenoid, pharynx and tongue. Low expression in salivary gland, bone marrow, colon, stomach, polyp and larynx. No expression in small intestine.
Induction. By bacterial infection and by IFNG/IFN-gamma.
Similarity. Belongs to the beta-defensin family.
RefSeq proteins (1): NP_061131* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001855 | Defensin_beta-like | Domain |
Pfam: PF00711
UniProt features (12 total): strand 4, disulfide bond 3, signal peptide 1, peptide 1, sequence conflict 1, turn 1, helix 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1KJ6 | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P81534-F1 | 85.23 | 0.42 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (3): 33–62, 40–55, 45–63
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-1461957 | Beta defensins |
| R-HSA-1461973 | Defensins |
MSigDB gene sets: 40 (showing top):
REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_ANTIMICROBIAL_HUMORAL_RESPONSE, GOBP_CELL_CHEMOTAXIS, GOBP_TAXIS, GOBP_DEFENSE_RESPONSE_TO_OTHER_ORGANISM, GOBP_HUMORAL_IMMUNE_RESPONSE, GOBP_DEFENSE_RESPONSE_TO_GRAM_NEGATIVE_BACTERIUM, GOBP_DEFENSE_RESPONSE_TO_GRAM_POSITIVE_BACTERIUM, GOMF_G_PROTEIN_COUPLED_RECEPTOR_BINDING, GOBP_BIOLOGICAL_PROCESS_INVOLVED_IN_INTERACTION_WITH_SYMBIONT, GOBP_DEFENSE_RESPONSE_TO_BACTERIUM, GOMF_SIGNALING_RECEPTOR_BINDING, GOBP_CELL_KILLING, DURCHDEWALD_SKIN_CARCINOGENESIS_DN, GOBP_POSITIVE_CHEMOTAXIS
GO Biological Process (9): killing of cells of another organism (GO:0031640), defense response to bacterium (GO:0042742), defense response to Gram-negative bacterium (GO:0050829), defense response to Gram-positive bacterium (GO:0050830), obsolete killing by host of symbiont cells (GO:0051873), cell chemotaxis (GO:0060326), defense response (GO:0006952), positive chemotaxis (GO:0050918), defense response to symbiont (GO:0140546)
GO Molecular Function (3): CCR6 chemokine receptor binding (GO:0031731), chemoattractant activity (GO:0042056), protein binding (GO:0005515)
GO Cellular Component (3): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), Golgi lumen (GO:0005796)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Defensins | 1 |
| Antimicrobial peptides | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| defense response to bacterium | 2 |
| chemotaxis | 2 |
| cell killing | 1 |
| disruption of cell in another organism | 1 |
| defense response | 1 |
| response to bacterium | 1 |
| cell migration | 1 |
| cellular response to chemical stimulus | 1 |
| response to stress | 1 |
| defense response to other organism | 1 |
| CCR chemokine receptor binding | 1 |
| receptor ligand activity | 1 |
| positive chemotaxis | 1 |
| binding | 1 |
| cellular anatomical structure | 1 |
| Golgi apparatus | 1 |
| intracellular organelle lumen | 1 |
Protein interactions and networks
STRING
704 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DEFB103B | CCR6 | P51684 | 976 |
| DEFB103B | CCR2 | P41597 | 971 |
| DEFB103B | DEFB104A | Q8WTQ1 | 967 |
| DEFB103B | CCRL2 | O00421 | 967 |
| DEFB103B | DEFB1 | P60022 | 953 |
| DEFB103B | CXCR4 | P30991 | 912 |
| DEFB103B | DEFB105A | Q8NG35 | 880 |
| DEFB103B | CAMP | P49913 | 873 |
| DEFB103B | DEFB106A | Q8N104 | 861 |
| DEFB103B | S100A7 | P31151 | 849 |
| DEFB103B | SLPI | P03973 | 837 |
| DEFB103B | A0A0G2JN59 | A0A0G2JN59 | 823 |
| DEFB103B | ASIP | P42127 | 800 |
| DEFB103B | RNASE7 | P80927 | 790 |
| DEFB103B | LCN2 | P30150 | 770 |
| DEFB103B | DEFB107A | Q8IZN7 | 770 |
IntAct
34 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DEFB103A | SPATA31A7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DEFB103A | psi-mi:“MI:0915”(physical association) | 0.560 | |
| TMPRSS2 | DEFB103A | psi-mi:“MI:0915”(physical association) | 0.560 |
| DEFB103A | B3GALT5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DEFB103A | EBP | psi-mi:“MI:0915”(physical association) | 0.560 |
| DEFB103A | SSMEM1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DEFB103A | ERGIC3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DEFB103A | SCN3B | psi-mi:“MI:0915”(physical association) | 0.560 |
| DEFB103A | ODF4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DEFB103A | TMEM14B | psi-mi:“MI:0915”(physical association) | 0.560 |
| DEFB103A | AQP6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPATA31A7 | DEFB103A | psi-mi:“MI:0915”(physical association) | 0.000 |
| DEFB103A | psi-mi:“MI:0915”(physical association) | 0.000 | |
| DEFB103A | TMPRSS2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| B3GALT5 | DEFB103A | psi-mi:“MI:0915”(physical association) | 0.000 |
| DEFB103A | EBP | psi-mi:“MI:0915”(physical association) | 0.000 |
| DEFB103A | SSMEM1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DEFB103A | ERGIC3 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DEFB103A | SCN3B | psi-mi:“MI:0915”(physical association) | 0.000 |
| DEFB103A | ODF4 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DEFB103A | TMEM14B | psi-mi:“MI:0915”(physical association) | 0.000 |
| DEFB103A | AQP6 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (27): DEFB103A (Reconstituted Complex), DEFB103B (Reconstituted Complex), XOG1 (Reconstituted Complex), XOG1 (Reconstituted Complex), DEFB103A (Two-hybrid), DEFB103B (Two-hybrid), DEFB103A (Two-hybrid), DEFB103B (Two-hybrid), DEFB103A (Two-hybrid), DEFB103B (Two-hybrid), DEFB103A (Two-hybrid), DEFB103B (Two-hybrid), DEFB103A (Two-hybrid), DEFB103B (Two-hybrid), DEFB103A (Two-hybrid)
ESM2 similar proteins: A0A7G6KN55, A3RJ36, A4H1Z9, A4H200, A4H202, A4H203, A4H204, O02775, O15263, O19038, O19039, O62697, O88514, O89117, O97946, P0C8A6, P0C8A7, P25068, P46156, P46157, P46161, P46162, P46163, P46165, P46167, P46168, P46169, P56386, P80391, P81534, P82019, P83943, Q0E4V3, Q28880, Q32ZH7, Q32ZI0, Q32ZI3, Q32ZI4, Q6IV23, Q6IV26
Diamond homologs: A3RJ36, A4H200, O02775, O15263, O18815, O19038, O19039, O62697, O88514, O97946, P25068, P46159, P46160, P46161, P46162, P46163, P46164, P46165, P46166, P46167, P46168, P46169, P46170, P46171, P81534, P83943, P85150, Q0W9P9, Q28880, Q32ZI3, Q32ZI4, Q6QLR1, Q91V70, Q91V82, Q91VD6, Q95JD2, Q9BDS9, Q9TT12, Q9WTL0, A4H1Z9
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
18 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 0 |
| Likely benign | 0 |
| Benign | 17 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 974794 | GRCh37/hg19 8p23.3-23.1(chr8:176814-11472913)x1 | Pathogenic |
SpliceAI
84 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:7429130:C:CC | acceptor_gain | 0.9800 |
| 8:7429130:CTG:C | acceptor_loss | 0.9800 |
| 8:7430067:TCTTA:T | donor_loss | 0.9800 |
| 8:7430068:CTTA:C | donor_loss | 0.9800 |
| 8:7430069:TTA:T | donor_loss | 0.9800 |
| 8:7430070:TAC:T | donor_loss | 0.9800 |
| 8:7430072:C:CG | donor_loss | 0.9800 |
| 8:7429126:TGAC:T | acceptor_gain | 0.9700 |
| 8:7429131:T:G | acceptor_loss | 0.9700 |
| 8:7429127:GAC:G | acceptor_gain | 0.9600 |
| 8:7429135:A:AC | acceptor_gain | 0.9600 |
| 8:7429139:C:CT | acceptor_gain | 0.9600 |
| 8:7430132:G:C | donor_gain | 0.9400 |
| 8:7429125:ATGAC:A | acceptor_gain | 0.9300 |
| 8:7429145:A:T | acceptor_gain | 0.9300 |
| 8:7429128:AC:A | acceptor_gain | 0.9200 |
| 8:7429129:CC:C | acceptor_gain | 0.9200 |
| 8:7429133:C:CT | acceptor_gain | 0.9100 |
| 8:7429140:A:T | acceptor_gain | 0.9100 |
| 8:7429134:A:T | acceptor_gain | 0.9000 |
| 8:7430124:T:TA | donor_gain | 0.9000 |
| 8:7429135:A:C | acceptor_gain | 0.8300 |
| 8:7430066:ATCTT:A | donor_loss | 0.8200 |
| 8:7430071:A:AC | donor_gain | 0.8100 |
| 8:7430072:C:CC | donor_gain | 0.8100 |
| 8:7429144:C:CT | acceptor_gain | 0.7900 |
| 8:7429147:C:CT | acceptor_gain | 0.7800 |
| 8:7430143:TC:T | donor_gain | 0.7200 |
| 8:7429130:C:A | acceptor_gain | 0.6200 |
| 8:7429131:T:C | acceptor_gain | 0.6000 |
AlphaMissense
420 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1001577733 (8:7432017 C>T), RS1007465809 (8:7428745 T>A,C), RS1011319068 (8:7431889 T>TA), RS1017977123 (8:7428843 A>T), RS1021279246 (8:7430645 T>A), RS1021833074 (8:7431930 G>A), RS1031480516 (8:7429016 G>A), RS1035380534 (8:7432073 A>G), RS1037210537 (8:7428544 G>A), RS1041061460 (8:7431635 A>C,G), RS1048370748 (8:7428690 A>C,G,T), RS1048988467 (8:7431499 G>A), RS1052866628 (8:7431796 A>G), RS1157734548 (8:7431950 A>G), RS1157968155 (8:7428410 A>C)
Disease associations
OMIM: gene MIM:606611 | disease phenotypes:
GenCC curated gene-disease
Mondo (2): cerebellar ataxia (MONDO:0000437), intellectual disability (MONDO:0001071)
Orphanet (2): Rare ataxia (Orphanet:102002), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002524 | Cerebellar Ataxia | C10.228.140.252.190; C10.597.350.090.500; C23.888.592.350.090.200 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
8 total (human), top 8 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Air Pollutants | increases abundance, increases expression | 1 |
| Copper | affects binding, decreases expression | 1 |
| Disulfiram | affects binding, decreases expression | 1 |
| Plant Oils | increases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Copper Sulfate | increases expression | 1 |
| Lactic Acid | decreases expression | 1 |
| Particulate Matter | increases abundance, increases expression | 1 |
Clinical trials (associated diseases)
299 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00950196 | PHASE4 | COMPLETED | Amantadine for Improving Neurologic Symptoms in Ataxia-Telangiectasia |
| NCT04107740 | PHASE4 | COMPLETED | C-Trelin Orally Disintegrated(OD) Tablet 5mg in Ataxia Due to Spinocerebellar Degeneration |
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT01970098 | PHASE3 | COMPLETED | A Confirmatory Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01970111 | PHASE3 | COMPLETED | An Extension Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01970124 | PHASE3 | COMPLETED | A Long-Term Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01970137 | PHASE3 | COMPLETED | A 24-week Open-label Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT02889302 | PHASE3 | COMPLETED | An Additional Confirmatory Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT03408080 | PHASE3 | ACTIVE_NOT_RECRUITING | Open Pilot Trial of BHV-4157 |
| NCT03701399 | PHASE3 | ACTIVE_NOT_RECRUITING | Troriluzole in Adult Participants With Spinocerebellar Ataxia |
| NCT03901638 | PHASE3 | TERMINATED | Tllsh2910 for Ataxia and Gut Microbiota Alteration in Patients of Multiple System Atrophy |
| NCT07040137 | PHASE3 | RECRUITING | Confirmatory Study 3 of KPS-0373 in Patients With Spinocerebellar Degeneration |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT00034242 | PHASE2 | COMPLETED | High-Dose Intravenous Immunoglobulin to Treat Cerebellar Degeneration |
| NCT00202397 | PHASE2 | COMPLETED | Effect of Riluzole as a Symptomatic Approach in Patients With Chronic Cerebellar Ataxia |
| NCT00863538 | PHASE2 | COMPLETED | Phase II Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01004016 | PHASE2 | COMPLETED | A Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01350440 | PHASE2 | COMPLETED | Safety and Efficacy of Intravenous Immune Globulin in Treating Spinocerebellar Ataxia |
| NCT02540655 | PHASE2 | COMPLETED | Efficacy and Safety Study of Stemchymal® in Polyglutamine Spinocerebellar Ataxia |
| NCT03932669 | PHASE2 | COMPLETED | Effect of Nilotinib in Cerebellar Ataxia Patients |
| NCT04301284 | PHASE2 | WITHDRAWN | Study of CAD-1883 for Spinocerebellar Ataxia |
| NCT05125666 | PHASE2 | UNKNOWN | Efficacy of Dual Task Training on Children With Ataxia After Medulloblastoma Resection |
| NCT06397274 | PHASE2 | NOT_YET_RECRUITING | Stemchymal® for Polyglutamine Spinocerebellar Ataxia |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT00683943 | PHASE1 | COMPLETED | Lithium Treatment for Patients With Spinocerebellar Ataxia Type I |
| NCT02287064 | PHASE1 | UNKNOWN | An Open-label Trial of Intravenous Immune Globulin (IVIG)in Treating Spinocerebellar Ataxias |
| NCT05157802 | PHASE1 | ACTIVE_NOT_RECRUITING | Promoting Physical Activity Engagement for People With Early-stage Cerebellar Ataxia |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT01104649 | PHASE2/PHASE3 | COMPLETED | Efficacy of Riluzole in Hereditary Cerebellar Ataxia |
| NCT02960893 | PHASE2/PHASE3 | COMPLETED | Trial in Adult Participants With Spinocerebellar Ataxia (SCA) |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cerebellar ataxia