DENND5B
geneOn this page
Also known as MGC24039
Summary
DENND5B (DENN domain containing 5B, HGNC:28338) is a protein-coding gene on chromosome 12p11.21, encoding DENN domain-containing protein 5B (Q6ZUT9). Guanine nucleotide exchange factor (GEF) which may activate RAB39A and/or RAB39B.
Enables guanyl-nucleotide exchange factor activity. Predicted to be involved in positive regulation of triglyceride transport. Predicted to be located in cytosol.
Source: NCBI Gene 160518 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder (Strong, GenCC) — +2 more curated relationships
- GWAS associations: 8
- Clinical variants (ClinVar): 213 total
- MANE Select transcript:
NM_144973
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28338 |
| Approved symbol | DENND5B |
| Name | DENN domain containing 5B |
| Location | 12p11.21 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC24039 |
| Ensembl gene | ENSG00000170456 |
| Ensembl biotype | protein_coding |
| OMIM | 617279 |
| Entrez | 160518 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 13 protein_coding, 1 retained_intron, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000354285, ENST00000389082, ENST00000536562, ENST00000537061, ENST00000544698, ENST00000545147, ENST00000546299, ENST00000897818, ENST00000897819, ENST00000897820, ENST00000897821, ENST00000948236, ENST00000948237, ENST00000948238, ENST00000948239, ENST00000948240
RefSeq mRNA: 6 — MANE Select: NM_144973
NM_001308339, NM_001366890, NM_001366891, NM_001366892, NM_001366893, NM_144973
CCDS: CCDS44857, CCDS76542, CCDS91679
Canonical transcript exons
ENST00000389082 — 21 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001098199 | 31415367 | 31415448 |
| ENSE00001098200 | 31426293 | 31426424 |
| ENSE00001159165 | 31389324 | 31389498 |
| ENSE00001159172 | 31392267 | 31392393 |
| ENSE00001159177 | 31392614 | 31392696 |
| ENSE00001159186 | 31398175 | 31398362 |
| ENSE00001159192 | 31399654 | 31399772 |
| ENSE00001159199 | 31402498 | 31402643 |
| ENSE00001186179 | 31409263 | 31409384 |
| ENSE00001186182 | 31413436 | 31413564 |
| ENSE00001186192 | 31433155 | 31433248 |
| ENSE00001186195 | 31442775 | 31442925 |
| ENSE00001270461 | 31460194 | 31460381 |
| ENSE00001270470 | 31479589 | 31480255 |
| ENSE00001270533 | 31423597 | 31423675 |
| ENSE00001270616 | 31451940 | 31452476 |
| ENSE00001270646 | 31382226 | 31387786 |
| ENSE00001340152 | 31447538 | 31447769 |
| ENSE00001674731 | 31424535 | 31424687 |
| ENSE00002246411 | 31590706 | 31591136 |
| ENSE00003558715 | 31495810 | 31495919 |
Expression profiles
Bgee: expression breadth ubiquitous, 261 present calls, max score 94.48.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.3995 / max 166.1112, expressed in 1668 samples.
FANTOM5 promoters (12 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 130361 | 5.3994 | 1486 |
| 130365 | 4.5380 | 1310 |
| 130367 | 0.7176 | 400 |
| 130363 | 0.4230 | 243 |
| 130364 | 0.3987 | 218 |
| 130366 | 0.3954 | 190 |
| 130362 | 0.2602 | 103 |
| 130359 | 0.1402 | 60 |
| 130360 | 0.0987 | 43 |
| 130356 | 0.0178 | 2 |
Top tissues by expression
284 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lateral nuclear group of thalamus | UBERON:0002736 | 94.48 | gold quality |
| pons | UBERON:0000988 | 92.90 | gold quality |
| endothelial cell | CL:0000115 | 91.78 | silver quality |
| superior vestibular nucleus | UBERON:0007227 | 91.36 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 91.29 | gold quality |
| ventricular zone | UBERON:0003053 | 90.90 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 90.32 | gold quality |
| cortical plate | UBERON:0005343 | 89.97 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 89.22 | gold quality |
| ganglionic eminence | UBERON:0004023 | 89.09 | gold quality |
| jejunal mucosa | UBERON:0000399 | 89.02 | gold quality |
| cerebellar vermis | UBERON:0004720 | 89.01 | gold quality |
| secondary oocyte | CL:0000655 | 88.66 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 88.48 | gold quality |
| adrenal tissue | UBERON:0018303 | 88.38 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 88.33 | gold quality |
| heart right ventricle | UBERON:0002080 | 88.00 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 87.75 | gold quality |
| ventral tegmental area | UBERON:0002691 | 87.70 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 86.54 | gold quality |
| oocyte | CL:0000023 | 86.17 | gold quality |
| occipital lobe | UBERON:0002021 | 85.47 | gold quality |
| primary visual cortex | UBERON:0002436 | 85.45 | gold quality |
| medulla oblongata | UBERON:0001896 | 85.42 | gold quality |
| parietal lobe | UBERON:0001872 | 85.27 | gold quality |
| jejunum | UBERON:0002115 | 84.97 | gold quality |
| globus pallidus | UBERON:0001875 | 84.87 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 84.84 | gold quality |
| medial globus pallidus | UBERON:0002477 | 84.45 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 84.22 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 14.80 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
243 targeting DENND5B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-518D-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-518E-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-518F-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-519A-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519B-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519C-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-520C-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-522-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-523-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-526A-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-223-3P | 99.99 | 70.14 | 1140 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
Literature-anchored findings (GeneRIF, showing 1)
- De novo variants in DENND5B cause a neurodevelopmental disorder. (PMID:38387458)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dennd5b | ENSDARG00000003789 |
| mus_musculus | Dennd5b | ENSMUSG00000030313 |
| rattus_norvegicus | Dennd5b | ENSRNOG00000049378 |
Paralogs (10): PKD1 (ENSG00000008710), PKD2L2 (ENSG00000078795), PKD2L1 (ENSG00000107593), PKD2 (ENSG00000118762), PKDREJ (ENSG00000130943), PKD1L1 (ENSG00000158683), PKD1L2 (ENSG00000166473), LOXHD1 (ENSG00000167210), DENND5A (ENSG00000184014), PKD1L3 (ENSG00000277481)
Protein
Protein identifiers
DENN domain-containing protein 5B — Q6ZUT9 (reviewed: Q6ZUT9)
Alternative names: Rab6IP1-like protein
All UniProt accessions (4): Q6ZUT9, F5H4A0, G3V1S3, H0YGE5
UniProt curated annotations — full annotation on UniProt →
Function. Guanine nucleotide exchange factor (GEF) which may activate RAB39A and/or RAB39B. Promotes the exchange of GDP to GTP, converting inactive GDP-bound Rab proteins into their active GTP-bound form.
Subcellular location. Membrane.
Similarity. Belongs to the RAB6IP1 family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6ZUT9-1 | 1 | yes |
| Q6ZUT9-2 | 2 | |
| Q6ZUT9-3 | 3 | |
| Q6ZUT9-4 | 4 |
RefSeq proteins (6): NP_001295268, NP_001353819, NP_001353820, NP_001353821, NP_001353822, NP_659410* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001024 | PLAT/LH2_dom | Domain |
| IPR001194 | cDENN_dom | Domain |
| IPR004012 | Run_dom | Domain |
| IPR005112 | dDENN_dom | Domain |
| IPR005113 | uDENN_dom | Domain |
| IPR036392 | PLAT/LH2_dom_sf | Homologous_superfamily |
| IPR037213 | Run_dom_sf | Homologous_superfamily |
| IPR037516 | Tripartite_DENN | Domain |
| IPR043153 | DENN_C | Homologous_superfamily |
| IPR047277 | PLAT_RAB6IP1 | Domain |
| IPR047278 | DEN5A/B | Family |
| IPR047292 | RUN2_DENND5B | Domain |
| IPR047293 | RUN1_DENND5B | Domain |
Pfam: PF01477, PF02141, PF02759, PF03455, PF03456
UniProt features (31 total): modified residue 8, splice variant 7, domain 6, sequence conflict 5, sequence variant 2, initiator methionine 1, chain 1, transmembrane region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6ZUT9-F1 | 77.12 | 0.39 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (8): 49, 178, 822, 1062, 1068, 1076, 1079, 2
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-8876198 | RAB GEFs exchange GTP for GDP on RABs |
MSigDB gene sets: 138 (showing top):
GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_YELLOW_DN, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, REACTOME_MEMBRANE_TRAFFICKING, GOMF_GTPASE_BINDING, GOBP_POSITIVE_REGULATION_OF_LIPID_TRANSPORT, chr12p11, GOBP_POSITIVE_REGULATION_OF_TRANSPORT, TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_16D_UP, GOBP_REGULATION_OF_TRANSPORT, GOBP_LIPID_LOCALIZATION, GOMF_GUANYL_NUCLEOTIDE_EXCHANGE_FACTOR_ACTIVITY, GOMF_NUCLEOSIDE_TRIPHOSPHATASE_REGULATOR_ACTIVITY, GOMF_ENZYME_REGULATOR_ACTIVITY, TOYOTA_TARGETS_OF_MIR34B_AND_MIR34C
GO Biological Process (1): positive regulation of triglyceride transport (GO:1905885)
GO Molecular Function (3): guanyl-nucleotide exchange factor activity (GO:0005085), small GTPase binding (GO:0031267), protein binding (GO:0005515)
GO Cellular Component (2): cytosol (GO:0005829), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Rab regulation of trafficking | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| triglyceride transport | 1 |
| positive regulation of acylglycerol transport | 1 |
| regulation of triglyceride transport | 1 |
| GTP binding | 1 |
| GDP binding | 1 |
| GTPase regulator activity | 1 |
| GTPase binding | 1 |
| binding | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
703 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DENND5B | SMAP1 | Q8IYB5 | 521 |
| DENND5B | ITFG1 | Q8TB96 | 471 |
| DENND5B | VOPP1 | Q96AW1 | 464 |
| DENND5B | ZMAT4 | Q9H898 | 456 |
| DENND5B | C5orf63 | A6NC05 | 454 |
| DENND5B | SLC24A3 | Q9HC58 | 443 |
| DENND5B | RAB28 | P51157 | 435 |
| DENND5B | WIPF2 | Q8TF74 | 425 |
| DENND5B | DENND4B | O75064 | 414 |
| DENND5B | DENND1C | Q8IV53 | 412 |
| DENND5B | ZMYM4 | Q5VZL5 | 391 |
| DENND5B | ST8SIA3 | O43173 | 386 |
| DENND5B | OR8B12 | Q8NGG6 | 379 |
| DENND5B | SMIM19 | Q96E16 | 377 |
| DENND5B | IGF2R | P11717 | 374 |
IntAct
4 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RNLS | STATH | psi-mi:“MI:0914”(association) | 0.350 |
| DENND5A | BEND3 | psi-mi:“MI:0914”(association) | 0.350 |
| DENND5B | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (25): DENND5B (Affinity Capture-RNA), DENND5B (Affinity Capture-RNA), DENND5B (Synthetic Lethality), DENND5B (Affinity Capture-MS), DENND5B (Proximity Label-MS), DENND5B (Proximity Label-MS), DENND5B (Proximity Label-MS), DENND5B (Negative Genetic), DENND5B (Proximity Label-MS), DENND5B (Proximity Label-MS), DENND5B (Proximity Label-MS), DENND5B (Proximity Label-MS), DENND5B (Proximity Label-MS), DENND5B (Proximity Label-MS), DENND5B (Affinity Capture-MS)
ESM2 similar proteins: A0M8S0, A0M8T1, A0M8U1, A3KN28, A4D7R9, A6QL63, A9JRA0, B5DEN9, P13666, Q00PJ0, Q07DV5, Q07DW9, Q07DX8, Q07DY8, Q07E08, Q07E45, Q09YH4, Q09YI5, Q09YJ7, Q09YK8, Q09YN2, Q108U3, Q1RLU8, Q2IBA8, Q2IBD0, Q2IBE0, Q2IBE8, Q2PG42, Q2QL86, Q2QLA6, Q2QLB7, Q2QLD7, Q2QLE8, Q2QLG2, Q3T178, Q5R8N4, Q68FW3, Q6ZUT9, Q7TQ48, Q7Z3J2
Diamond homologs: A2RSQ0, C8YR32, G3V7Q0, Q5FVJ0, Q6IQ26, Q6NXD8, Q6P3S1, Q6PAL8, Q6ZUT9, Q8BIJ7, Q8C4S8, Q8CFK6, Q8IV53, Q8IVV2, Q8RXA7, Q8WXG6, Q96T51, Q9TXP3, B8UU59, E7FKV8, O08852, O16025, P09917, P12527, P48999, P51399, P98161, Q09624, Q2EG98, Q7TN88, Q7Z442, Q7Z443, Q8R526, Q8TDX9, Q9NTG1, Q9Z0T6, Q3U1T9, Q9ULE3, G2WWH6, I1RQE2
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
213 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 169 |
| Likely benign | 23 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3866 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:31387616:C:CA | donor_gain | 1.0000 |
| 12:31389318:TTGTA:T | donor_loss | 1.0000 |
| 12:31389319:TGTA:T | donor_loss | 1.0000 |
| 12:31389320:GTACC:G | donor_loss | 1.0000 |
| 12:31389321:TA:T | donor_loss | 1.0000 |
| 12:31389323:C:G | donor_loss | 1.0000 |
| 12:31389360:T:TA | donor_gain | 1.0000 |
| 12:31389496:TCTC:T | acceptor_loss | 1.0000 |
| 12:31389497:CT:C | acceptor_gain | 1.0000 |
| 12:31389498:TCT:T | acceptor_loss | 1.0000 |
| 12:31389499:C:CC | acceptor_gain | 1.0000 |
| 12:31389499:CTGAG:C | acceptor_loss | 1.0000 |
| 12:31389500:T:C | acceptor_loss | 1.0000 |
| 12:31392697:C:CC | acceptor_gain | 1.0000 |
| 12:31398173:A:AC | donor_gain | 1.0000 |
| 12:31398174:C:CC | donor_gain | 1.0000 |
| 12:31398185:T:TA | donor_gain | 1.0000 |
| 12:31398207:AATCT:A | donor_gain | 1.0000 |
| 12:31398362:TC:T | acceptor_loss | 1.0000 |
| 12:31398364:T:A | acceptor_loss | 1.0000 |
| 12:31399771:CA:C | acceptor_gain | 1.0000 |
| 12:31399773:C:CC | acceptor_gain | 1.0000 |
| 12:31402493:CCTA:C | donor_loss | 1.0000 |
| 12:31402495:TAC:T | donor_loss | 1.0000 |
| 12:31402496:ACC:A | donor_loss | 1.0000 |
| 12:31402497:C:CG | donor_loss | 1.0000 |
| 12:31402639:AATCA:A | acceptor_gain | 1.0000 |
| 12:31402640:ATCA:A | acceptor_gain | 1.0000 |
| 12:31402641:TCA:T | acceptor_gain | 1.0000 |
| 12:31402642:CA:C | acceptor_gain | 1.0000 |
AlphaMissense
8422 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:31398346:A:G | W1029R | 1.000 |
| 12:31398346:A:T | W1029R | 1.000 |
| 12:31398360:A:G | F1024S | 1.000 |
| 12:31399690:A:T | V1011D | 1.000 |
| 12:31409319:A:G | L916P | 1.000 |
| 12:31413469:A:G | L883P | 1.000 |
| 12:31413496:A:G | L874P | 1.000 |
| 12:31413502:A:G | L872P | 1.000 |
| 12:31413512:A:G | W869R | 1.000 |
| 12:31413512:A:T | W869R | 1.000 |
| 12:31423660:A:G | W803R | 1.000 |
| 12:31423660:A:T | W803R | 1.000 |
| 12:31424561:A:G | W789R | 1.000 |
| 12:31424561:A:T | W789R | 1.000 |
| 12:31424572:A:G | L785P | 1.000 |
| 12:31424575:A:G | L784P | 1.000 |
| 12:31424584:A:G | L781P | 1.000 |
| 12:31424674:A:G | L751S | 1.000 |
| 12:31426326:G:C | F735L | 1.000 |
| 12:31426326:G:T | F735L | 1.000 |
| 12:31426328:A:G | F735L | 1.000 |
| 12:31442874:G:T | P638Q | 1.000 |
| 12:31447759:A:G | L547P | 1.000 |
| 12:31460243:A:G | L348P | 1.000 |
| 12:31460247:C:G | G347R | 1.000 |
| 12:31460261:A:T | V342D | 1.000 |
| 12:31460267:G:T | A340D | 1.000 |
| 12:31460273:A:G | L338P | 1.000 |
| 12:31460275:A:C | F337L | 1.000 |
| 12:31460275:A:T | F337L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000013498 (12:31395303 C>T), RS1000018207 (12:31523025 G>A), RS1000021250 (12:31385980 G>A), RS1000029459 (12:31553704 C>A,T), RS1000038128 (12:31514514 G>A), RS1000061988 (12:31396545 A>C), RS1000067847 (12:31431119 T>C,G), RS1000113882 (12:31402393 T>C), RS1000127919 (12:31393051 C>T), RS1000136563 (12:31485932 G>A), RS1000144004 (12:31422093 G>A,C), RS1000162428 (12:31505222 T>C), RS1000171100 (12:31547642 C>G,T), RS1000177000 (12:31476967 G>A), RS1000177199 (12:31392767 T>C)
Disease associations
OMIM: gene MIM:617279 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder | Strong | Autosomal dominant |
| hypoplastic left heart syndrome | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| complex neurodevelopmental disorder | Limited | AD |
Mondo (2): hypoplastic left heart syndrome (MONDO:0004933), neurodevelopmental disorder (MONDO:0700092)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005362_6 | Attention deficit hyperactivity disorder | 5.000000e-07 |
| GCST007552_38 | Colorectal cancer | 5.000000e-08 |
| GCST008595_115 | Cognitive ability, years of educational attainment or schizophrenia (pleiotropy) | 8.000000e-09 |
| GCST010002_214 | Refractive error | 8.000000e-10 |
| GCST010118_129 | Type 2 diabetes | 4.000000e-32 |
| GCST010796_5313 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_5314 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_5315 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-08 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004337 | intelligence |
| EFO:0004784 | self reported educational attainment |
| EFO:0004327 | electrocardiography |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018636 | Hypoplastic Left Heart Syndrome | C14.240.400.625; C14.280.400.625; C16.131.240.400.625 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
35 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | decreases expression, increases methylation, increases mutagenesis | 3 |
| Valproic Acid | decreases expression, increases expression | 3 |
| sodium arsenite | increases expression, affects cotreatment, decreases expression, increases abundance | 2 |
| Tretinoin | decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | increases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, increases methylation, decreases methylation | 1 |
| trichostatin A | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| avobenzone | increases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| pentabromodiphenyl ether | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, decreases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Acetaminophen | decreases expression | 1 |
| Arsenic | increases abundance, affects cotreatment, decreases expression | 1 |
| Atrazine | decreases expression | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Catechin | decreases expression, affects cotreatment | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Manganese | increases abundance, affects cotreatment, decreases expression | 1 |
| Potassium Dichromate | decreases expression | 1 |
| Rotenone | decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A8MP | MRIi018-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
255 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02781922 | PHASE3 | RECRUITING | Cardiac Stem/Progenitor Cell Infusion in Univentricular Physiology (APOLLON Trial) |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT00507819 | PHASE2 | COMPLETED | Sildenafil After the Fontan Operation |
| NCT01292551 | PHASE2 | COMPLETED | Study of Placebo or Bosentan to Treat Patients With Single Ventricle Physiology. |
| NCT01829750 | PHASE2 | COMPLETED | Cardiac Progenitor Cell Infusion to Treat Univentricular Heart Disease (PERSEUS) |
| NCT02080637 | PHASE2 | COMPLETED | Ambrisentan in Single Ventricle |
| NCT03779711 | PHASE2 | ACTIVE_NOT_RECRUITING | Intramyocardial Injection of Autologous Umbilical Cord Blood Derived Mononuclear Cells During Surgical Repair of Hypoplastic Left Heart Syndrome |
| NCT04925024 | PHASE2 | ACTIVE_NOT_RECRUITING | Evaluation of Lomecel-B™ Injection in Patients With Hypoplastic Left Heart Syndrome (HLHS): A Phase IIb Clinical Trial. |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT01273857 | PHASE1 | COMPLETED | Transcoronary Infusion of Cardiac Progenitor Cells in Patients With Single Ventricle Physiology |
| NCT01445041 | PHASE1 | TERMINATED | Safety and Feasibility Study of Umbilical Cord Blood Cells for Infants With Hypoplastic Left Heart Syndrome |
| NCT01883076 | PHASE1 | COMPLETED | Safety Study of Autologous Umbilical Cord Blood Cells for Treatment of Hypoplastic Left Heart Syndrome |
| NCT02398604 | PHASE1 | TERMINATED | Allogeneic hMSC Injection in Patients With Hypoplastic Left Heart Syndrome |
| NCT03406884 | PHASE1 | COMPLETED | The CHILD Trial: Hypoplastic Left Heart Syndrome Study. |
| NCT03431480 | PHASE1 | COMPLETED | Safety of Autologous Cord Blood Cells in HLHS Patients During Norwood Heart Surgery |
| NCT04181255 | PHASE1 | TERMINATED | Cold Heart Study: A Randomized Pilot Trial of Surfactant Therapy |
| NCT06461676 | PHASE1 | NOT_YET_RECRUITING | Study of Intramyocardial Injection of Ventrix Bio Extracellular Matrix (VentriGel) to Assess the Safety and Feasibility in Pediatric Patients with Hypoplastic Left Heart Syndrome (HLHS) |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT00513240 | PHASE1/PHASE2 | COMPLETED | Erythropoetin Neuroprotection for Neonatal Cardiac Surgery |
| NCT03079401 | PHASE1/PHASE2 | UNKNOWN | Mesoblast Stem Cell Therapy for Patients With Single Ventricle and Borderline Left Ventricle |
| NCT03136835 | PHASE1/PHASE2 | COMPLETED | Maternal Hyperoxygenation in Congenital Heart Disease |
| NCT03525418 | PHASE1/PHASE2 | UNKNOWN | Lomecel-B Delivered During Stage II Surgery for Hypoplastic Left Heart Syndrome (ELPIS) |
| NCT00156455 | Not specified | WITHDRAWN | Sleep Disordered Breathing in Children With Single Ventricle Physiology |
| NCT00308217 | Not specified | COMPLETED | Single Ventricle Outcome |
| NCT00464100 | Not specified | COMPLETED | Near-infrared Spectroscopy (NIRS) Neurodevelopmental Outcomes |
| NCT00571233 | Not specified | COMPLETED | Biomarker Study for Heart Failure in Children With Single Ventricle Physiology |
| NCT00734643 | Not specified | COMPLETED | Family Adaptation Study Following the Diagnosis of Hypoplastic Left Heart Syndrome in a Newborn |
| NCT00860327 | Not specified | TERMINATED | Examining Developmental Changes in Heart Contractions of Children With Congenital Heart Defects |
| NCT00974025 | Not specified | COMPLETED | Impact of Vitamin C on Endothelial Function and Exercise Capacity in Fontan-Palliated Patients |
| NCT01032876 | Not specified | COMPLETED | Cerebral Perfusion During Neonatal Cardiac Surgery |
| NCT01107990 | Not specified | TERMINATED | Global and Regional Myocardial Strain and Power Output In Patients With Single Ventricles Using Novel MRI Techniques |
Related Atlas pages
- Associated diseases: hypoplastic left heart syndrome, neurodevelopmental disorder, complex neurodevelopmental disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hypoplastic left heart syndrome